Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009246.1 Hibiscus syriacus cultivar Beakdansim tig00112887_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 88343
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.30
Found at i:8370 original size:35 final size:35
Alignment explanation
Indices: 8329--8403 Score: 123
Period size: 35 Copynumber: 2.1 Consensus size: 35
8319 TTCATGTTCA
8329 AAATTCCAAAACACTTCAATTACATTCTAAACCCT
1 AAATTCCAAAACACTTCAATTACATTCTAAACCCT
* * *
8364 AAATTCCAAAATACTTCAATTATATTCTAATCCCT
1 AAATTCCAAAACACTTCAATTACATTCTAAACCCT
8399 AAATT
1 AAATT
8404 GAATTATTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.43, C:0.24, G:0.00, T:0.33
Consensus pattern (35 bp):
AAATTCCAAAACACTTCAATTACATTCTAAACCCT
Found at i:9855 original size:21 final size:21
Alignment explanation
Indices: 9826--9878 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
9816 ATTCTGACTA
9826 TCGCATTGCGATTTCCCAAAT
1 TCGCATTGCGATTTCCCAAAT
* * *
9847 TCGCGTTGCGATTTTCCTAAT
1 TCGCATTGCGATTTCCCAAAT
*
9868 TCGCAATGCGA
1 TCGCATTGCGA
9879 ATATGTAAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.34
Consensus pattern (21 bp):
TCGCATTGCGATTTCCCAAAT
Found at i:10805 original size:24 final size:24
Alignment explanation
Indices: 10748--10807 Score: 84
Period size: 24 Copynumber: 2.5 Consensus size: 24
10738 TAATCAGTAT
10748 TCGAAATTTGATCTTGGTCAATAC
1 TCGAAATTTGATCTTGGTCAATAC
* * *
10772 CCGGACTTTGATCTTGGTCAATAC
1 TCGAAATTTGATCTTGGTCAATAC
*
10796 TCGAATTTTGAT
1 TCGAAATTTGAT
10808 GATTTTTCAG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.25, C:0.18, G:0.18, T:0.38
Consensus pattern (24 bp):
TCGAAATTTGATCTTGGTCAATAC
Found at i:13344 original size:20 final size:19
Alignment explanation
Indices: 13316--13370 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 19
13306 TAATCATCTT
*
13316 AATGTCTATCGCAACGCGGA
1 AATGACTATCGCAACGC-GA
*
13336 AATGACTATCGCAATGCGA
1 AATGACTATCGCAACGCGA
**
13355 AATGAAAATCGCAACG
1 AATGACTATCGCAACG
13371 AGAGAATCGC
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 15 0.50
20 15 0.50
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.18
Consensus pattern (19 bp):
AATGACTATCGCAACGCGA
Found at i:13358 original size:19 final size:17
Alignment explanation
Indices: 13323--13473 Score: 77
Period size: 19 Copynumber: 8.8 Consensus size: 17
13313 CTTAATGTCT
*
13323 ATCGCAACGCGGAAATGA
1 ATCGCAATGC-GAAATGA
13341 CTATCGCAATGCGAAATGAAA
1 --ATCGCAATGCGAAATG--A
*
13362 ATCGCAA--CGAGA-GA
1 ATCGCAATGCGAAATGA
13376 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATG--A
*
13395 ATCGCAA--CGAGA-GA
1 ATCGCAATGCGAAATGA
13409 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATG--A
**
13428 ATCGCAA--CG-AGGGA
1 ATCGCAATGCGAAATGA
**
13442 ATCGCAAAACGAAATGAAA
1 ATCGCAATGCGAAATG--A
13461 ATCGCAATGCGAA
1 ATCGCAATGCGAA
13474 TTTAGTTTCG
Statistics
Matches: 103, Mismatches: 11, Indels: 35
0.69 0.07 0.23
Matches are distributed among these distances:
14 24 0.23
16 14 0.14
17 14 0.14
19 41 0.40
20 9 0.09
21 1 0.01
ACGTcount: A:0.44, C:0.19, G:0.24, T:0.13
Consensus pattern (17 bp):
ATCGCAATGCGAAATGA
Found at i:13380 original size:14 final size:14
Alignment explanation
Indices: 13361--13448 Score: 59
Period size: 14 Copynumber: 5.6 Consensus size: 14
13351 GCGAAATGAA
13361 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
13375 AATCGCAATGCGAAATGAA
1 AATCGCAA--CG--A-GAG
13394 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
13408 AATCGCAATGCGAAATGAA
1 AATCGCAA--CG--A-GAG
*
13427 AATCGCAACGAGGG
1 AATCGCAACGAGAG
13441 AATCGCAA
1 AATCGCAA
13449 AACGAAATGA
Statistics
Matches: 59, Mismatches: 5, Indels: 20
0.70 0.06 0.24
Matches are distributed among these distances:
14 27 0.46
15 2 0.03
16 4 0.07
17 4 0.07
18 2 0.03
19 20 0.34
ACGTcount: A:0.44, C:0.19, G:0.25, T:0.11
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:13385 original size:33 final size:33
Alignment explanation
Indices: 13343--13467 Score: 223
Period size: 33 Copynumber: 3.8 Consensus size: 33
13333 GGAAATGACT
13343 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
13376 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
*
13409 ATCGCAATGCGAAATGAAAATCGCAACGAGGGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
**
13442 ATCGCAAAACGAAATGAAAATCGCAA
1 ATCGCAATGCGAAATGAAAATCGCAA
13468 TGCGAATTTA
Statistics
Matches: 89, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 89 1.00
ACGTcount: A:0.46, C:0.18, G:0.23, T:0.12
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
Found at i:13516 original size:33 final size:33
Alignment explanation
Indices: 13479--13558 Score: 115
Period size: 33 Copynumber: 2.4 Consensus size: 33
13469 GCGAATTTAG
* *
13479 TTTCGCGTTGCGATTTTGTCGTTGCGATTTTCA
1 TTTCGCGTTGCGATTCTCTCGTTGCGATTTTCA
* *
13512 TTTCGCGTTGTGATTCTCTCGTTGCGATTTTTA
1 TTTCGCGTTGCGATTCTCTCGTTGCGATTTTCA
*
13545 TTTCGCATTGCGAT
1 TTTCGCGTTGCGAT
13559 AGTCATTTTT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 41 1.00
ACGTcount: A:0.10, C:0.19, G:0.23, T:0.49
Consensus pattern (33 bp):
TTTCGCGTTGCGATTCTCTCGTTGCGATTTTCA
Found at i:13684 original size:14 final size:14
Alignment explanation
Indices: 13665--13701 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
13655 CATCAATTAA
13665 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
13679 ACAAATCATCTTTT
1 ACAAATCAACTTTT
13693 ACAAATCAA
1 ACAAATCAA
13702 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:15117 original size:21 final size:21
Alignment explanation
Indices: 15051--15117 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
15041 GTGAATCGGG
*
15051 CTCTTGAATGGTGGGA-GGGA
1 CTCTTGAACGGTGGGAGGGGA
* * ** * *
15071 CCTCTTCAACGATGACAGTGGC
1 -CTCTTGAACGGTGGGAGGGGA
15093 CTCTTGAACGGTGGGAGGGGA
1 CTCTTGAACGGTGGGAGGGGA
15114 CTCT
1 CTCT
15118 CGAGGAATGA
Statistics
Matches: 32, Mismatches: 13, Indels: 2
0.68 0.28 0.04
Matches are distributed among these distances:
21 30 0.94
22 2 0.06
ACGTcount: A:0.19, C:0.21, G:0.36, T:0.24
Consensus pattern (21 bp):
CTCTTGAACGGTGGGAGGGGA
Found at i:15136 original size:42 final size:41
Alignment explanation
Indices: 15051--15173 Score: 113
Period size: 42 Copynumber: 2.9 Consensus size: 41
15041 GTGAATCGGG
* * * *
15051 CTCTTGAATGGTGGGA-GGGACCTCTTCAACGATGACAGTGGC
1 CTCTTGAACGGTGGGAGGGGA-CTC-TCGAGGATGACAGGGGC
*
15093 CTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAGGGGC
1 CTCTTGAACGGTGGGAGGGGACTCTCGAGG-ATGACAGGGGC
* * * * *
15135 CTCTTCAACGATAGGAGTGGACTCTTGAGGGATGACAGG
1 CTCTTGAACGGTGGGAGGGGACTCTCGA-GGATGACAGG
15174 TGAGTCGGGC
Statistics
Matches: 67, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
41 4 0.06
42 57 0.85
43 6 0.09
ACGTcount: A:0.23, C:0.19, G:0.37, T:0.22
Consensus pattern (41 bp):
CTCTTGAACGGTGGGAGGGGACTCTCGAGGATGACAGGGGC
Found at i:15610 original size:19 final size:19
Alignment explanation
Indices: 15570--15715 Score: 149
Period size: 19 Copynumber: 7.8 Consensus size: 19
15560 TCTGGAACTT
*
15570 AAAATCGCAACGTGAAAAATG
1 AAAATCGCAACGCG--AAATG
**
15591 ACTATCGCAACGCGAAATG
1 AAAATCGCAACGCGAAATG
*
15610 AAAATCGCAACGAGACAATG
1 AAAATCGCAACGCGA-AATG
*
15630 AAAATCGCAACGCGAAACG
1 AAAATCGCAACGCGAAATG
*
15649 AAAATCGCAACGCGAAATA
1 AAAATCGCAACGCGAAATG
15668 AAAATCGCAA--CG--A-G
1 AAAATCGCAACGCGAAATG
* * *
15682 AGAATCGCAATGCGAAATT
1 AAAATCGCAACGCGAAATG
15701 AAAATCGCAACGCGA
1 AAAATCGCAACGCGA
15716 TTATAGTTTC
Statistics
Matches: 104, Mismatches: 15, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
14 9 0.09
15 1 0.01
16 2 0.02
17 2 0.02
18 1 0.01
19 60 0.58
20 18 0.17
21 11 0.11
ACGTcount: A:0.47, C:0.21, G:0.20, T:0.12
Consensus pattern (19 bp):
AAAATCGCAACGCGAAATG
Found at i:15639 original size:39 final size:38
Alignment explanation
Indices: 15570--15715 Score: 140
Period size: 39 Copynumber: 3.9 Consensus size: 38
15560 TCTGGAACTT
* ** *
15570 AAAATCGCAACGTGAAAAATGACTATCGCAACGCGAAATG
1 AAAATCGCAAC--GAGAAATGAAAATCGCAACGCGAAACG
15610 AAAATCGCAACGAGACAATGAAAATCGCAACGCGAAACG
1 AAAATCGCAACGAGA-AATGAAAATCGCAACGCGAAACG
* *
15649 AAAATCGCAACGCGAAATAAAAATCGCAA--CG--A-G
1 AAAATCGCAACGAGAAATGAAAATCGCAACGCGAAACG
* * * *
15682 AGAATCGCAATGCGAAATTAAAATCGCAACGCGA
1 AAAATCGCAACGAGAAATGAAAATCGCAACGCGA
15716 TTATAGTTTC
Statistics
