genome.fa.s9237.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009237.1 Hibiscus syriacus cultivar Beakdansim tig00112863_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  138245

Tables:   1   

This is table  1  of  1  ( 95 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2099--2140	20	2.0	20	95	4	75	64	9	4	21	1.42
3698--3764	23	2.9	23	88	0	98	26	25	25	22	2.00
3780--3997	103	2.1	103	94	1	384	37	23	13	25	1.91
5205--5268	32	2.1	30	91	5	101	35	0	35	28	1.58
5233--5280	25	1.9	25	91	0	78	33	0	35	31	1.58
7384--7413	6	4.8	6	95	4	51	66	3	0	30	1.07
7760--7793	2	18.0	2	88	11	54	47	0	0	52	1.00
8563--8608	2	23.0	2	100	0	92	50	0	0	50	1.00
8608--8651	2	22.0	2	100	0	88	50	0	50	0	1.00
8708--8733	2	13.0	2	100	0	52	50	0	0	50	1.00
11450--11547	31	3.4	27	73	15	79	34	18	5	41	1.72
11420--11595	60	2.9	59	78	10	162	33	20	6	39	1.78
11952--12027	38	2.1	35	82	7	89	31	3	1	63	1.21
12863--12928	24	2.5	26	83	14	91	43	3	0	53	1.16
13260--13310	23	2.2	23	86	6	68	52	3	0	43	1.19
13619--13669	21	2.5	19	81	9	57	52	0	0	47	1.00
13709--13800	24	3.8	25	71	17	61	52	0	2	45	1.13
13692--13754	27	2.4	27	80	12	69	55	1	1	41	1.19
13893--13921	14	2.1	14	100	0	58	41	6	6	44	1.58
18521--18568	12	3.9	12	78	21	55	56	4	0	39	1.19
24293--24622	166	2.0	164	97	2	617	30	31	19	18	1.96
26777--26819	22	2.0	22	95	0	77	25	23	25	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26837--27054	103	2.1	103	96	0	400	38	22	13	26	1.91
28648--28785	64	2.2	63	83	7	163	29	16	23	29	1.96
28809--28847	12	3.6	12	74	25	50	25	17	25	30	1.97
28801--28856	20	2.8	20	97	0	103	23	19	28	28	1.98
35222--35593	55	6.8	54	88	6	520	28	27	14	28	1.95
35222--35594	165	2.3	163	89	4	590	28	27	14	28	1.95
35199--36323	51	21.1	54	81	9	569	24	25	17	32	1.97
35565--36323	51	14.5	51	84	7	893	23	24	18	33	1.97
35565--36323	104	7.2	102	82	9	893	23	24	18	33	1.97
35565--36323	155	4.8	155	84	9	907	23	24	18	33	1.97
36693--36958	36	7.4	36	86	2	338	19	20	23	36	1.95
37677--37987	127	2.4	127	87	4	421	21	26	16	36	1.94
39252--39281	16	1.9	15	93	6	51	13	20	0	66	1.24
45045--45169	62	2.0	65	87	12	188	24	28	13	33	1.93
51299--51421	64	1.9	65	84	1	167	27	17	25	29	1.98
51321--51458	64	2.2	63	81	7	154	28	15	24	31	1.96
52346--52496	76	2.0	76	97	0	284	43	13	23	19	1.87
52891--52925	15	2.3	15	90	0	52	31	8	25	34	1.86
56859--56902	23	1.9	23	85	0	61	45	9	6	38	1.63
60670--60789	60	2.0	60	80	6	136	41	3	22	32	1.70
68846--68875	3	10.0	3	100	0	60	66	0	33	0	0.92
72279--72311	2	17.0	2	93	6	59	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76469--76525	30	1.9	30	92	0	96	40	7	7	45	1.58
