Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009226.1 Hibiscus syriacus cultivar Beakdansim tig00112828_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  168013

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2634--2688
26
2.1
26
93
6
94
45
7
14
32
1.72
3908--3960
18
2.8
20
74
8
56
39
5
3
50
1.44
3912--4000
32
2.8
32
78
0
88
38
6
2
52
1.40
3943--4003
6
9.5
6
76
13
50
37
6
0
55
1.26
3977--4004
14
2.0
14
100
0
56
35
7
0
57
1.26
7918--7961
18
2.4
18
88
0
70
52
18
13
15
1.75
15602--15652
23
2.1
26
85
10
72
50
1
3
43
1.31
16484--16528
21
2.1
21
95
0
81
28
15
26
28
1.96
20722--20801
29
2.7
29
92
3
124
37
6
13
42
1.70
20894--20991
29
3.3
29
81
4
108
39
9
11
39
1.73
26646--26742
44
2.2
44
86
0
131
31
21
16
29
1.95
32472--32563
21
4.4
20
69
11
60
32
18
15
33
1.92
34521--34555
16
2.2
16
89
0
52
20
0
22
57
1.41
34672--34696
13
1.9
13
100
0
50
36
0
16
48
1.46
35348--35448
44
2.3
44
87
3
141
28
22
17
30
1.97
36721--36756
19
1.9
19
88
5
56
58
0
2
38
1.13
39420--39778
131
2.7
131
82
2
405
25
16
30
27
1.97
39777--39992
65
3.3
65
84
2
261
42
12
19
25
1.86
39877--40029
36
4.4
36
75
16
153
39
15
20
24
1.91
39954--40014
20
3.2
20
65
25
51
44
18
16
21
1.87
40132--40242
36
3.1
35
77
3
123
36
11
17
34
1.86
46721--46801
3
26.7
3
92
2
135
64
0
2
33
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49449--49473
12
2.1
12
100
0
50
60
0
0
40
0.97
63335--63380
6
7.5
6
77
22
51
80
0
17
2
0.81
63336--63377
13
3.3
12
83
9
57
83
0
14
2
0.75
65480--65510
16
1.9
16
93
0
53
35
19
9
35
1.85
73659--73728
24
2.9
24
100
0
140
41
15
12
30
1.85
77018--77383
44
8.4
44
77
6
210
28
22
16
32
1.96
79022--79060
15
2.6
15
87
0
60
66
0
7
25
1.18
79170--79214
19
2.3
20
80
7
56
66
2
13
17
1.34
79976--80003
14
2.0
14
100
0
56
7
28
28
35
1.84
80208--80374
72
2.3
71
83
9
203
43
10
2
43
1.51
80218--80331
37
3.1
36
69
13
92
44
8
2
43
1.49
80300--80366
35
1.9
35
87
0
98
52
5
0
41
1.26
80373--80417
18
2.5
18
77
0
54
44
8
2
44
1.47
80391--80519
36
3.7
36
82
12
139
40
9
5
44
1.59
80972--81334
201
1.8
202
83
3
489
27
20
19
33
1.96
88057--88092
15
2.4
15
85
0
54
66
0
8
25
1.19
89768--89977
107
2.0
107
97
0
393
35
13
10
40
1.80
89932--90191
141
1.8
141
86
0
376
33
13
12
39
1.83
97704--97757
20
2.7
20
91
5
83
33
14
22
29
1.94
98301--98337
18
2.1
18
85
14
51
51
5
10
32
1.60
98716--98752
18
2.1
18
85
14
51
51
5
10
32
1.60
98067--99732
415
4.0
415
95
1
3038
45
14
12
28
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
101050--101083
13
2.6
13
90
0
50
44
5
11
38
1.65
101543--101619
23
3.6
21
80
14
86
31
16
19
32
1.94
117274--117346
32
2.3
32
97
0
137
42
26
13
17
1.87
122164--122201
2
19.0
2
100
0
76
50
0
0
50
1.00
123598--123998
102
3.9
99
73
9
277
33
15
11
38
1.84
123898--124168
67
4.1
66
86
2
384
31
15
12
40
1.85
124168--124579
137
3.0
137
86
0
574
26
28
17
27
1.98
124765--124808
3
14.7
3
95
0
79
34
2
0
63
1.07
125480--125530
25
2.0
26
85
11
70
64
5
23
5
1.38
126429--126458
16
1.9
16
93
6
53
13
23
10
53
1.69
131256--131319
28
2.3
27
83
2
74
35
7
9
46
1.65
131922--132180
124
2.1
121
80
6
302
30
18
19
31
1.96
132158--132248
42
2.1
42
84
6
112
30
13
17
38
1.88
137610--137667
22
2.6
22
74
15
57
58
1
10
29
1.41
139233--139756
105
5.0
104
80
8
509
20
20
25
33
1.97
139281--139647
203
1.8
203
96
0
680
19
21
25
33
1.97
139387--139647
98
2.6
97
83
6
297
19
20
25
34
1.96
140487--140525
11
3.4
11
83
13
51
0
10
5
84
0.76
140521--140618
49
1.9
51
85
6
137
15
23
15
45
1.84
151258--151350
24
3.9
22
70
23
64
56
2
8
32
1.41
167384--167450
21
3.0
22
71
16
66
32
28
16
22
1.95

Tables:   1

The End!