Matches: 93, Mismatches: 9, Indels: 12
0.82 0.08 0.11
Matches are distributed among these distances:
33 27 0.29
34 1 0.01
35 2 0.02
36 2 0.02
38 16 0.17
39 34 0.37
40 11 0.12
ACGTcount: A:0.47, C:0.21, G:0.20, T:0.12
Consensus pattern (38 bp):
AAAATCGCAACGAGAAATGAAAATCGCAACGCGAAACG
Found at i:15803 original size:19 final size:20
Alignment explanation
Indices: 15721--15798 Score: 122
Period size: 20 Copynumber: 4.0 Consensus size: 20
15711 CGCGATTATA
15721 GTTTCGCGTTGCGATTTTTG
1 GTTTCGCGTTGCGATTTTTG
*
15741 GTTTCGCGTTGCAATTTTTG
1 GTTTCGCGTTGCGATTTTTG
* *
15761 GTTTGGCGTTGCGA-TTTTC
1 GTTTCGCGTTGCGATTTTTG
15780 GTTTCGCGTTGCGATTTTT
1 GTTTCGCGTTGCGATTTTT
15799 ATTTCAACCA
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
19 17 0.33
20 35 0.67
ACGTcount: A:0.06, C:0.15, G:0.28, T:0.50
Consensus pattern (20 bp):
GTTTCGCGTTGCGATTTTTG
Found at i:16006 original size:94 final size:94
Alignment explanation
Indices: 15894--16269 Score: 593
Period size: 94 Copynumber: 4.1 Consensus size: 94
15884 ATGGATTGCA
* * * * *
15894 TTAC-TTCAACCAAAAGACAAAACAAAGACAAATATTAACTTTAGAGTATTAAAGAATATACAGT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGT
*
15958 TTAGCAGAATTGGCAGCAAACGAACAAAT
66 TTAGCAGAATTGGCAGCAACCGAACAAAT
15987 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGT
*
16052 TTAGCAGAATTGGCAGCAACCAAACAAAT
66 TTAGCAGAATTGGCAGCAACCGAACAAAT
*
16081 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAAT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGT
*
16146 TTAGCAGAATTGGCAGCAACCGAATAAAT
66 TTAGCAGAATTGGCAGCAACCGAACAAAT
*
16175 TTAC-TTCAACCAAAAGACAAAACAAAAGACAAATACTAACTTCACAGTGTT----AATAAACAG
1 TTACTTTCAACCAAAAGACAAAAC-AAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAG
* *
16235 TTTAGCAGTATTGGCAGCAACCGAATAAAT
65 TTTAGCAGAATTGGCAGCAACCGAACAAAT
16265 TTACT
1 TTACT
16270 AAGCAATCTA
Statistics
Matches: 267, Mismatches: 13, Indels: 8
0.93 0.05 0.03
Matches are distributed among these distances:
90 40 0.15
93 23 0.09
94 204 0.76
ACGTcount: A:0.48, C:0.18, G:0.12, T:0.22
Consensus pattern (94 bp):
TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGT
TTAGCAGAATTGGCAGCAACCGAACAAAT
Found at i:17995 original size:20 final size:20
Alignment explanation
Indices: 17970--18065 Score: 82
Period size: 20 Copynumber: 5.2 Consensus size: 20
17960 TTTTGGTTGA
17970 AATGAAAATCGCAACGAGAG
1 AATGAAAATCGCAACGAGAG
*
17990 AATGAAAATCGCAACGCG-G
1 AATGAAAATCGCAACGAGAG
** *
18009 AAATGACTATCACAAC--GAG
1 -AATGAAAATCGCAACGAGAG
*
18028 -A-G--AATCGCAACGCGA-
1 AATGAAAATCGCAACGAGAG
18043 AATGAAAATCGCAACGAGAG
1 AATGAAAATCGCAACGAGAG
18063 AAT
1 AAT
18066 CGCAACGCGA
Statistics
Matches: 60, Mismatches: 7, Indels: 18
0.71 0.08 0.21
Matches are distributed among these distances:
14 7 0.12
16 4 0.07
17 2 0.03
18 1 0.02
19 14 0.23
20 32 0.53
ACGTcount: A:0.47, C:0.19, G:0.23, T:0.11
Consensus pattern (20 bp):
AATGAAAATCGCAACGAGAG
Found at i:18058 original size:33 final size:33
Alignment explanation
Indices: 17968--18089 Score: 145
Period size: 33 Copynumber: 3.5 Consensus size: 33
17958 TCTTTTGGTT
17968 GAAATGAAAATCGCAACGAGAGAATGAAAATCGCAACGC
1 GAAATGAAAATCGCAAC--GAG-A-G--AATCGCAACGC
** *
18007 GGAAATGACTATCACAACGAGAGAATCGCAACGC
1 -GAAATGAAAATCGCAACGAGAGAATCGCAACGC
18041 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
*
18074 GAAACGAAAATCGCAA
1 GAAATGAAAATCGCAA
18090 TGCAATTTTG
Statistics
Matches: 75, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
33 45 0.60
34 11 0.15
36 1 0.01
37 1 0.01
38 3 0.04
40 14 0.19
ACGTcount: A:0.47, C:0.20, G:0.23, T:0.10
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:18068 original size:14 final size:14
Alignment explanation
Indices: 18021--18072 Score: 50
Period size: 14 Copynumber: 3.4 Consensus size: 14
18011 ATGACTATCA
18021 CAACGAGAGAATCG
1 CAACGAGAGAATCG
*
18035 CAACGCGAAATGAAAATCG
1 CAA--CG--A-GAGAATCG
18054 CAACGAGAGAATCG
1 CAACGAGAGAATCG
18068 CAACG
1 CAACG
18073 CGAAACGAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 10
0.72 0.05 0.23
Matches are distributed among these distances:
14 15 0.48
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.32
ACGTcount: A:0.44, C:0.23, G:0.25, T:0.08
Consensus pattern (14 bp):
CAACGAGAGAATCG
Found at i:18148 original size:33 final size:33
Alignment explanation
Indices: 18104--18195 Score: 130
Period size: 33 Copynumber: 2.8 Consensus size: 33
18094 ATTTTGGTTT
*
18104 CTCGTTACGATTTTCATTTCACGTTGTAATTCC
1 CTCGTTGCGATTTTCATTTCACGTTGTAATTCC
** * *
18137 CTCGTTGCGATTTTCATTTTGCGTTGTGATTCT
1 CTCGTTGCGATTTTCATTTCACGTTGTAATTCC
*
18170 CTCGTTGCGATTTTCATTTCTCGTTG
1 CTCGTTGCGATTTTCATTTCACGTTG
18196 CGATAGTAAT
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 52 1.00
ACGTcount: A:0.12, C:0.22, G:0.17, T:0.49
Consensus pattern (33 bp):
CTCGTTGCGATTTTCATTTCACGTTGTAATTCC
Found at i:18177 original size:19 final size:19
Alignment explanation
Indices: 18155--18220 Score: 62
Period size: 19 Copynumber: 3.4 Consensus size: 19
18145 GATTTTCATT
*
18155 TTGCG-TTGTGATTCTCTCG
1 TTGCGATTGTCATT-TCTCG
*
18174 TTGCGATTTTCATTTCTCG
1 TTGCGATTGTCATTTCTCG
* * *
18193 TTGCGATAGTAATTTCCGCG
1 TTGCGATTGTCATTT-CTCG
18213 TTGCGATT
1 TTGCGATT
18221 TTTATTCTTG
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
19 22 0.58
20 16 0.42
ACGTcount: A:0.12, C:0.20, G:0.23, T:0.45
Consensus pattern (19 bp):
TTGCGATTGTCATTTCTCG
Found at i:18813 original size:21 final size:21
Alignment explanation
Indices: 18767--18840 Score: 107
Period size: 20 Copynumber: 3.6 Consensus size: 21
18757 CGATAGTCAG
18767 ATTCGCATTGCGATTTACGT-
1 ATTCGCATTGCGATTTACGTA
* *
18787 ATTCGCATTGCGATTTTCCTA
1 ATTCGCATTGCGATTTACGTA
18808 ATTCGCATTGCGATTTACGTA
1 ATTCGCATTGCGATTTACGTA
*
18829 A-TCGCGTTGCGA
1 ATTCGCATTGCGA
18841 ATTAGGAAAA
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
20 28 0.58
21 20 0.42
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.38
Consensus pattern (21 bp):
ATTCGCATTGCGATTTACGTA
Found at i:18855 original size:41 final size:41
Alignment explanation
Indices: 18769--18862 Score: 107
Period size: 41 Copynumber: 2.3 Consensus size: 41
18759 ATAGTCAGAT
* * * * *
18769 TCGCATTGCGATTTACGTATTCGCATTGCGATTTTCCTAAT
1 TCGCATTGCGATTTACGTAATCGCATTGCGAATTACCAAAA
* **
18810 TCGCATTGCGATTTACGTAATCGCGTTGCGAATTAGGAAAA
1 TCGCATTGCGATTTACGTAATCGCATTGCGAATTACCAAAA
*
18851 TCGCAATGCGAT
1 TCGCATTGCGAT
18863 AGTCAGAATC
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
41 44 1.00
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.34
Consensus pattern (41 bp):
TCGCATTGCGATTTACGTAATCGCATTGCGAATTACCAAAA
Found at i:20251 original size:21 final size:22
Alignment explanation
Indices: 20213--20265 Score: 81
Period size: 21 Copynumber: 2.5 Consensus size: 22
20203 ATCGTGGGAC
*
20213 TAATAGTGACGTTTTTTTTGGA
1 TAATAGTAACGTTTTTTTTGGA
20235 TAATAGTAACG-TTTTTTTGGA
1 TAATAGTAACGTTTTTTTTGGA
*
20256 TAACAGTAAC
1 TAATAGTAAC
20266 CAACTTTTAC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
21 19 0.66
22 10 0.34
ACGTcount: A:0.30, C:0.08, G:0.19, T:0.43
Consensus pattern (22 bp):
TAATAGTAACGTTTTTTTTGGA
Found at i:21814 original size:646 final size:647
Alignment explanation
Indices: 20331--28978 Score: 5652
Period size: 650 Copynumber: 13.1 Consensus size: 647
20321 TATCCACAAA
*
20331 GATAAAGAAAAGACAACAGAAGAAGTTAACGATTTAGGTAGTCGAGTCAAACACAGGGATCCATT
1 GATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAGGGATCCATT
20396 TTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCGATTGTGGA
66 TTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCGATTGTGGA
* * *
20461 ACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGGCCGTC-ATCTGTGGGAATCTAA
131 ACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGCCGAT-TGTGGGAATCGAA
* *
20525 CCCACAACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGACTTCGTTAAGTGG
195 CCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCTTCGTTAAGTGG
*
20590 TCTAACATAGTGAATATTGGCACTACAAATATGTCCACGATGTTGGGATTCCATCTTTATTTAAT
260 TCTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTTTATTTAAT
20655 GGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGAGTTTCCCC
325 GGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGAGTTTCCCC
* *
20720 CAAAAGCCCAAACGAAGTTGACGACCTTAAACGCCACGAACTTTTGTTACTGTGGAAAGTAAAAG
