genome.fa.s9232.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009232.1 Hibiscus syriacus cultivar Beakdansim tig00112840_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  107547

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13094--13130	14	2.6	14	100	0	74	10	43	0	45	1.39
13088--13131	14	2.9	16	83	13	65	13	43	0	43	1.44
18423--18504	30	2.7	30	88	0	110	21	26	18	32	1.97
19898--20044	21	7.0	21	70	14	106	37	22	20	19	1.94
19901--20038	43	3.3	43	87	7	210	38	23	19	18	1.93
22361--22747	195	2.0	192	96	3	715	34	18	9	36	1.84
24499--24592	20	4.7	20	80	7	91	34	25	15	24	1.95
24496--24573	41	1.9	41	89	0	120	38	23	15	23	1.92
24780--24823	22	2.0	22	95	0	79	20	45	15	18	1.85
26353--26396	17	2.5	18	85	3	63	27	45	15	11	1.81
26869--26970	19	5.6	19	76	13	79	41	23	21	13	1.89
26996--27038	18	2.4	18	100	0	86	4	27	25	41	1.75
27058--27112	20	2.8	19	78	5	65	18	21	21	38	1.94
29084--29234	37	4.3	37	82	13	171	45	17	21	14	1.84
29136--29234	14	5.9	16	80	18	89	47	17	22	13	1.81
29119--29234	51	2.3	51	95	0	205	47	17	20	14	1.82
29253--29310	20	2.9	20	94	0	98	17	22	22	37	1.93
30335--30388	24	2.2	24	90	0	81	24	16	20	38	1.92
30563--30587	12	2.1	12	100	0	50	72	0	28	0	0.86
32852--32981	19	7.7	19	62	25	76	42	19	23	15	1.89
32853--32984	33	4.0	33	83	10	173	40	18	22	17	1.91
32853--32984	66	2.0	65	94	1	228	40	18	22	17	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33143--33176	14	2.4	14	90	0	59	44	23	0	32	1.54
34569--34652	42	2.0	42	83	4	107	25	16	36	21	1.94
36650--36687	20	1.9	20	88	0	58	42	21	23	13	1.88
36650--36814	19	9.1	19	78	14	170	43	23	22	11	1.85
36650--36814	33	4.6	38	84	9	170	43	23	22	11	1.85
36810--36876	19	3.5	19	85	2	89	10	16	25	47	1.78
37393--37444	20	2.6	20	93	0	86	25	19	28	26	1.98
37450--37483	16	2.1	16	94	0	59	29	17	17	35	1.93
37393--37502	20	5.7	19	77	12	73	25	17	24	32	1.96
37491--37583	20	4.5	21	78	4	100	17	24	18	39	1.91
37412--37543	57	2.2	59	80	7	135	22	18	21	37	1.95
37491--37583	41	2.3	41	100	0	186	17	24	18	39	1.91
47209--47290	27	3.2	26	77	19	82	51	2	1	45	1.22
46934--47831	449	2.0	451	98	0	1730	45	3	5	45	1.43
62421--62471	25	2.0	25	100	0	102	37	23	15	23	1.93
63679--63712	18	1.9	18	94	5	61	70	5	5	17	1.28
64965--65007	22	2.0	22	90	0	68	32	18	37	11	1.87
65587--65803	43	4.8	44	70	11	134	23	17	30	27	1.97
65637--65830	47	4.1	46	68	16	137	24	15	31	27	1.95
65554--65936	141	2.7	141	93	1	635	24	18	29	28	1.98
77634--77660	14	1.9	14	100	0	54	29	14	0	55	1.40
78622--78651	2	15.0	2	92	0	51	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78697--78730	18	1.9	18	94	5	61	70	5	5	17	1.28
79923--79972	22	2.3	22	92	0	82	28	24	38	10	1.87
87509--87732	41	5.5	40	72	8	157	29	20	17	33	1.95
87463--87700	41	5.8	41	72	4	151	29	21	17	31	1.96
87466--87732	122	2.2	122	81	4	315	29	20	17	31	1.96
90594--90652	21	2.8	21	86	0	82	20	5	20	54	1.63
90764--90860	43	2.3	43	83	7	117	22	21	21	34	1.97
90800--91073	43	6.4	43	88	0	334	27	23	20	28	1.99
92435--92563	60	2.2	60	81	5	154	41	4	21	32	1.74
92451--92582	60	2.2	60	81	8	144	43	6	17	33	1.74
94999--95119	43	2.8	43	78	8	131	29	20	20	28	1.98
97659--98051	146	2.7	146	88	1	572	31	20	27	20	1.98
100366--100482	47	2.5	47	91	1	182	31	15	22	30	1.95
101231--101273	6	7.2	6	89	10	70	16	16	18	48	1.81
101231--101273	19	2.4	18	92	7	70	16	16	18	48	1.81
103945--104453	125	4.1	125	90	1	765	33	15	27	23	1.95
105624--105700	36	2.1	36	82	0	100	40	22	15	22	1.91
106115--107067	54	17.9	54	86	5	1221	32	19	26	21	1.97
107022--107412	52	7.4	53	86	9	486	29	13	26	30	1.94
107022--107412	103	3.7	102	84	9	454	29	13	26	30	1.94
107022--107430	155	2.6	159	84	9	527	30	13	26	29	1.94
107391--107521	52	2.5	55	80	7	155	31	22	22	23	1.99

Tables:   1

The End!