genome.fa.s9244.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009244.1 Hibiscus syriacus cultivar Beakdansim tig00112879_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51011

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
965--1029	30	2.2	29	81	10	69	43	4	10	41	1.60
8288--8370	19	4.1	21	70	14	75	32	2	20	44	1.64
12833--12952	42	2.9	42	91	0	195	21	16	21	40	1.92
12836--12945	21	5.2	21	69	16	93	21	17	20	40	1.92
13827--14085	21	12.4	21	76	14	223	33	25	20	20	1.97
13802--14022	42	5.3	42	89	4	315	34	25	19	20	1.96
13798--14093	21	14.3	19	74	15	160	33	23	20	22	1.97
14097--14149	21	2.5	21	90	0	79	16	18	32	32	1.94
16382--16511	64	2.0	63	88	4	190	42	3	10	43	1.56
19759--19783	13	1.9	13	100	0	50	16	36	16	32	1.90
23195--23403	23	8.7	23	76	11	168	19	28	1	50	1.58
23195--23403	46	4.3	47	78	13	219	19	28	1	50	1.58
23242--23376	26	5.2	28	75	17	114	17	27	2	52	1.56
23196--23403	75	2.8	74	81	5	242	19	28	1	50	1.58
23177--23403	98	2.4	95	85	8	284	20	27	1	50	1.58
27306--27343	19	2.0	20	89	5	60	39	2	10	47	1.52
28920--28993	31	2.4	30	79	4	85	27	32	25	14	1.95
28872--28993	62	2.0	63	82	8	151	25	29	27	17	1.97
30482--30516	18	1.9	18	88	0	52	28	17	0	54	1.43
31796--31852	8	7.5	8	74	22	52	21	26	36	15	1.93
31796--31852	15	3.8	15	84	9	64	21	26	36	15	1.93
31813--31857	13	3.3	13	84	6	54	17	22	42	17	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31852--31900	13	3.8	13	80	0	62	18	16	44	20	1.86
33936--34009	31	2.4	30	79	4	85	27	32	25	14	1.95
33888--34009	62	2.0	63	82	8	151	25	29	27	17	1.97
35497--35531	18	1.9	18	88	0	52	28	17	0	54	1.43
36809--36865	8	7.5	8	74	22	52	21	26	36	15	1.93
36809--36865	15	3.8	15	84	9	64	21	26	36	15	1.93
36826--36870	13	3.3	13	84	6	54	17	22	42	17	1.89
40961--41007	23	2.0	24	91	4	78	31	14	23	29	1.95
43842--43885	13	3.1	14	82	17	56	34	22	22	20	1.97

Tables:   1

The End!