390 CAAAAGCCCAAACGAAGTTGACGACCCTAAACGCCACGAACTTTTGATACTGTGGAAAGTAAAAG
20785 GTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAATGACACGC
455 GTGTGCTCATTGCCCAATAATATTC---AAATAAATCTAAGAATGAGCTTGAGTAAATGACACGC
* *
20850 CAAGGGCCTTTTCGTCTTCAAAAATTATGAACAATGAACAACAGGACAAAATCAGAATTTCAAAT
517 CAAGGGCCTTTTCATCTTCAAAAATTATGAACAATGAACAACAGGACAAAATCAGAATCTCAAAT
*
20915 ATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCGTCTATAACTACACCCAA
582 ATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAACTACACCCAA
*
20980 T
647 C
*
20981 GATAAAGAAACGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAGGGATCCATT
1 GATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAGGGATCCATT
*
21046 TTACCAAGGCTAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCGATTGTGGA
66 TTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCGATTGTGGA
* *
21111 ACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGAGACCGCCGACTGTGGGAATCGAAC
131 ACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGCCGATTGTGGGAATCGAAC
* * *
21176 CCACGACCACATAGTTAAAAGCCATGCACTCTACCAGCTGAGCTAAGACGGATTCGTTAAGTGGT
196 CCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCTTCGTTAAGTGGT
*
21241 CTAACATAGTGAATATTGGCACTACTAATATGTCCACGACGTTGGGATTCCATCTTTATTTAATG
261 CTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTTTATTTAATG
*
21306 GTTTCTTGTTGAAATAGTTATTTTTCCAAACATGAGCCAAGTTTGGCAAAATCAGAGTTTCCCCC
326 GTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGAGTTTCCCCC
* *
21371 AAAAGCCCTAACGAAGTTGACGACCCTAAACGCCACGAACTTTTGATACCGTGGAAAGTAAAAGG
391 AAAAGCCCAAACGAAGTTGACGACCCTAAACGCCACGAACTTTTGATACTGTGGAAAGTAAAAGG
*
21436 TGTGCTCATTGCCCAATAATATTC-AATAAATCTAAGAATGAGCTTGAGTAAATGACATGCCAAG
456 TGTGCTCATTGCCCAATAATATTCAAATAAATCTAAGAATGAGCTTGAGTAAATGACACGCCAAG
*
21500 GGCCTTTTCATCTTCAAAAATTATGAACAATGAACAACAGGACAAAATCGGAATCTCAAATATTA
521 GGCCTTTTCATCTTCAAAAATTATGAACAATGAACAACAGGACAAAATCAGAATCTCAAATATTA
21565 TAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAACTACACCCAAC
586 TAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAACTACACCCAAC
* *
21627 GATAAAGAAAAGACAACATAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAGGTATCCATT
1 GATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAGGGATCCATT
* * *
21692 TTACCAAGGCAAACATATGACATGCAACAAACATTTCAAAATATGCAGAATTATCCGATCGTGGA
66 TTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCGATTGTGGA
* * *
21757 ACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTAATCGCCGATTGTGGGAATCAAAC
131 ACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGCCGATTGTGGGAATCGAAC
21822 CCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCTTCGTTAAGTGGT
196 CCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCTTCGTTAAGTGGT
* * *
21887 CTAACATAGTGAATATTGGCACTACAAATACGTCCACGATGTTGGTATTCCATCTTTATTTAATG
261 CTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTTTATTTAATG
* *
21952 GTTTCTTGTTGAAATATTTATTTTTCCAAACTTGAGCTAAGTTTGGCAAAATCAGAGTTTCCCCC
326 GTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGAGTTTCCCCC
* *
22017 AAAAGCCCAAACGAAGTTGACGACCCTAAACGCCATGAACTTTTGTTACTGTGGAAAGTAAAAGG
391 AAAAGCCCAAACGAAGTTGACGACCCTAAACGCCACGAACTTTTGATACTGTGGAAAGTAAAAGG
*
22082 TGTGCTCATTGCCCAATAATATTCAATAAATAATCTAAGAATGAGCTTGAGTAAATGACACGCCA
456 TGTGCTCATTGCCCAATAATATTCAA-ATA-AATCTAAGAATGAGCTTGAGTAAATGACACGCCA
* *
22147 AGGGCCTTTTCATCTTCAAAAATTCTGAACAATGAACAACAGGATAAAATCAGAATCTCAAATAT
519 AGGGCCTTTTCATCTTCAAAAATTATGAACAATGAACAACAGGACAAAATCAGAATCTCAAATAT
*
22212 TATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAATTACACCCAAC
584 TATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAACTACACCCAAC
* * *
22276 GATAAAGAAAAGACAACATAAGAAGTTAATGATTTTGGTAGTCGAGTCAAACACAGGGATCTATT
1 GATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAGGGATCCATT
*
22341 TTACCAAGGCAAACATATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCGATTGTGGA
66 TTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCGATTGTGGA
* ** * *
22406 ACAATCAAGCAATGAGGAAATGGCAAAAGAGAGTGAAGAGTGATTGCCGATTGTGGGAATTGTAC
131 ACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGCCGATTGTGGGAATCGAAC
* *
22471 CCACGACCACATAGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCTTCGATAAGTGGT
196 CCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCTTCGTTAAGTGGT
22536 CTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTTTATTTAATG
261 CTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTTTATTTAATG
*
22601 GTTTCTTGTAGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGAGTTTCCCCC
326 GTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGAGTTTCCCCC
* *
22666 AAAAGCCCAAACGAAGTTGACGACCCTAAACACCATGAACTTTT-ATTACTGTGGAAAGTAAAAG
391 AAAAGCCCAAACGAAGTTGACGACCCTAAACGCCACGAACTTTTGA-TACTGTGGAAAGTAAAAG
* * *
22730 GTGTGCCCATTTCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAATGACACGA
455 GTGTGCTCATTGCCCAATAATATTC---AAATAAATCTAAGAATGAGCTTGAGTAAATGACACGC
* * * * *
22795 CAAAGGCCTTTTCGTCTTCAAAAATTCTGAACAATGAACAATAGGACAAAATCGGAATCTCAAAT
517 CAAGGGCCTTTTCATCTTCAAAAATTATGAACAATGAACAACAGGACAAAATCAGAATCTCAAAT
* * *
22860 ATTATAGAAAATACCAATCTTATCCTTAAATGGTTCTTGATCCCCGCTTCTATGACTACACCCAA
582 ATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAACTACACCCAA
22925 C
647 C
* * *
22926 GATAAAGAAAAGACAACAAAAGAAGTTAATGGTTTAGGTAGTCGAGTCAAACACAGGGATCTATT
1 GATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAGGGATCCATT
*
22991 TTACCAAGGCAAACAGATGACATGCTACAAATATTTCAAAATATGCAGAATTATCCGATTGTGGA
66 TTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCGATTGTGGA
* * * *
23056 ATAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGGCCGCCGACTGTGGGAATAGAAC
131 ACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGCCGATTGTGGGAATCGAAC
* * * *
23121 CCAAGACCATATGGTTAAAAGCCATGCGCTCTACCAGGTGAGCTAAAACGGCTTCGTTAAGTGGT
196 CCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCTTCGTTAAGTGGT
*
23186 CTAACATAGTGAATATTGGCACTACAAATATGTCAACGACGTTGGGATTCCATCTTTATTTAATG
261 CTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTTTATTTAATG
*
23251 GTTTCCTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGAGTTTCCCCC
326 GTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGAGTTTCCCCC
* * * * *
23316 AAAAGCCCAAACGAAGTTGATGACCTTAAACGCTACGAACTTTTGTTACTGTTGTAACA-TCCCA
391 AAAAGCCCAAACGAAGTTGACGACCCTAAACGCCACGAACTTTTGATACTG-TGGAA-AGT---A
* ** * ** * *
23380 AACTACGGGTTAGTGACTTTATTG-TAAAGTTTTAGAATTTATTGATTTAAA--TAGGAAT-A-T
451 AA--A--GG-T-GTG-C-TCATTGCCCAA----T--AA--TATTCAAATAAATCTAAGAATGAGC
* ** * * ** *** ** **
23440 TTCAGTTGGATTA-A-G---TGGTGAATATGAAAGAATT-AAAAGGATAGTATGGTAA-TTTAGA
500 TTGAG-TAAATGACACGCCAAGG-GCCT-TTTCA-TCTTCAAAA--AT--TAT-G-AACAAT-GA
** * * *** * * *** ** **
23498 TTAA-AAGATATTGTCA-TATCTC---TATT-TAGAGAGATACACGTGGAAGATGAGATAATTCT
554 ACAACAGGACAAAATCAGAATCTCAAATATTATAGA-AAATAC-C-----A-ATCTTATCCTTAA
* * * *** *
23557 CCAGAGTTATCT-ACTCCTCTTTG-TTCT-TAA-T--ACGTGAG
611 AC-G-GTT-CCTGA-TCC-C--CGCTTCTATAACTACACCCAAC
* * ** ** * * ** * * ** *
23595 GCT--TG--AAG-CATGAGGTG-AGTT-TTCAGATTTGTTGGTTA-T-TTGTTAAATTA-AAAGT
1 GATAAAGAAAAGACAACAGAAGAAGTTAAT--GA-TT-TAGG-TAGTCGAGTCAAA-CACAGGGA
*** * ** * * * * ** *** *
23650 TAGGTTTTGATC-A-TTAGA-AGATAACTAAGCTTAAGGAAAGC-TTT---TGT-TGCCTTATAA
60 TCCATTTT-ACCAAGGCAAACAGATGAC-ATGC-T-A-CAAA-CATTTCAAAATATGCAGAATTA
* ** * * ** ** ** *
23707 T-CAAAAGAT-GAAGAAGTTATAAG-AA--ATTAAA--G-AAAACGAGTTTTTATA-TGA-----
119 TCCGATTG-TGGAACAA--T-CAAGCAACGAGGAAATGGCAAAA-GAGAGTGAAGAGTGACCGCC
* * * * **** ** * * * * * * *
23758 AATTATGGAAAAAAGTTGATA-AGTTGA--ATTTGAAGTTAAATTTGACTTGTC-ATCATGCTAA
179 GATTGTGG---GAA-TCGA-ACCCACGACCACATG--GTTAAA--AGCCATG-CGCTC-TACCAG
* ** * * * * * * * * ** * *
23819 TTAAGAAATATGAAGTG-TTAG--AATTGTGTTTAGAACATATTGAA-ATTTG-AGTATGATTCT
233 CT--GAGCTAAGACG-GCTTCGTTAAGTG-GTCT--AACATAGTGAATATTGGCACTACAAAT-A
** ** * *** * * * * **
23879 TGATTTAC-ATATGAGGGATAGGAT-TTTGAGGTTATGGATGGTTTTCATG--GATATAAATTGG
291 TG-TCCACGACGT-TGGGATTCCATCTTT-A--TT-T-AATGG-TTTCTTGTTGAAAT-AGTTAT
**** ** * * *** * ***** * **** *
23940 TTTAAGTAA-TGGTG-GTTAGGTTTAATGACATGGT-AGGGGTTTAAAATAGAAGAATTGAATGA
347 TTTTCCAAACT--TGAGCCAAG-TT--TGGCAAAATCA-GAGTTTCCCCCAAAAG-CCCAAACGA
* * ** * * ** *
24002 AGAATTGATGATTTTCGGGCTTAAA--ATA-TAA-TTTATGGGTAGAG-GGAACTGATACCCTAT
