Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000923.1 Hibiscus syriacus cultivar Beakdansim tig00001841_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75927

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
199--245
19
2.6
18
81
15
53
59
6
4
29
1.41
1410--1453
14
3.3
14
84
6
56
59
0
0
40
0.98
1402--1452
11
4.5
11
82
7
66
56
0
0
43
0.99
5219--5333
41
2.8
41
77
11
117
29
19
20
31
1.97
5648--5717
21
3.3
21
78
7
79
7
34
17
41
1.76
5648--5740
42
2.2
42
84
0
114
5
34
17
43
1.72
5648--5768
21
5.8
21
77
0
71
4
34
18
42
1.72
7250--7298
17
2.9
17
96
3
91
67
4
10
18
1.36
9383--9417
18
1.9
18
94
0
61
42
11
2
42
1.55
9566--9640
24
3.0
24
81
12
87
36
21
5
37
1.76
13553--13601
22
2.2
22
85
0
62
34
10
12
42
1.76
14062--14242
82
2.2
82
83
3
213
30
22
15
30
1.95
16918--16963
23
2.0
23
100
0
92
43
4
13
39
1.63
20067--20199
2
66.5
2
93
0
230
48
1
1
48
1.19
20312--20363
19
2.7
19
82
5
61
48
0
25
26
1.52
20273--20362
46
2.0
46
82
4
110
47
2
24
25
1.63
20826--20872
14
3.7
14
71
26
50
51
4
0
44
1.21
20824--20873
23
2.1
24
96
3
93
48
4
0
48
1.20
21129--21180
16
3.2
16
97
0
95
40
13
28
17
1.87
21905--22011
53
2.0
53
89
3
162
28
18
16
36
1.93
28938--28990
26
2.0
26
100
0
106
50
11
0
37
1.38
32502--32540
15
2.7
14
82
17
53
28
10
23
38
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32919--32954
2
18.5
2
94
5
65
52
0
0
47
1.00
36519--36944
37
11.4
36
78
11
342
45
3
7
43
1.50
36524--37012
114
4.4
113
81
9
488
45
4
8
42
1.53
36813--36969
38
4.2
38
69
10
124
47
1
8
41
1.46
37039--37072
16
2.2
15
89
5
50
23
2
0
73
0.97
47291--47752
38
12.4
38
83
8
476
42
4
8
45
1.53
47281--47812
37
14.4
37
81
10
526
43
4
8
43
1.54
47281--47812
75
7.2
75
81
10
532
43
4
8
43
1.54
47372--47396
13
1.9
13
100
0
50
40
8
8
44
1.63
47550--47817
107
2.5
106
79
10
269
46
4
7
41
1.51
47808--47859
21
2.5
21
78
9
54
28
1
3
65
1.21
47820--47859
20
2.0
20
85
9
55
30
0
2
67
1.04
52282--52454
90
1.9
89
90
3
276
38
9
7
44
1.66
59063--59235
90
1.9
89
91
3
285
38
10
7
43
1.68
60215--60442
12
19.0
12
91
0
348
49
4
0
45
1.28
60215--60442
14
16.0
14
87
6
298
49
4
0
45
1.28
60215--60442
26
8.8
26
91
0
348
49
4
0
45
1.28
60215--60442
30
7.7
30
91
2
352
49
4
0
45
1.28
64956--65012
3
18.3
3
86
13
80
64
0
0
35
0.93
65363--65682
44
7.6
44
68
17
178
29
20
22
28
1.98
65188--65772
125
4.7
124
83
4
717
28
19
24
27
1.99
65189--65772
249
2.3
249
85
3
789
28
19
24
27
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
71637--72212
293
2.0
284
88
5
843
22
14
31
31
1.94
72456--72480
7
3.6
7
100
0
50
12
0
28
60
1.32
73009--73065
25
2.3
25
84
0
69
31
31
1
35
1.68
73039--73163
32
3.9
32
96
0
214
30
32
0
36
1.58

Tables:   1

The End!