76539--76582	22	2.0	22	82	8	54	54	2	0	43	1.12
76549--76593	22	2.0	22	95	0	81	48	6	0	44	1.29
76539--77603	54	19.4	54	74	16	644	53	12	0	34	1.40
76547--76599	22	2.4	22	87	6	72	52	5	0	41	1.25
76571--77603	32	36.4	32	68	27	514	53	12	0	34	1.40
76553--77603	80	12.8	80	81	11	668	53	12	0	34	1.40
76634--76679	22	2.0	22	87	4	65	54	15	0	30	1.41
76685--76733	22	2.2	22	85	3	62	55	12	0	32	1.37
76769--76811	22	2.0	22	95	0	77	51	11	0	37	1.39
76771--76819	22	2.2	22	85	3	62	55	12	0	32	1.37
76540--77503	224	4.4	219	88	7	1416	53	12	0	34	1.39
77054--77397	26	12.5	26	66	20	114	54	14	0	31	1.41
77217--77259	22	2.0	22	95	0	77	51	11	0	37	1.39
77219--77267	22	2.2	22	85	3	62	55	12	0	32	1.37
77261--77388	40	3.2	40	69	16	129	55	11	0	32	1.36
77433--77480	22	2.2	22	85	7	62	56	10	0	33	1.34
77538--77630	22	4.1	22	70	8	87	50	10	0	38	1.37
77583--77730	15	9.5	15	82	10	163	49	2	0	47	1.17
78809--78957	60	2.5	59	81	7	158	41	6	19	32	1.77
83628--83693	12	5.6	12	83	3	80	12	15	46	25	1.80
83691--83780	2	48.0	2	71	12	57	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83698--83763	24	2.6	25	79	15	75	45	0	0	54	0.99
86589--86644	25	2.2	25	93	0	94	35	14	14	35	1.86
87623--87686	21	3.1	21	75	4	67	17	18	28	35	1.93
87818--87866	6	8.5	6	90	2	66	30	53	16	0	1.43
88514--88577	21	3.1	21	75	2	76	39	26	17	17	1.91
90636--90752	44	2.6	45	93	1	200	19	13	24	41	1.88
93737--93804	27	2.6	27	93	4	113	42	16	10	30	1.81
97505--97599	27	3.6	27	97	2	176	41	15	12	30	1.85
107137--107175	17	2.3	17	86	0	51	7	41	10	41	1.68
107739--107785	23	2.0	24	91	4	78	36	4	8	51	1.52
112893--112920	6	4.7	6	100	0	56	67	0	14	17	1.22
113602--113639	15	2.5	15	86	0	58	15	7	0	76	1.01
113711--113768	16	3.6	16	77	9	64	31	3	0	65	1.09
113711--113748	15	2.4	16	91	4	60	34	2	0	63	1.09
114417--114487	2	36.0	2	97	2	135	50	0	0	49	1.00
114854--114899	24	1.9	24	100	0	92	8	13	23	54	1.66
114862--114892	14	2.2	14	94	0	53	6	12	25	54	1.62
114857--114912	24	2.3	24	90	0	85	12	10	19	57	1.64
115942--116008	16	4.3	16	92	3	102	10	10	19	59	1.58
115935--116000	32	2.0	33	94	2	116	7	12	22	57	1.60
116070--116100	16	1.9	16	100	0	62	6	12	22	58	1.58
119237--119274	16	2.4	16	90	0	58	34	10	5	50	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126599--126645	4	11.8	4	78	17	53	25	21	2	51	1.59
126592--126640	16	3.1	16	94	5	82	24	22	2	51	1.59
128653--128763	39	2.8	39	81	5	125	35	18	0	45	1.55
128803--128860	18	3.2	17	79	16	55	27	0	3	68	1.05
128930--128969	17	2.4	17	87	4	55	62	0	0	37	0.95
130392--130448	29	2.0	29	89	0	87	8	35	36	19	1.83
133564--133711	60	2.5	61	81	7	160	40	4	22	32	1.75

Tables:   1

The End!