405 AG--TTGACGA----C---CCTAAACGCCACGAACTTT-T-GATACTGTGGAA-AG-TA----A-
* * * * * * * * *** *
24062 GAATGG-GT-ATCGATTCCCCCCTCTTGAAGGAAAAATTCCAGTATAT-TCAGGGGGTATCGATT
452 -AA-GGTGTGCTC-ATT---GCC-C---AA--TAATATTCAAATAAATCTAAGAATG-A--GCTT
*** * ** ** *** * *** *
24124 CCCCCTAAATGA-A---AAATAGAATTTGGTTCTT---TAATT-TGGTTTAAGTTGTTAACATCA
502 --GAGTAAATGACACGCCAAGGGCCTTTTCATCTTCAAAAATTAT-GAACAA--TG--AACAAC-
*** ** * ** ** * * *** *
24181 AGTTTAAGGTTTAGGCT-TCTGATAGTTGTTTTG-AAATGTTATAT-TTAT--GTAGATATCGAG
559 AGGACAA-AATCAGAATCTCAAATA--T-TATAGAAAATACCA-ATCTTATCCTTA-A-A-CG-G
** ** * * * ***
24241 -T-CT-AAACAAGTTTCGGAATAA-TCAAAGGATTAGGATC
615 TTCCTGATCCCCGCTTC--TATAACT-ACA--CCCA--A-C
* ** * * * *
24278 GAATCAAAGCAAATAAGGCTAAGGTGAGTGCAATTTTAATTGTACTTATA-TTATTTAACGAACA
1 G-AT-AAAG--AA-AAGAC-AA-CAGA-AG-AA-GTTAA-TG-A-TT-TAGGTA-GT--CG---A
* ** * ** * * * * * **
24342 TTGGCTTGCGATGAGCTAGTGATAGA-GTTACTATGGTAAGA-AG-TGAC-TCCTA-AAATGTTA
46 ---G--T-CAAACA-C-AGGGATCCATTTTACCAAGGCAA-ACAGATGACATGCTACAAACATT-
** * * ** * ** * * * * * ** * *
24402 T-TTAATTTG-TG-A-T-TCTTATATGTGCATGAATACATGAAATG-GG-TATAGGTTATTATAT
101 TCAAAATATGCAGAATTATCCGAT-TGTGGAACAAT-CAAGCAACGAGGAAAT-GG-CAAAAGAG
* * ** * ** * * ** ** * * * * * * **
24460 ATGTTATATGATATGCATAGAC-A-TAAGAGCATAAAACATAAGA-TATATGATATGATATACAT
162 A-GTGA-A-GA-GTG-ACCGCCGATTGTGGGAATCGAACCCACGACCACATGGT-TAAAAGCCAT
** * * ** * * * * ** * *
24522 G-ATTATATGCATATGTGAT-ATA-TGCTAT-GAGACA-T-GAC-CA-AT-GTGAA-A-TGAG-A
221 GCGCTCTA-CCAGCTGAGCTAAGACGGCT-TCGTTA-AGTGGTCTAACATAGTGAATATTG-GCA
** * * * * * * * * ** * * **
24575 -TA-AGCTATGT-GA-TATGATAT-GAAATACATGGTTACACATACATGTGGTAT-GTGACAGAA
282 CTACAAATATGTCCACGACG-T-TGGGATTCCAT-CTT-TATTTA-A--TGGTTTCTTG-TTGAA
***** * * ** * * **** *
24634 A-AG--A-AAGAAC-AAGTGATGAG-AAATGTATTCATCGTAAATGCCCATAGTATATGATACGA
339 ATAGTTATTTTTCCAAACT--TGAGCCAA-GT-TT-GGC-AAAAT---CAGAGT-T-TCCCCCAA
* * * * * * ** * *
24693 GAG-CTATAGGTATAGTT-A-GCATGCC-AAGA-G--TCGAGGGTATTGTAGTCCT-TCGGGATT
393 AAGCCCAAACG-A-AGTTGACG-A-CCCTAA-ACGCCACGA-ACTTTTG-A-TACTGT--GGA--
* *** * * ** * * * * * * * * * **
24750 TAGTCATTCGGGACGTAG-TCCTT-CGGGACGTAGTGGTCCTACGAGACATATATAGCA-GTCCT
446 AAGT-A-AAAGG-TGT-GCTCATTGC-CCA-ATAAT-ATTC-A-AATAAATCTA-AGAATGAGCT
* * * ** ** * * * * ** * **
24812 TCGGGATGAATACTGA-A--CAAATGTTCGGTGC-CCATGAGGGAATT-T-ATACGAGCTGTAGT
501 T-GAG-T-AA-A-TGACACGCCAAGGGCCTTTTCATCTTCA-AAAATTATGA-AC-A-ATG-AAC
* * * * * * * * * ** * ** **
24871 GATA-G-CATTAGTGCACAACCTC-AAT-GTACT--CACATACCTTTGTTATCAAT-AACAATAT
556 AACAGGACA-AAAT-CAGAATCTCAAATATTA-TAGAAAATACCAATCTTATCCTTAAACGGT-T
* *** ** * * *** *
24929 AC--ATGGGCAATT-GA-AA-TATAAATTAAA
617 CCTGATCCCCGCTTCTATAACTA-CACCCAAC
* ** * * * * * **
24956 G-TGAAAGTGAAAGTGATGCA-AAG-TGGTAA-G-TTTCA--T-GT-GTG-CATA-AC-TTGAT-
1 GAT-AAAG-AAAAGACA-ACAGAAGAAGTTAATGATTT-AGGTAGTCGAGTCAAACACAGGGATC
* * ** * * * * * * *
25008 TATATATGTCATATG-AAATATAT-ACATGCATATTGAAATATCATGATC-AAAT-GGTAAGAAT
62 CAT-TTTACCA-AGGCAAACAGATGACATGC-TA---CAA-A-CAT-TTCAAAATATG-CAGAAT
* * ** * * ** ** * * * *
25069 GCATATTCATGAATCTACTGTTACATGTTTATTTATTGCCTC-A-CTAA-GTCTATGACGTAGCG
117 ---TA-TC-CG-AT-T-GTGGAACA-----A-TCA-AGCAACGAGGAAATGGC-A-AAAG-AGAG
* **** * * * * * * ** * ** *
25131 TGTA-AGTGATTTAC-A-CGTAGGTACCAAGAAACGA-GAAGAGCAAGAATAGAAGTAG-CAAG-
164 TGAAGAGTGACCGCCGATTGTGGGAATC--GAACCCACGACCA-CATGGTTA-AA--AGCCATGC
* * ** * * * ** * * * *
25190 GATAGTATTA--TTA-CTAGAAGACCAG-ATCAG--AAGTAATC-GACAAAGTAGGTATTTTGTT
223 GCT-CTACCAGCTGAGCT--AAGA-CGGCTTC-GTTAAGTGGTCTAACATAGT--GAATATTG--
** * ** * * *** ** * * ** **
25248 G-TGTATAAAGTGTTGGCATGTAATAAGTCGTTAATTATGAGCACTCTGATCGAGTTTGTATTTT
279 GCACTACAAA----T---ATGT-CCACGACGTT-GGGAT-TCCA-TCT--T-TATTTAATGGTT-
* ** * *
25312 GTGGTCTCTTTTATGTAAATTAACG-TATTTTGTTTTAAAC---A---AAGTTT--TAAATTCCC
329 ------TCTTGT-TG-AAA-T-A-GTTA-TTT-TTCCAAACTTGAGCCAAGTTTGGCAAAAT--C
* * * *** ** * * * * ** *
25368 GGGGTTTTTCGTTATTAGTCAAAGTATTGAAAAGTCAAAGTGACACATCGGACTCGTATTCGAGT
379 AGAG-TTTCCCCCAAAAGCCCAA--A-CG--AAGT-----TG----A-C-GAC-CCTAAAC--GC
** * * * *
25433 CGGGTACGGGTTGGGGTGTTACAACTGTGGAAAGTAAAAGGTGCGCTCATTGCCCAATAATATTC
424 CACGAAC---TT----T-TGA-TACTGTGGAAAGTAAAAGGTGTGCTCATTGCCCAATAATATTC
* * *
25498 AATAAATAAATCTAAGAATGAGCTTGAGTAAATGACACGCCAACGGACTTTTCGTCTTCAAAAAT
480 ---AAATAAATCTAAGAATGAGCTTGAGTAAATGACACGCCAAGGGCCTTTTCATCTTCAAAAAT
* * *
25563 TCTGAACAATGAACAACAGGACAATATC-GAAATCTCAAATATTATAGAAAATACCAATATTATC
542 TATGAACAATGAACAACAGGACAAAATCAG-AATCTCAAATATTATAGAAAATACCAATCTTATC
* *
25627 CTTAAACGGTTCCTGATTCCCGCTTCTATAACTACACCCAGC
606 CTTAAACGGTTCCTGATCCCCGCTTCTATAACTACACCCAAC
*
25669 GATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAGGTATCCATT
1 GATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAGGGATCCATT
25734 TTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCGATTGTGGA
66 TTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCGATTGTGGA
* * * *
25799 ACAATCAAGCAACGAGGAAATGGAAAAAGAGAGTGAAGAGTGACCACCGACTGTCGGAATCGAAC
131 ACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGCCGATTGTGGGAATCGAAC
* ** * *
25864 CAACGACCACATGGTTAAAAGTTATGCGCTCTACCAGCTTAGCTAAGATGGCTTCGTTAAGTGGT
196 CCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCTTCGTTAAGTGGT
* *
25929 CTAACATAGTAAATATTGACACTACAAATATGTCCACGACGTTGGGATTCCATCTTTATTTAATG
261 CTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTTTATTTAATG
*
25994 GTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGACAAGTTTGGCAAAATCAGAGTTTCCCCC
326 GTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGAGTTTCCCCC
* * * *
26059 AAAAGCCCAAACAAAGTTGACAACCCTAAATGCCACGAACTTTT-ATTACTATGGAAAGTAAAAG
391 AAAAGCCCAAACGAAGTTGACGACCCTAAACGCCACGAACTTTTGA-TACTGTGGAAAGTAAAAG
*
26123 GTGTGCTCATTGCCCAATAATAATCAATAAATAAATCTAAGAATGAGCTTGAGTAAATGACACGC
455 GTGTGCTCATTGCCCAATAATATTC---AAATAAATCTAAGAATGAGCTTGAGTAAATGACACGC
* * *
26188 CAAGGGCCTTTTCGTCTTCAAAAATTCTGAACAATGAACAACAGGACAAAATC-GTAATCTAAAA
517 CAAGGGCCTTTTCATCTTCAAAAATTATGAACAATGAACAACAGGACAAAATCAG-AATCTCAAA
* * * *
26252 TATTATAGAAAATACCAATCTTCTCCTTAAACTGTTCATGATCCCCGCTTCTATAACTACAACCA
581 TATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAACTACACCCA
26317 AC
646 AC
*
26319 GATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCACACACAGGGATCCATT
1 GATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAGGGATCCATT
* *
26384 TTACCAAGGAAAACAGATGACATGCTACAAACATTTCAAAATATGTAGAATTATCCGATTGTGGA
66 TTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCGATTGTGGA
*
26449 ACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGCCGACTGTGGGAATCGAAC
131 ACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGCCGATTGTGGGAATCGAAC
* * *
26514 CCACGACCACATAGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAAACGGCTTCATTAAGTGGT
196 CCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCTTCGTTAAGTGGT
*
26579 CTAACATAGTGAATATTAGCACTACAAATATGTCCACGACGTTGGGATTCCATCTTTATTTAATG
261 CTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTTTATTTAATG
* * *
26644 GTTTCATGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAAAATTTCCCCC
326 GTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGAGTTTCCCCC
* * *
26709 GAAAGCCCAAACGAAGTTGACGACCCTAAACACCACGAACTTTTGTTACTGTGGAAAGTAAAAGG
391 AAAAGCCCAAACGAAGTTGACGACCCTAAACGCCACGAACTTTTGATACTGTGGAAAGTAAAAGG
** *
26774 TGTGCTCATTTTCCAATAATATTCAATAAATAAATTTAAGAATGAGCTTGAGTAAATGACACGCC
456 TGTGCTCATTGCCCAATAATATTC---AAATAAATCTAAGAATGAGCTTGAGTAAATGACACGCC
* * * *
26839 AACGGACTTTTCGA-CTTCAAAAATTCTGAA-AATGAACAACAAGACAAAATC-GAAATCTCAAA
518 AAGGGCCTTTTC-ATCTTCAAAAATTATGAACAATGAACAACAGGACAAAATCAG-AATCTCAAA
* *
26901 TATTATAGAAAATACTAATCTTATCATTAAACGGTTCCTGATCCCCGCTTCTATAACTACACCCA
581 TATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAACTACACCCA
*
26966 AT
646 AC
26968 GATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAGGGATCCATT
1 GATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAGGGATCCATT
27033 TTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCGATTGTGGA
66 TTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCGATTGTGGA
* * *
27098 ACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTAAAGAGTGACCGCAGACTGTGGGAATCGAAC
131 ACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGCCGATTGTGGGAATCGAAC
* *
