Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009227.1 Hibiscus syriacus cultivar Beakdansim tig00112831_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79972

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10879--10903
2
12.5
2
100
0
50
52
0
0
48
1.00
21014--21115
21
4.8
20
73
11
62
33
27
17
21
1.96
21007--21093
44
2.0
44
88
0
129
32
26
18
22
1.97
27283--27324
21
2.0
21
81
9
50
33
19
19
28
1.96
27344--27388
21
2.1
21
87
0
63
31
24
17
26
1.97
28959--28998
20
2.0
21
95
5
73
32
22
20
25
1.98
33369--33436
22
3.2
22
65
23
63
36
5
5
51
1.50
33374--33439
20
3.2
20
65
23
55
37
6
4
51
1.47
33366--33454
42
2.1
42
100
0
178
38
6
4
50
1.49
33376--33444
22
3.2
22
66
22
65
37
5
4
52
1.46
35444--35501
3
20.0
3
78
7
66
37
3
0
58
1.15
35444--35500
17
3.3
17
80
11
62
38
3
0
57
1.16
35444--35501
20
2.9
20
86
0
80
37
3
0
58
1.15
35546--35590
20
2.2
20
100
0
90
26
28
22
22
1.99
35623--35654
16
2.0
16
93
0
55
25
43
15
15
1.86
36289--36335
20
2.3
20
85
0
67
25
12
38
23
1.90
36289--36344
20
2.8
19
74
15
51
25
10
42
21
1.85
36990--37032
18
2.4
18
100
0
86
34
11
16
37
1.85
39874--39956
42
2.0
42
95
0
148
49
13
18
19
1.79
42905--42992
17
5.4
17
80
9
94
82
0
17
0
0.66
42908--43056
14
10.4
14
85
9
142
78
0
21
0
0.75
42932--42978
1
47.0
1
82
0
58
91
0
8
0
0.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42908--43056
7
21.9
7
85
10
114
78
0
21
0
0.75
44285--44466
51
3.6
51
90
1
267
33
16
25
24
1.96
46059--47123
177
6.0
177
89
1
1652
32
17
20
29
1.95
46063--47121
530
2.0
530
90
1
1685
32
17
20
29
1.95
47124--47885
120
6.2
122
85
4
882
38
15
19
26
1.91
48002--48069
3
23.0
3
81
3
84
35
4
1
58
1.27
48875--48914
20
2.0
20
90
0
62
25
12
40
22
1.89
51050--51141
29
3.1
29
79
1
94
59
7
10
21
1.55
51629--51677
22
2.2
23
82
10
57
0
10
12
77
0.99
51628--51678
17
3.0
16
76
21
50
0
9
13
76
1.02
52690--52772
29
2.9
29
90
0
130
49
14
18
18
1.80
52818--52895
30
2.5
31
85
6
97
44
14
15
25
1.84
61135--61159
6
4.2
6
100
0
50
52
0
0
48
1.00

Tables:   1

The End!