genome.fa.s9245.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009245.1 Hibiscus syriacus cultivar Beakdansim tig00112880_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  119421

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1453--1486	18	1.9	18	88	5	52	29	17	0	52	1.45
2748--2803	15	3.8	15	81	13	64	21	26	35	16	1.94
2803--2851	13	3.8	13	80	0	62	18	16	44	20	1.86
4866--4939	31	2.4	30	79	4	85	27	32	25	14	1.95
4818--4939	62	2.0	63	82	8	151	25	29	27	17	1.97
7721--7777	8	7.5	8	74	22	52	21	26	36	15	1.93
7721--7777	15	3.8	15	84	9	64	21	26	36	15	1.93
7738--7782	13	3.3	13	84	6	54	17	22	42	17	1.89
11862--11908	23	2.0	24	91	4	78	31	14	23	29	1.95
14748--14791	13	3.1	14	82	17	56	34	22	22	20	1.97
24663--24700	15	2.4	16	86	8	51	78	2	15	2	0.97
29296--29341	18	2.6	18	78	0	56	34	8	30	26	1.86
32334--32412	39	2.0	39	100	0	158	12	12	31	43	1.80
33338--33599	100	2.6	100	95	1	456	37	7	18	37	1.79
35186--35224	19	2.1	19	85	9	53	17	7	12	61	1.54
40392--40422	16	1.9	16	100	0	62	6	12	22	58	1.58
51809--51835	14	1.9	14	100	0	54	22	44	22	11	1.84
58860--58903	19	2.3	19	84	0	61	22	29	25	22	1.99
58895--58923	14	2.1	14	100	0	58	20	51	20	6	1.70
61232--61270	19	2.0	20	85	5	53	51	5	10	33	1.58
61446--61490	22	2.2	20	84	8	54	64	4	4	26	1.32
62087--62176	36	2.5	36	96	0	162	15	20	35	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74124--74158	2	17.5	2	100	0	70	48	0	0	51	1.00
77215--77687	181	2.6	182	92	1	763	42	13	16	26	1.86
79902--79966	21	3.1	21	88	0	94	41	10	29	18	1.84
80000--80063	33	1.9	33	90	0	101	31	0	45	23	1.53
81668--81716	19	2.6	19	93	0	80	34	2	8	55	1.41
81946--82305	200	1.8	200	98	0	693	36	15	18	29	1.91
85310--85382	23	3.2	23	92	0	119	35	6	20	36	1.80
86242--86404	87	1.9	87	94	0	290	33	14	10	41	1.79
86326--86370	23	2.0	23	86	0	63	37	15	8	37	1.79
86780--86839	30	1.9	32	90	6	97	48	0	0	51	1.00
86794--86898	26	4.2	26	73	13	78	49	0	0	49	1.07
87010--87058	21	2.2	22	85	7	64	46	4	0	48	1.20
87139--87188	20	2.5	20	83	6	66	60	0	0	40	0.97
88774--88808	4	8.8	4	100	0	70	77	0	0	22	0.78
90064--90096	9	3.7	9	88	12	50	60	0	12	27	1.32
103336--103380	19	2.4	19	96	0	81	28	20	20	31	1.97
110294--110377	29	2.9	29	77	8	98	61	8	14	15	1.54
110292--110515	30	7.7	29	71	12	120	58	9	15	16	1.62
111935--111967	3	10.7	3	93	6	57	66	0	0	33	0.92
112178--112672	134	3.7	133	88	2	679	24	17	31	26	1.97
112450--112529	40	2.0	39	83	7	99	26	20	33	20	1.96
112678--112748	28	2.5	28	86	4	90	45	14	15	25	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112894--112957	31	2.0	32	84	3	85	39	12	12	35	1.81
112812--113158	173	2.0	172	94	0	613	38	13	17	29	1.88
113166--113303	64	2.2	62	81	11	147	42	14	12	31	1.83
113483--113543	31	1.9	31	84	15	81	40	13	14	31	1.84
113591--113713	65	1.9	64	86	1	174	42	12	15	30	1.83
114168--114277	36	3.1	36	84	3	143	38	10	18	33	1.84
114284--114489	107	1.9	106	84	6	274	40	11	16	30	1.85
114447--114724	152	1.8	154	84	3	382	39	10	16	33	1.83
115010--115614	4	152.5	4	98	1	1175	25	0	24	49	1.50

Tables:   1

The End!