27163 CCACAACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACTGCTTCGTTAAGTGGT
196 CCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCTTCGTTAAGTGGT
*
27228 CTAACATAGTAAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTTTATTTAATG
261 CTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTTTATTTAATG
* *
27293 GTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCAAAGTTTGGTAAAATCAGAGTTTCCCCC
326 GTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGAGTTTCCCCC
** *
27358 AAAAGCCCAAACGAAGTTGACGACCCTAAATACCACGAACTTTT-ATTATTGTGGAAAGTAAAAG
391 AAAAGCCCAAACGAAGTTGACGACCCTAAACGCCACGAACTTTTGA-TACTGTGGAAAGTAAAAG
27422 GTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAATGACACGC
455 GTGTGCTCATTGCCCAATAATATTC---AAATAAATCTAAGAATGAGCTTGAGTAAATGACACGC
* * * * * *
27487 CAAGGACCTTTTCGTCTTCAAAAATTCTGAACAATGAACAATAAGACAAAATC-GTAATCTAAAA
517 CAAGGGCCTTTTCATCTTCAAAAATTATGAACAATGAACAACAGGACAAAATCAG-AATCTCAAA
*
27551 TATTATAGAAAATACCAATCTTATCCTTAAACAGTTCCTGATCCCCGCTTCTATAACTACACCCA
581 TATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAACTACACCCA
27616 AC
646 AC
** *
27618 GATAAAGAAAAGACAACAGAATTAGTTAATGATTTAGGTAGTCGAGTCAAACACAGAGATCCATT
1 GATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAGGGATCCATT
*
27683 TTACCAAGGTAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCGATTGTGGA
66 TTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCGATTGTGGA
* *
27748 ACAATCAAGCAACGAGGAAATGGAAAAAGAGAGTAAAGAGTGACCGCCGATTGTGGGAATCGAAC
131 ACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGCCGATTGTGGGAATCGAAC
*
27813 CCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCTTTGTTAAGTGGT
196 CCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCTTCGTTAAGTGGT
*
27878 CTAACATAGTGAATATTAGCACTACAAATATGTCCACGACGTTGGGATTCCATCTTTATTTAATG
261 CTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTTTATTTAATG
* * *
27943 GTTTCTTGTTGAAATAGTTATTTTTCCAAACATGAACCAAGTTTGGCAAAATTAGAGTTTCCCCC
326 GTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGAGTTTCCCCC
* *
28008 AAAAGCCTAAACGAAGTTGACGACCCTAAACACCACGAACTTTT-ATTACTGTGGAAAGTAAAAG
391 AAAAGCCCAAACGAAGTTGACGACCCTAAACGCCACGAACTTTTGA-TACTGTGGAAAGTAAAAG
*
28072 GCGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAATGACACGC
455 GTGTGCTCATTGCCCAATAATATTC---AAATAAATCTAAGAATGAGCTTGAGTAAATGACACGC
* * * * * *
28137 CAACGGACTTTTCGAT-TTCATAAATTCTGAA-AATGAACAACAAGACAAAATCGGAATCTCAAA
517 CAAGGGCCTTTTC-ATCTTCAAAAATTATGAACAATGAACAACAGGACAAAATCAGAATCTCAAA
* *
28200 TATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTTTATAACTAAACCCA
581 TATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAACTACACCCA
28265 AC
646 AC
28267 GATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAGGGATCCATT
1 GATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAGGGATCCATT
* *
28332 TTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCATAATTATCCGATTATGGA
66 TTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCGATTGTGGA
* * * *
28397 ACAATCAAGCAACGAGGAAATGGCAAAAGATAGTGAAGAGTGACCACAGACTGTGGGAATCGAAC
131 ACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGCCGATTGTGGGAATCGAAC
*
28462 CCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCTTCGTTAAGTGAT
196 CCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCTTCGTTAAGTGGT
28527 CTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTTTATTTAATG
261 CTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTTTATTTAATG
* *
28592 GTTTCTTATTGAAATAGTTATTTTTCCAAACTTGAGCAAAGTTTGGCAAAATCAGAGTTTCCCCC
326 GTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGAGTTTCCCCC
** * *
28657 AAAAGCAAAAACGAAGTTGACGACCCTAAATGCCACGAACTTTT-ATTACTATGGAAAGTAAAAG
391 AAAAGCCCAAACGAAGTTGACGACCCTAAACGCCACGAACTTTTGA-TACTGTGGAAAGTAAAAG
* * *
28721 GTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTATGAATAAGCTTGAGTAAATAACACGC
455 GTGTGCTCATTGCCCAATAATATTC---AAATAAATCTAAGAATGAGCTTGAGTAAATGACACGC
* * * * *
28786 CAAGGGCCTTTTCGTCTTTAAAAATTCTGAACAATGAACAACAAGACAAAATC-GTAATCTAAAA
517 CAAGGGCCTTTTCATCTTCAAAAATTATGAACAATGAACAACAGGACAAAATCAG-AATCTCAAA
* *
28850 TATTATAGAAAATACCAATATTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAACTATACCCA
581 TATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAACTACACCCA
*
28915 AG
646 AC
28917 GATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAGGGATCC
1 GATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAGGGATCC
28979 TGTAACATCC
Statistics
Matches: 6350, Mismatches: 1107, Indels: 1082
0.74 0.13 0.13
Matches are distributed among these distances:
642 1 0.00
643 5 0.00
644 7 0.00
645 5 0.00
646 617 0.10
647 2 0.00
648 3 0.00
649 1829 0.29
650 2504 0.39
651 13 0.00
652 9 0.00
653 1 0.00
654 9 0.00
656 7 0.00
657 3 0.00
658 15 0.00
659 15 0.00
660 28 0.00
661 28 0.00
662 39 0.01
663 57 0.01
664 55 0.01
665 38 0.01
666 27 0.00
667 31 0.00
668 35 0.01
669 28 0.00
670 7 0.00
671 21 0.00
672 15 0.00
673 16 0.00
674 24 0.00
675 14 0.00
676 21 0.00
677 18 0.00
678 25 0.00
679 33 0.01
680 7 0.00
681 18 0.00
682 8 0.00
683 17 0.00
684 7 0.00
685 5 0.00
686 10 0.00
687 14 0.00
688 15 0.00
689 11 0.00
690 11 0.00
691 15 0.00
692 25 0.00
693 17 0.00
694 12 0.00
695 11 0.00
696 19 0.00
697 11 0.00
698 15 0.00
699 15 0.00
700 26 0.00
701 38 0.01
702 42 0.01
703 27 0.00
704 16 0.00
705 8 0.00
706 20 0.00
707 14 0.00
708 33 0.01
709 37 0.01
710 29 0.00
711 24 0.00
712 22 0.00
713 25 0.00
714 24 0.00
715 12 0.00
716 21 0.00
717 10 0.00
718 15 0.00
719 9 0.00
720 4 0.00
721 14 0.00
722 11 0.00
723 1 0.00
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.28
Consensus pattern (647 bp):
GATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAGGGATCCATT
TTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCGATTGTGGA
ACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGCCGATTGTGGGAATCGAAC
CCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCTTCGTTAAGTGGT
CTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTTTATTTAATG
GTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGAGTTTCCCCC
AAAAGCCCAAACGAAGTTGACGACCCTAAACGCCACGAACTTTTGATACTGTGGAAAGTAAAAGG
TGTGCTCATTGCCCAATAATATTCAAATAAATCTAAGAATGAGCTTGAGTAAATGACACGCCAAG
GGCCTTTTCATCTTCAAAAATTATGAACAATGAACAACAGGACAAAATCAGAATCTCAAATATTA
TAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAACTACACCCAAC
Found at i:24753 original size:15 final size:15
Alignment explanation
Indices: 24734--24783 Score: 73
Period size: 15 Copynumber: 3.3 Consensus size: 15
24724 CGAGGGTATT
*
24734 GTAGTCCTTCGGGAT
1 GTAGTCCTTCGGGAC
* *
24749 TTAGTCATTCGGGAC
1 GTAGTCCTTCGGGAC
24764 GTAGTCCTTCGGGAC
1 GTAGTCCTTCGGGAC
24779 GTAGT
1 GTAGT
24784 GGTCCTACGA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.16, C:0.20, G:0.32, T:0.32
Consensus pattern (15 bp):
GTAGTCCTTCGGGAC
Found at i:27192 original size:649 final size:650
Alignment explanation
Indices: 25456--28978 Score: 6048
Period size: 650 Copynumber: 5.4 Consensus size: 650
25446 GGGTGTTACA
*
25456 ACTGTGGAAAGTAAAAGGTGCGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGC
1 ACTGTGGAAAGTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGC
*
25521 TTGAGTAAATGACACGCCAACGGACTTTTCGTCTTCAAAAATTCTGAACAATGAACAACAGGACA
66 TTGAGTAAATGACACGCCAACGGACTTTTCGTCTTCAAAAATTCTGAACAATGAACAACAAGACA
* * * * *
25586 ATATCGAAATCTCAAATATTATAGAAAATACCAATATTATCCTTAAACGGTTCCTGATTCCCGCT
131 AAATCGTAATCTAAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCT
*
25651 TCTATAACTACACCCAGCGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGT
196 TCTATAACTACACCCAACGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGT
*
25716 CAAACACAGGTATCCATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCA
261 CAAACACAGGGATCCATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCA
* *
25781 GAATTATCCGATTGTGGAACAATCAAGCAACGAGGAAATGGAAAAAGAGAGTGAAGAGTGACCAC
326 GAATTATCCGATTGTGGAACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGC
* * ** *
25846 CGACTGTCGGAATCGAACCAACGACCACATGGTTAAAAGTTATGCGCTCTACCAGCTTAGCTAAG
391 CGACTGTGGGAATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAG
* *
25911 ATGGCTTCGTTAAGTGGTCTAACATAGTAAATATT-GACACTACAAATATGTCCACGACGTTGGG
456 ACGGCTTCGTTAAGTGGTCTAACATAGTGAATATTAG-CACTACAAATATGTCCACGACGTTGGG
*
25975 ATTCCATCTTTATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGACAAGTTTGG
