genome.fa.s9228.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009228.1 Hibiscus syriacus cultivar Beakdansim tig00112832_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64645

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1448--1485	20	1.9	20	100	0	76	28	31	21	18	1.97
9559--9677	54	2.2	54	83	5	143	30	27	18	23	1.98
11391--11494	48	2.2	48	82	0	118	18	14	16	50	1.77
11421--11494	24	3.1	24	84	0	94	16	16	16	51	1.77
15559--15626	24	2.9	23	77	14	75	17	11	17	52	1.73
18887--18954	31	2.2	31	91	0	109	27	7	11	52	1.64
21100--21193	42	2.2	42	96	0	170	20	29	25	24	1.99
23549--23605	25	2.3	24	80	14	62	38	5	17	38	1.72
27728--27778	20	2.6	19	78	3	57	45	0	0	54	0.99
29519--29588	3	24.0	3	75	16	67	62	1	1	34	1.13
29518--29585	23	3.0	23	82	8	77	61	1	2	33	1.20
29990--30045	25	2.2	25	100	0	112	14	19	10	55	1.68
32435--32471	19	1.9	19	100	0	74	37	5	18	37	1.74
37392--37438	13	3.8	13	81	16	64	14	19	48	17	1.81
37451--37494	10	4.6	10	86	8	65	34	29	22	13	1.93
37451--37495	19	2.4	19	96	0	81	33	28	22	15	1.95
44638--44684	13	3.8	13	81	16	64	14	19	48	17	1.81
44697--44751	10	5.6	10	85	10	78	34	29	21	14	1.93
44697--44752	19	2.9	19	87	10	78	33	28	21	16	1.95
46011--46065	25	2.2	25	93	0	92	30	18	23	27	1.97
46858--46925	24	2.9	23	77	14	75	17	11	17	52	1.73
50775--50830	23	2.4	23	90	0	94	19	50	21	8	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50784--50836	13	4.3	13	76	13	67	18	45	22	13	1.84
53111--53225	24	4.8	24	88	4	160	25	14	20	40	1.90
53114--53242	24	5.4	24	85	3	152	26	12	20	40	1.88
53441--53483	2	21.5	2	100	0	86	48	0	0	51	1.00
61418--61473	20	3.0	19	80	10	62	46	0	0	53	1.00
61531--61578	19	2.5	20	76	13	55	50	2	0	47	1.12
61530--61614	27	3.5	25	74	18	65	45	3	1	49	1.26
62463--62654	70	2.9	64	80	17	209	28	1	12	57	1.45
62558--62620	19	3.2	19	75	4	54	31	0	12	55	1.37
63235--63273	20	1.9	21	84	5	53	20	5	0	74	1.01
63313--63351	16	2.4	17	82	4	53	33	2	0	64	1.08

Tables:   1

The End!