Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009239.1 Hibiscus syriacus cultivar Beakdansim tig00112866_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88483

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--68
12
6.0
11
75
17
52
14
2
2
79
0.97
84--145
25
2.5
25
84
5
72
25
4
0
69
1.08
110--157
14
3.2
15
73
8
53
29
4
0
66
1.10
7617--7652
15
2.4
15
90
0
54
22
27
11
38
1.88
10577--10631
24
2.3
24
100
0
110
10
10
23
54
1.67
12841--14156
211
6.3
211
78
3
1183
37
15
16
30
1.90
15701--16012
54
5.8
54
86
0
419
27
18
19
34
1.96
15701--16012
162
1.9
162
88
1
464
27
18
19
34
1.96
17646--17698
20
2.7
19
85
5
61
41
15
28
15
1.87
18776--18811
15
2.4
15
90
0
54
44
0
5
50
1.25
20413--20451
19
2.1
19
90
4
62
58
15
15
10
1.62
23040--23075
15
2.4
15
90
0
54
44
0
5
50
1.25
27718--27768
20
2.5
20
84
6
59
35
15
29
19
1.93
28200--28682
56
8.7
56
91
0
754
35
10
19
33
1.87
29661--29781
61
2.0
61
88
3
181
27
18
26
28
1.98
31750--33402
4
414.5
4
86
3
2035
44
24
5
25
1.74
36424--38840
211
11.5
211
80
3
2469
36
17
17
29
1.93
36424--38843
633
3.8
632
81
3
2750
36
17
17
29
1.93
39261--39336
36
2.1
36
97
0
143
43
14
10
31
1.79
42256--42665
211
1.9
211
84
1
536
33
16
20
29
1.94
45105--45189
7
12.1
7
97
0
161
44
41
0
14
1.45
45378--45549
44
4.0
42
79
7
166
25
17
5
51
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46352--46396
23
2.0
23
90
0
72
40
15
4
40
1.67
48949--49046
51
1.9
51
97
0
187
39
22
6
31
1.78
55664--55959
153
1.9
153
94
0
520
25
24
19
29
1.99
56294--56393
29
3.5
29
80
1
112
45
8
17
30
1.77
56288--56415
57
2.2
58
80
1
141
46
7
14
32
1.71
58680--59523
418
2.0
418
93
0
1436
23
14
24
37
1.92
59775--59842
29
2.4
28
76
16
68
45
2
2
48
1.32
63250--63296
7
6.7
7
100
0
94
74
0
12
12
1.07
63222--63317
7
13.3
7
77
16
54
77
1
14
7
1.04
63222--63315
14
6.7
15
76
19
64
76
1
14
7
1.05
64867--64992
65
1.9
65
90
3
200
29
16
12
41
1.85
65118--65263
75
1.9
75
82
8
181
30
19
11
38
1.87
65095--65270
75
2.3
74
76
12
178
29
19
11
39
1.87
65252--65342
46
2.0
46
93
4
157
20
27
14
37
1.92
66222--66947
138
5.2
138
90
0
1094
37
17
20
24
1.94
66222--66946
277
2.6
276
89
0
1101
37
17
20
24
1.94
66824--67044
98
2.3
99
87
4
322
36
16
19
26
1.93
67026--67061
17
2.1
17
100
0
72
50
5
22
22
1.70
68011--68043
16
2.2
15
89
10
50
12
18
0
69
1.18
71008--71336
153
2.2
153
92
0
532
24
23
21
30
1.99
71008--71374
153
2.4
153
87
1
468
25
22
22
29
1.99
72998--73041
16
2.8
16
89
0
61
22
29
25
22
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
73011--73043
16
2.1
16
100
0
66
24
30
18
27
1.98
81196--81267
17
4.2
17
76
5
65
37
13
8
40
1.75
81196--81267
34
2.1
35
84
7
94
37
13
8
40
1.75
82051--82148
48
2.0
49
98
2
189
42
10
16
30
1.81
83131--83258
66
1.9
67
87
4
188
53
5
3
37
1.43
83505--83567
14
4.9
14
74
14
55
61
0
1
36
1.05
85107--85136
3
10.0
3
100
0
60
0
33
0
66
0.92
86311--86344
2
17.0
2
100
0
68
50
0
0
50
1.00
87039--87611
152
3.8
153
88
4
855
27
21
19
31
1.98

Tables:   1

The End!