520 ATTCCATCTTTATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGG
* * *
26040 CAAAATCAGAGTTTCCCCCAAAAGCCCAAACAAAGTTGACAACCCTAAATGCCACGAACTTTTAT
585 CAAAATCAGAGTTTCCCCCAAAAGCCCAAACGAAGTTGACGACCCTAAATACCACGAACTTTTAT
26105 T
650 T
* *
26106 ACTATGGAAAGTAAAAGGTGTGCTCATTGCCCAATAATAATCAATAAATAAATCTAAGAATGAGC
1 ACTGTGGAAAGTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGC
* * *
26171 TTGAGTAAATGACACGCCAAGGGCCTTTTCGTCTTCAAAAATTCTGAACAATGAACAACAGGACA
66 TTGAGTAAATGACACGCCAACGGACTTTTCGTCTTCAAAAATTCTGAACAATGAACAACAAGACA
* * *
26236 AAATCGTAATCTAAAATATTATAGAAAATACCAATCTTCTCCTTAAACTGTTCATGATCCCCGCT
131 AAATCGTAATCTAAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCT
*
26301 TCTATAACTACAACCAACGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGT
196 TCTATAACTACACCCAACGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGT
* * *
26366 CACACACAGGGATCCATTTTACCAAGGAAAACAGATGACATGCTACAAACATTTCAAAATATGTA
261 CAAACACAGGGATCCATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCA
26431 GAATTATCCGATTGTGGAACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGC
326 GAATTATCCGATTGTGGAACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGC
* *
26496 CGACTGTGGGAATCGAACCCACGACCACATAGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAA
391 CGACTGTGGGAATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAG
*
26561 ACGGCTTCATTAAGTGGTCTAACATAGTGAATATTAGCACTACAAATATGTCCACGACGTTGGGA
456 ACGGCTTCGTTAAGTGGTCTAACATAGTGAATATTAGCACTACAAATATGTCCACGACGTTGGGA
*
26626 TTCCATCTTTATTTAATGGTTTCATGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGC
521 TTCCATCTTTATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGC
* * * * *
26691 AAAATCAAAATTTCCCCCGAAAGCCCAAACGAAGTTGACGACCCTAAACACCACGAACTTTTGTT
586 AAAATCAGAGTTTCCCCCAAAAGCCCAAACGAAGTTGACGACCCTAAATACCACGAACTTTTATT
** *
26756 ACTGTGGAAAGTAAAAGGTGTGCTCATTTTCCAATAATATTCAATAAATAAATTTAAGAATGAGC
1 ACTGTGGAAAGTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGC
*
26821 TTGAGTAAATGACACGCCAACGGACTTTTCGACTTCAAAAATTCTGAA-AATGAACAACAAGACA
66 TTGAGTAAATGACACGCCAACGGACTTTTCGTCTTCAAAAATTCTGAACAATGAACAACAAGACA
* * * *
26885 AAATCGAAATCTCAAATATTATAGAAAATACTAATCTTATCATTAAACGGTTCCTGATCCCCGCT
131 AAATCGTAATCTAAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCT
*
26950 TCTATAACTACACCCAATGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGT
196 TCTATAACTACACCCAACGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGT
27015 CAAACACAGGGATCCATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCA
261 CAAACACAGGGATCCATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCA
*
27080 GAATTATCCGATTGTGGAACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTAAAGAGTGACCGC
326 GAATTATCCGATTGTGGAACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGC
* *
27145 AGACTGTGGGAATCGAACCCACAACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAG
391 CGACTGTGGGAATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAG
* * *
27210 ACTGCTTCGTTAAGTGGTCTAACATAGTAAATATTGGCACTACAAATATGTCCACGACGTTGGGA
456 ACGGCTTCGTTAAGTGGTCTAACATAGTGAATATTAGCACTACAAATATGTCCACGACGTTGGGA
* *
27275 TTCCATCTTTATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCAAAGTTTGGT
521 TTCCATCTTTATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGC
27340 AAAATCAGAGTTTCCCCCAAAAGCCCAAACGAAGTTGACGACCCTAAATACCACGAACTTTTATT
586 AAAATCAGAGTTTCCCCCAAAAGCCCAAACGAAGTTGACGACCCTAAATACCACGAACTTTTATT
*
27405 ATTGTGGAAAGTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGC
1 ACTGTGGAAAGTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGC
*
27470 TTGAGTAAATGACACGCCAA-GGACCTTTTCGTCTTCAAAAATTCTGAACAATGAACAATAAGAC
66 TTGAGTAAATGACACGCCAACGGA-CTTTTCGTCTTCAAAAATTCTGAACAATGAACAACAAGAC
*
27534 AAAATCGTAATCTAAAATATTATAGAAAATACCAATCTTATCCTTAAACAGTTCCTGATCCCCGC
130 AAAATCGTAATCTAAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGC
**
27599 TTCTATAACTACACCCAACGATAAAGAAAAGACAACAGAATTAGTTAATGATTTAGGTAGTCGAG
195 TTCTATAACTACACCCAACGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAG
* *
27664 TCAAACACAGAGATCCATTTTACCAAGGTAAACAGATGACATGCTACAAACATTTCAAAATATGC
260 TCAAACACAGGGATCCATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGC
* *
27729 AGAATTATCCGATTGTGGAACAATCAAGCAACGAGGAAATGGAAAAAGAGAGTAAAGAGTGACCG
325 AGAATTATCCGATTGTGGAACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCG
*
27794 CCGATTGTGGGAATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAA
390 CCGACTGTGGGAATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAA
*
27859 GACGGCTTTGTTAAGTGGTCTAACATAGTGAATATTAGCACTACAAATATGTCCACGACGTTGGG
455 GACGGCTTCGTTAAGTGGTCTAACATAGTGAATATTAGCACTACAAATATGTCCACGACGTTGGG
* *
27924 ATTCCATCTTTATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACATGAACCAAGTTTGG
520 ATTCCATCTTTATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGG
* * *
27989 CAAAATTAGAGTTTCCCCCAAAAGCCTAAACGAAGTTGACGACCCTAAACACCACGAACTTTTAT
585 CAAAATCAGAGTTTCCCCCAAAAGCCCAAACGAAGTTGACGACCCTAAATACCACGAACTTTTAT
28054 T
650 T
*
28055 ACTGTGGAAAGTAAAAGGCGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGC
1 ACTGTGGAAAGTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGC
*
28120 TTGAGTAAATGACACGCCAACGGACTTTTCGAT-TTCATAAATTCTGAA-AATGAACAACAAGAC
66 TTGAGTAAATGACACGCCAACGGACTTTTCG-TCTTCAAAAATTCTGAACAATGAACAACAAGAC
* *
28183 AAAATCGGAATCTCAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGC
130 AAAATCGTAATCTAAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGC
* *
28248 TTTTATAACTAAACCCAACGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAG
195 TTCTATAACTACACCCAACGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAG
28313 TCAAACACAGGGATCCATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGC
260 TCAAACACAGGGATCCATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGC
* * * *
28378 ATAATTATCCGATTATGGAACAATCAAGCAACGAGGAAATGGCAAAAGATAGTGAAGAGTGACCA
325 AGAATTATCCGATTGTGGAACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCG
*
28443 CAGACTGTGGGAATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAA
390 CCGACTGTGGGAATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAA
* *
28508 GACGGCTTCGTTAAGTGATCTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGG
455 GACGGCTTCGTTAAGTGGTCTAACATAGTGAATATTAGCACTACAAATATGTCCACGACGTTGGG
* *
28573 ATTCCATCTTTATTTAATGGTTTCTTATTGAAATAGTTATTTTTCCAAACTTGAGCAAAGTTTGG
520 ATTCCATCTTTATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGG
** *
28638 CAAAATCAGAGTTTCCCCCAAAAGCAAAAACGAAGTTGACGACCCTAAATGCCACGAACTTTTAT
585 CAAAATCAGAGTTTCCCCCAAAAGCCCAAACGAAGTTGACGACCCTAAATACCACGAACTTTTAT
28703 T
650 T
* * *
28704 ACTATGGAAAGTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTATGAATAAGC
1 ACTGTGGAAAGTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGC
* * * *
28769 TTGAGTAAATAACACGCCAAGGGCCTTTTCGTCTTTAAAAATTCTGAACAATGAACAACAAGACA
66 TTGAGTAAATGACACGCCAACGGACTTTTCGTCTTCAAAAATTCTGAACAATGAACAACAAGACA
*
28834 AAATCGTAATCTAAAATATTATAGAAAATACCAATATTATCCTTAAACGGTTCCTGATCCCCGCT
131 AAATCGTAATCTAAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCT
* *
28899 TCTATAACTATACCCAAGGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGT
196 TCTATAACTACACCCAACGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGT
28964 CAAACACAGGGATCC
261 CAAACACAGGGATCC
28979 TGTAACATCC
Statistics
Matches: 2708, Mismatches: 158, Indels: 14
0.94 0.05 0.00
Matches are distributed among these distances:
648 4 0.00
649 1218 0.45
650 1481 0.55
651 5 0.00
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.25
Consensus pattern (650 bp):
ACTGTGGAAAGTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGC
TTGAGTAAATGACACGCCAACGGACTTTTCGTCTTCAAAAATTCTGAACAATGAACAACAAGACA
AAATCGTAATCTAAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCT
TCTATAACTACACCCAACGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGT
CAAACACAGGGATCCATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCA
GAATTATCCGATTGTGGAACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGC
CGACTGTGGGAATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAG
ACGGCTTCGTTAAGTGGTCTAACATAGTGAATATTAGCACTACAAATATGTCCACGACGTTGGGA
TTCCATCTTTATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGC
AAAATCAGAGTTTCCCCCAAAAGCCCAAACGAAGTTGACGACCCTAAATACCACGAACTTTTATT
