genome.fa.s924.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000924.1 Hibiscus syriacus cultivar Beakdansim tig00001842_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89883

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1510--1534	13	1.9	13	100	0	50	44	16	0	40	1.47
3621--3662	21	2.0	21	81	13	50	45	16	7	30	1.74
3945--3985	21	1.9	22	85	5	57	41	12	17	29	1.85
5080--5462	191	2.0	191	99	0	757	30	20	10	38	1.86
7667--7888	117	1.9	117	83	5	288	28	13	9	47	1.76
14029--14086	29	2.0	29	82	0	71	34	18	32	13	1.91
20299--20775	180	2.6	180	85	3	629	42	13	15	28	1.85
20692--20737	20	2.3	19	78	10	56	54	10	15	19	1.70
22835--22904	12	5.8	12	70	6	52	51	18	11	18	1.75
22840--22927	24	3.7	24	78	3	88	48	17	12	21	1.79
22833--22924	48	1.9	48	86	4	132	50	16	13	20	1.78
22833--22939	48	2.2	48	83	6	119	50	16	12	20	1.77
22833--22941	24	4.5	25	73	11	66	50	16	12	20	1.77
25904--25938	15	2.5	13	83	16	52	22	5	57	14	1.59
25907--25937	15	2.1	15	100	0	62	19	6	61	12	1.53
26020--26063	21	2.1	21	86	0	61	43	11	29	15	1.82
26097--26162	33	2.0	33	90	0	105	31	0	45	22	1.53
27950--27998	19	2.6	19	93	0	80	32	2	12	53	1.50
28240--28997	200	3.8	200	91	1	1234	37	14	15	32	1.89
31958--32067	51	2.1	53	81	9	138	39	18	19	23	1.92
31810--32262	252	1.8	251	88	1	694	37	15	16	31	1.90
32124--32479	177	2.0	177	92	1	597	37	14	17	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32300--32769	200	2.3	200	89	3	723	37	15	15	32	1.89
35144--35844	200	3.5	197	80	7	709	39	13	15	30	1.87
35952--35996	23	2.0	23	95	0	81	37	20	8	33	1.83
35868--36029	87	1.9	87	93	0	279	32	14	11	41	1.81
38280--38326	24	2.0	24	82	0	58	57	21	14	6	1.60
38502--38558	14	4.1	14	93	0	78	57	14	10	17	1.64
38497--38577	24	3.2	24	73	13	81	58	16	9	16	1.63
40310--40369	31	1.9	31	83	12	79	35	21	20	23	1.96
40346--40448	37	2.8	37	90	1	170	33	20	17	29	1.95
41266--41322	23	2.5	23	97	0	105	22	28	26	22	1.99
42116--42148	11	2.8	12	90	4	50	48	3	0	48	1.17
49030--49432	145	2.9	140	79	10	461	36	9	7	45	1.66
49944--49979	10	3.5	10	85	7	54	33	0	2	63	1.08
54099--54192	2	47.0	2	100	0	188	50	0	0	50	1.00
54486--54516	15	2.0	16	93	6	55	80	0	19	0	0.71
56784--57123	114	3.0	114	94	0	581	33	15	19	30	1.94
59188--59353	54	3.1	54	92	0	269	38	16	22	22	1.93
59711--59789	22	3.6	22	89	0	113	32	16	13	36	1.88
60197--60641	113	3.9	113	84	8	537	38	15	19	26	1.92
60197--60641	233	1.9	225	85	8	603	38	15	19	26	1.92
60436--60733	123	2.4	124	87	3	401	40	15	18	25	1.89
60621--60932	102	3.0	101	76	9	317	39	16	17	27	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62622--63013	143	2.9	137	79	10	439	36	9	8	45	1.66
62569--63014	143	3.2	143	76	15	435	37	8	7	46	1.63
73379--73429	16	3.2	16	88	0	75	21	19	13	45	1.85
73684--73730	14	3.7	14	71	26	50	44	0	4	51	1.21
73683--73732	23	2.1	24	96	3	93	48	0	4	48	1.20
75136--75179	22	2.1	20	84	16	54	40	13	6	38	1.71
75495--75560	20	3.2	20	66	16	53	39	9	7	43	1.65
75484--75583	42	2.4	42	89	0	155	41	12	7	40	1.69
76841--76880	18	2.4	17	87	8	55	10	2	7	80	1.00
82165--83409	84	15.3	80	79	7	1113	29	24	20	25	1.99
82174--83409	489	2.5	482	80	6	1357	29	24	20	25	1.99
82165--83409	164	7.6	163	77	7	1129	29	24	20	25	1.99
85869--85940	26	2.7	27	78	10	76	45	6	4	43	1.50
85914--86036	18	6.9	17	69	22	56	45	2	4	47	1.37
85859--86037	90	2.0	91	91	5	292	44	4	4	46	1.43
85987--86058	18	3.8	19	81	9	85	45	0	5	48	1.25
85907--86069	37	4.6	36	73	16	126	44	2	4	47	1.37
85859--86068	90	2.3	90	85	7	248	44	3	4	46	1.42
86360--86397	19	2.0	20	84	5	51	28	0	10	60	1.30
86909--86953	16	2.6	17	82	13	56	42	31	6	20	1.77
88984--89364	43	8.9	43	90	1	586	27	18	28	25	1.98
88984--89364	171	2.2	172	90	1	604	27	18	28	25	1.98

Tables:   1

The End!