genome.fa.s9229.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009229.1 Hibiscus syriacus cultivar Beakdansim tig00112835_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  219427

Tables:   1   

This is table  1  of  1  ( 77 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1030--1080	23	2.2	23	85	0	66	47	1	0	50	1.12
2011--2066	23	2.4	23	90	0	94	19	50	21	8	1.75
2020--2072	13	4.3	13	76	13	67	18	45	22	13	1.84
4346--4462	47	2.4	48	87	7	175	24	14	20	40	1.90
4349--4462	24	4.8	24	88	6	160	24	14	20	40	1.90
4548--4614	34	2.1	32	83	8	82	8	26	29	34	1.87
4674--4716	2	21.5	2	100	0	86	48	0	0	51	1.00
12682--12729	22	2.3	21	79	10	53	43	0	0	56	0.99
12800--12847	19	2.5	20	76	13	55	50	2	0	47	1.12
12799--12883	27	3.5	25	74	18	65	45	3	1	49	1.26
13729--13892	75	2.2	75	87	4	233	29	2	10	57	1.46
13850--13912	19	3.2	19	75	4	54	31	0	12	55	1.37
14541--14581	21	1.9	22	90	5	66	19	4	0	75	0.98
14621--14661	17	2.3	19	87	8	59	31	2	0	65	1.05
20257--20296	9	4.3	9	87	6	62	10	2	2	85	0.80
22136--22300	76	2.2	76	89	3	253	30	3	10	55	1.49
24445--24476	12	2.6	13	85	14	50	0	40	28	31	1.57
25690--25739	25	2.0	25	88	11	77	36	4	4	56	1.37
26134--26182	23	2.2	23	89	10	75	20	22	38	18	1.93
26134--26194	20	2.9	21	85	11	72	19	26	32	21	1.97
32536--32576	21	1.9	22	90	5	66	19	4	0	75	0.98
33090--33157	31	2.2	31	89	0	100	33	5	8	51	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38097--38167	20	3.5	20	94	0	124	12	11	40	35	1.79
41709--41809	27	3.9	27	85	6	145	54	0	18	26	1.44
41710--41809	52	1.9	51	93	2	173	54	0	19	27	1.45
46292--46331	21	1.9	21	100	0	80	45	7	25	22	1.78
46310--46355	15	3.1	15	75	6	58	45	6	17	30	1.73
46510--46594	22	3.9	23	71	11	63	45	2	0	51	1.13
46738--46815	25	3.0	24	74	25	70	51	1	1	46	1.17
46797--46885	25	3.7	24	71	15	60	49	1	1	48	1.16
48098--48440	180	1.9	181	91	0	562	39	4	10	45	1.59
50989--51331	183	1.9	181	83	6	442	37	9	9	42	1.71
53861--53916	27	2.0	27	80	16	62	51	7	1	39	1.40
55919--55974	28	2.0	29	83	10	73	51	7	0	41	1.29
56007--56037	14	2.1	15	94	5	55	70	16	0	12	1.16
62696--62778	24	3.4	23	73	12	69	40	15	20	22	1.90
70276--70321	20	2.3	19	85	14	58	26	15	8	50	1.73
71861--71904	21	2.1	21	86	0	61	38	20	18	22	1.93
78304--78349	20	2.3	19	85	14	58	26	15	8	50	1.73
85774--85818	22	2.0	22	95	0	81	62	13	11	13	1.55
88290--88332	22	2.0	22	86	9	61	67	2	0	30	1.03
91502--91555	26	2.1	26	86	6	74	50	14	3	31	1.61
93221--93269	20	2.3	22	80	13	59	46	28	0	24	1.53
97522--97562	21	1.9	22	90	5	66	34	7	14	43	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100544--100607	35	1.9	34	84	9	87	45	7	17	29	1.76
104555--104594	21	1.9	21	89	0	62	25	40	25	10	1.86
119483--119530	17	2.6	19	87	9	64	2	33	0	64	1.05
127379--127472	35	2.8	33	82	7	100	39	9	18	32	1.83
127379--127518	39	3.9	36	81	8	126	37	8	19	34	1.82
136274--136343	21	3.2	21	71	15	61	32	21	18	27	1.97
136274--136371	45	2.2	44	85	12	130	29	22	19	28	1.98
140091--140201	39	2.9	39	87	1	143	51	10	18	19	1.75
148358--148459	45	2.2	45	93	5	170	42	11	23	22	1.86
148358--148425	24	3.0	24	69	18	72	41	13	23	22	1.89
155041--155323	45	6.3	45	91	1	424	45	11	19	23	1.83
156502--156568	24	2.8	24	84	4	73	11	17	23	46	1.82
157020--157083	32	2.0	32	93	3	112	51	14	7	26	1.69
157777--157809	16	2.1	16	94	0	57	9	12	21	57	1.62
159642--159704	11	5.9	11	73	14	60	57	1	1	39	1.18
159813--159912	7	14.3	7	69	12	62	45	26	1	28	1.60
159813--159914	28	3.6	28	75	5	80	44	25	0	29	1.61
159811--159913	21	4.9	20	72	11	82	43	25	0	30	1.61
162472--162526	17	3.2	17	84	5	74	12	20	47	20	1.82
162473--162529	18	3.2	18	85	2	80	12	19	47	21	1.81
169707--169760	17	3.1	17	81	5	63	16	20	42	20	1.89
171781--171831	20	2.6	21	81	12	63	50	11	0	37	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
175726--175761	14	2.6	14	95	0	63	36	0	0	63	0.94
177689--177732	20	2.1	21	84	12	56	36	0	31	31	1.58
182623--183357	260	2.8	260	83	4	907	34	17	16	31	1.93
183161--183260	42	2.4	42	84	1	128	30	19	21	30	1.97
184698--184744	18	2.7	18	86	3	69	14	6	0	78	0.93
184698--184747	24	2.1	24	85	3	66	14	6	0	80	0.90
188261--188304	23	2.0	23	86	4	63	59	0	18	22	1.38
206292--206342	20	2.5	21	77	22	56	41	0	3	54	1.19
207737--207770	2	16.5	2	87	6	50	44	2	2	50	1.32
207620--208024	194	2.0	203	85	10	562	30	8	5	55	1.52
207998--208055	17	3.2	19	77	22	70	24	6	0	68	1.13

Tables:   1

The End!