Found at i:29409 original size:2 final size:2
Alignment explanation
Indices: 29402--29475 Score: 130
Period size: 2 Copynumber: 36.5 Consensus size: 2
29392 GATATAACAT
29402 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
29444 TA TA TA TA TA TA TA TA TA TA GTA TA TA CA TA T
1 TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA T
29476 CACACATTAT
Statistics
Matches: 69, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
2 67 0.97
3 2 0.03
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (2 bp):
TA
Found at i:30041 original size:45 final size:45
Alignment explanation
Indices: 29970--30076 Score: 128
Period size: 45 Copynumber: 2.4 Consensus size: 45
29960 ATGCACTACT
* * *
29970 GATGCATCGGTGCA-TAAAATGTATTCGATGTTGT-ATTATTACTAG
1 GATGCATCGATGCACT-AAATGCATTCGATGTT-TCATTATTAATAG
* * *
30015 GATGCATCGATGCACTAATTGCATTCGATGTTTCCTTATTAATGG
1 GATGCATCGATGCACTAAATGCATTCGATGTTTCATTATTAATAG
30060 GATGCATCGATGCACTA
1 GATGCATCGATGCACTA
30077 CTTATGCATC
Statistics
Matches: 54, Mismatches: 6, Indels: 4
0.84 0.09 0.06
Matches are distributed among these distances:
44 1 0.02
45 52 0.96
46 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.21, T:0.36
Consensus pattern (45 bp):
GATGCATCGATGCACTAAATGCATTCGATGTTTCATTATTAATAG
Found at i:30084 original size:64 final size:64
Alignment explanation
Indices: 30016--30153 Score: 172
Period size: 64 Copynumber: 2.2 Consensus size: 64
30006 TATTACTAGG
* * * * *
30016 ATGCATCGATGCACTAATTGCATTCGATGT-TTCCTTATT-AATGGGATGCATCGATGCACTACT
1 ATGCATCGATGCACGAATTGCATTCGATGTATTCATT-TTAAAAGAG-TGCATCGATGCACTACC
*
30079 T
64 A
* *
30080 ATGCATCGATGCACGAATTGTATTCGATGTATTTATTTTAAAAGAGTGCATCGATGCACTACCA
1 ATGCATCGATGCACGAATTGCATTCGATGTATTCATTTTAAAAGAGTGCATCGATGCACTACCA
30144 ATGCATCGAT
1 ATGCATCGAT
30154 ACACCTTCAA
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
64 56 0.88
65 8 0.12
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (64 bp):
ATGCATCGATGCACGAATTGCATTCGATGTATTCATTTTAAAAGAGTGCATCGATGCACTACCA
Found at i:32988 original size:45 final size:45
Alignment explanation
Indices: 32917--33023 Score: 137
Period size: 45 Copynumber: 2.4 Consensus size: 45
32907 ATGCACTACT
* * *
32917 GATGCATCGGTGCA-TAAAATGTATTCGATGTTGT-ATTATTACTGG
1 GATGCATCGATGCACT-AAATGCATTCGATGTT-TCATTATTAATGG
* *
32962 GATGCATCGATGCACTAATTGCATTCGATGTTTCCTTATTAATGG
1 GATGCATCGATGCACTAAATGCATTCGATGTTTCATTATTAATGG
33007 GATGCATCGATGCACTA
1 GATGCATCGATGCACTA
33024 CTTATGCATC
Statistics
Matches: 55, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
44 1 0.02
45 53 0.96
46 1 0.02
ACGTcount: A:0.26, C:0.16, G:0.22, T:0.36
Consensus pattern (45 bp):
GATGCATCGATGCACTAAATGCATTCGATGTTTCATTATTAATGG
Found at i:33031 original size:64 final size:64
Alignment explanation
Indices: 32963--33100 Score: 181
Period size: 64 Copynumber: 2.2 Consensus size: 64
32953 TATTACTGGG
* * * * *
32963 ATGCATCGATGCACTAATTGCATTCGATGT-TTCCTTATT-AATGGGATGCATCGATGCACTACT
1 ATGCATCGATGCACGAATTGCATTCGATGTATTCATT-TTAAAAGAG-TGCATCGATGCACTACC
*
33026 T
64 A
*
33027 ATGCATCGATGCACGAATTGCATTCGATGTATTTATTTTAAAAGAGTGCATCGATGCACTACCA
1 ATGCATCGATGCACGAATTGCATTCGATGTATTCATTTTAAAAGAGTGCATCGATGCACTACCA
33091 ATGCATCGAT
1 ATGCATCGAT
33101 ACACCTTCAA
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
64 57 0.88
65 8 0.12
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (64 bp):
ATGCATCGATGCACGAATTGCATTCGATGTATTCATTTTAAAAGAGTGCATCGATGCACTACCA
Found at i:50956 original size:651 final size:650
Alignment explanation
Indices: 33872--60438 Score: 43416
Period size: 650 Copynumber: 40.9 Consensus size: 650
33862 GGATGTTACA
*
33872 GATCCATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATACAGAATTATCCG
1 GATCCATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCG
* * *
33937 ATTGTGGAACAATCAAGCAACGATGAAATGGAAAAAGAGAGTGAAGAGTGACTGCCGACTGTGGG
66 ATTGTGGAACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGCCGACTGTGGG
* *
34002 AATCGATCCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGATTCGT
131 AATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCTTCGT
34067 TAAGTGGTCTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTTT
196 TAAGTGGTCTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTTT
34132 ATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGAG
261 ATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGAG
* * * *
34197 TTTCCACCAAAAGCCCAAACGAAGTTGACTACCCTAAACACCACGAACTTTTGTTACTGTGGAAA
326 TTTCCCCCAAAAGCCCAAACGAAGTTGACGACCCTAAACGCCACGAACTTTTATTACTGTGGAAA
* *
34262 GTAAAAGGTGTGCTCATTACCCAATAATATTCAATAAATAAATCTAAGAATGAACTTGAGTAAAT
391 GTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAAT
*
34327 GACACGCCAAGGGCCTTTTCATCTTCAAAAATTCTGAACAATGAACAACAAGACAAAATCGGAAT
456 GACACGCCAAGGGCCTTTTCGTCTTCAAAAATTCTGAACAATGAACAACAAGACAAAATCGGAAT
**
34392 CTAAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCATTTCTATAACTA
521 CTAAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAACTA
* * *
34457 CA-CCAACCGATAAAGAAAAGATAACAGAAGAAGTTAATGATTTAGGTAGTCGTGTCAAACGCAG
586 CACCCAA-CGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAG
34521 G
650 G
* * *
34522 GATCCATTTTACCAAGGAAAACAGATGACATGCAATAAACATTTCAAAATATGCAGAATTATCCG
1 GATCCATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCG
* * *
34587 ATTGTGGAACAATCAAGCAAAGAGGAAATGGCAAATGAAAGTGAAGAGTGACCGCCGACTGTGGG
66 ATTGTGGAACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGCCGACTGTGGG
* * * *
34652 AATCGAACCCACGACCACATGGTTAAAAGGCAAGCGCTCTACCAGCTAAGCGAAGACGGCTTCGT
131 AATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCTTCGT
* * *
34717 TAAGTGGTCTAACATATTGAATATTAGCACTACAAATATGTCCACGACATTGGGATTCCATCTTT
196 TAAGTGGTCTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTTT
*
34782 ATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCAAAGTTTGGCAAAATCAGAG
261 ATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGAG
*
34847 TTTCCCCCAAAAGCTCAAACGAAGTTGACGACCCTAAACGCCACGAACTTTTATTACTGTGGAAA
326 TTTCCCCCAAAAGCCCAAACGAAGTTGACGACCCTAAACGCCACGAACTTTTATTACTGTGGAAA
* *
34912 GTAAAAGGTGTGCTCATTTCCCAATAATATTCAATAAATAAATCTAATAATGAGCTTGAGTAAAT
391 GTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAAT
* * * *
34977 GACAGGCCAAGGGCCATTTCATCTTCAAAAATTCTGAACAATGAACAACAAGACAAAATTGGAAT
456 GACACGCCAAGGGCCTTTTCGTCTTCAAAAATTCTGAACAATGAACAACAAGACAAAATCGGAAT
35042 CTAAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAACTA
521 CTAAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAACTA
* * * *
35107 CACCCAACGATAAAGAAAAGACAATATAAGAAGTTAATGATTTAGGTAGTCGCGTCAAACACATG
586 CACCCAACGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAGG
*
35172 GATCTATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCG
1 GATCCATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCG
* * * * *
35237 ATTATAGAACAATCAAGCAACGAGGAAATGGAAAAAGAGAGTGAAGAGTGCCCACCGACTGTGGG
66 ATTGTGGAACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGCCGACTGTGGG
*
35302 AATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCT-AGACGACTTCGT
131 AATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCTTCGT
35366 TAAGTGGTCTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTTT
196 TAAGTGGTCTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTTT
*
35431 ATTTAATGGTTTCTTGTTGAAATAGATATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGAG
261 ATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGAG
** * *
35496 TTTCCCCCAAAAGCCCAATGGATGTTGACGACCCTAAACACCACGAACTTTTATTACTGTGGAAA
326 TTTCCCCCAAAAGCCCAAACGAAGTTGACGACCCTAAACGCCACGAACTTTTATTACTGTGGAAA
* *
35561 GTAAAAGGTGTGCTCAATACCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAAT
391 GTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAAT
* * *
35626 GACACGCCAAGGGCCTTTTCGTCTTCAAAAATTCTGAACAATAAACAACAAGACAAAATAGAAAT
456 GACACGCCAAGGGCCTTTTCGTCTTCAAAAATTCTGAACAATGAACAACAAGACAAAATCGGAAT
* **
35691 CTAAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCATGATCCCCATTTCTATAACTA
521 CTAAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAACTA
* * *
35756 CACCCAACGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGAAGTCGTGTCAAACAAAGG
586 CACCCAACGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAGG
*
35821 GATCCATTTTACCAAGGCAAACAGATGACATGCTATAAACATTTCAAAATATGCAGAATTATCCG
1 GATCCATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCG
* * * *
35886 ATTTTGGAACAATCAAGCAAAGAGGAAATGGCAAATGAAAGTGAAGAGTGACCGCCGACTGTGGG
66 ATTGTGGAACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGCCGACTGTGGG
* *
35951 AATCGAACCCACGACCACATGGTTAAAAGGCATGCGCTCTACCAGCTGAGCGAAGACGGCTTCGT
131 AATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCTTCGT
* *
36016 TAAGTGGTCTGACATAGTGAATATTAGCACTACAAATATGTCCACGACGTTGGGATTCCATCTTT
196 TAAGTGGTCTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTTT
*
36081 ATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCAAAGTTTGGCAAAATCAGAG
261 ATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGAG
* * *
36146 TTTCCCCCAAAAGCTCAAACAAAGTTAACGACCCTAAACGCCACGAACTTTTATTACTGTGGAAA
326 TTTCCCCCAAAAGCCCAAACGAAGTTGACGACCCTAAACGCCACGAACTTTTATTACTGTGGAAA
* *
36211 GTAAAAGGTGTGCTCATTTCCCAATAATATTCAATAAATAAATCTAATAATGAGCTTGAGTAAAT
391 GTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAAT
* * * * * *
36276 GACACGCCAAGAGCCATTTCATCTTAAAAAATTTTGAACAATGAACAACAAGACAAAATTGGAAT
456 GACACGCCAAGGGCCTTTTCGTCTTCAAAAATTCTGAACAATGAACAACAAGACAAAATCGGAAT
36341 CTAAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAACTA
521 CTAAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAACTA
* * *
36406 CACCCGACAATAAAGAAAAGACAATAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAGG
586 CACCCAACGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAGG
** * *
36471 GATTAATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCCGAATTATCTG
1 GATCCATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCG
*** * *
36536 ATTACAGAACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGCCCGTCGACTGTGGG
66 ATTGTGGAACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGCCGACTGTGGG
* *
36601 AATCGAACCCACGACCACATGGTTAAAAGTCATGCGCTCTACCAGCTGAGCT-AGACGGCTTTGT
131 AATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCTTCGT
* *
36665 TAAGTGGTCTAACATAGTGCATATTGGCACTACAAATATGTCAACGACGTTGGGATTCCATCTTT
196 TAAGTGGTCTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTTT
36730 ATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGAG
261 ATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGAG
* * * *
36795 TTTCCCCCAAAAGCCCAAACGATGTTGACGACCCTAAACACCACGAACTTTTGTTACTGCGGAAA
326 TTTCCCCCAAAAGCCCAAACGAAGTTGACGACCCTAAACGCCACGAACTTTTATTACTGTGGAAA
* *
36860 GTAAAAGGTGTGCTTATTACCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAAT
391 GTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAAT
* * *
36925 GACACGCCAAGGGCCTTTTCGTCTTCAAAAATTCTGAACAATAAACAAGAAGACAAAATAGGAAT
456 GACACGCCAAGGGCCTTTTCGTCTTCAAAAATTCTGAACAATGAACAACAAGACAAAATCGGAAT
* *
36990 CTAAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATACCCGTTTCTATAACTA
521 CTAAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAACTA
* * *
37055 CACCCAATGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGAAGTCGTGTCAAACACAGG
586 CACCCAACGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAGG
*
37120 GATCCATTTTACCAAGGCAAACAGATGACATGCTATAAACATTTCAAAATATGCAGAATTATCCG
1 GATCCATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCG
* * *
37185 ATTGTGGAATAATCAAGCAAAGAGGAAATGGCAAAATG-GAGTGAAGAGTGACTGCCGACTGTGG
66 ATTGTGGAACAATCAAGCAACGAGGAAATGGCAAAA-GAGAGTGAAGAGTGACCGCCGACTGTGG
37249 GAATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCTTCG
130 GAATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCTTCG
*
37314 TTAAGTGGTCTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCGT
195 TTAAGTGGTCTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTT
*
37379 TATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCATA
260 TATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGA
* *
37444 GTTTCCCCCAAAAGCCCAAACGATA-TTGACGACCCTAAACGCCACGAACTTTTGTTACTATGGA
325 GTTTCCCCCAAAAGCCCAAACGA-AGTTGACGACCCTAAACGCCACGAACTTTTATTACTGTGGA
*
37508 AAGTAAAAGGTGTGCTCATTCCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAA
389 AAGTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAA
* * **
37573 ATGACACGCCAAGGGCCTTTTCGTCTTCAAAAATTCTGAACAATGAACAACATGAAAAAATAAGA
454 ATGACACGCCAAGGGCCTTTTCGTCTTCAAAAATTCTGAACAATGAACAACAAGACAAAATCGGA
* * *
37638 ATCTAAAATATTATTGAAAATACTAATTTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAAC
519 ATCTAAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAAC
*
37703 TACACCCAACGATAAAGAAAAGTCAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACA
584 TACACCCAACGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACA
37768 GG
649 GG
* *
37770 GTTCCATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGTAGAATTATCCG
1 GATCCATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCG
* *
37835 ATTGTGTAACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTAAAGAGTGACCGCCGACTGTGGG
66 ATTGTGGAACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGCCGACTGTGGG
* * * *
37900 AATCGAACACTCGACCGCATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTATGACGGCTTCGT
131 AATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCTTCGT
* * * *
37965 TAAGTGGTCTAACTTAGTGAATATTGGCACTACCAATATGTCAACGACGTTGGAATTCCATCTTT
196 TAAGTGGTCTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTTT
* *
38030 CTTTAATGGTTTCTTGTTGAAATAATTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGAG
261 ATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGAG
* ** ** *
38095 TTTTCCCCAAAAGCCCAAATAAAGTTGACGACCCTAAACGCCACGAACTTTGGTTTCTGTGGAAA
326 TTTCCCCCAAAAGCCCAAACGAAGTTGACGACCCTAAACGCCACGAACTTTTATTACTGTGGAAA
38160 GTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAAT
391 GTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAAT
* * * * * *
38225 GACATGACAAGGGCCTTTTCGACTTTAAAAATTCTGAACAAAGAACAACAGGACAAAATCGGAAT
456 GACACGCCAAGGGCCTTTTCGTCTTCAAAAATTCTGAACAATGAACAACAAGACAAAATCGGAAT
* * *
38290 TTCAAATATTATAGAAAATACCAATCTTATCCTTAAACAGTTCCTGATCCCCGCTTCTATAACTA
521 CTAAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAACTA
* * * *
38355 CACCCAACGATAAAGAAAAGACAATAGAACAAATTAAAGATTTAGGTAGTCGAGTCAAACACAGG
586 CACCCAACGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAGG
* *
38420 GATCCATTTTACTAAGGCAAACAGATGACATGCTACAAATATTTCAAAATATGCAGAATTATCCG
1 GATCCATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCG
* * * * *
38485 ATTTTGGAACAATCAAGTAACGAGGAATTTGCAAAAGAGAGTGAAGAGTGATCGCCGACTGTGGG
66 ATTGTGGAACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGCCGACTGTGGG
* * * *
38550 AATCGAACCCGCGACCACATGGTTAAAAGCCATGTGCTCTACCAGTTGATCTAAGACGGCTTCGT
131 AATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCTTCGT
* *
38615 TAAATGGTCTAACATAGTGAATATTGTCACTACAAATATGTCCACGACGTTGGGATTCCATCTTT
196 TAAGTGGTCTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTTT
*
38680 ATTTAATAGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGAG
261 ATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGAG
* * *
38745 TTTCCCCCAAAAGCCCAAACGAAGTTGACGACCCTAAACACCACGAACTTTTGTTACTGCGGAAA
326 TTTCCCCCAAAAGCCCAAACGAAGTTGACGACCCTAAACGCCACGAACTTTTATTACTGTGGAAA
*
38810 GTAAAAGGTGTGCTCATTACCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAAT
391 GTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAAT
* *
38875 GACACGCCAAGGGCCTTTTCGTCTTCAAAAATTCTGAACAATGAACAACAAGACAAAATAGTAAT
456 GACACGCCAAGGGCCTTTTCGTCTTCAAAAATTCTGAACAATGAACAACAAGACAAAATCGGAAT
* * * *
38940 CTAAAATAATATAGAAAATACTAATCTTATCCTTAAACGGTTCTTGATCCCCGTTTCTATAACTA
521 CTAAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAACTA
* *
39005 CACCCAACGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGTGTCAAACAGAGG
586 CACCCAACGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAGG
* * * *
39070 GATCCATTTTTCCAAGGCAAACAGATGATATGCTATAAATATTTCAAAATATGCAGAATTATCCG
1 GATCCATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCG
* * *
39135 ATTGTGGAATAATCAAGCAAAGAGGAAATGGCAAAAGAGAGTGAATAGTGACCGCCGACTGTGGG
66 ATTGTGGAACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGCCGACTGTGGG
*
39200 AATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGATGGCTTCGT
131 AATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCTTCGT
39265 TAAGTGGTCTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTTT
196 TAAGTGGTCTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTTT
* * *
39330 ATTTAATGGTTTCTTGTTAAAATAGTTATTTTT-CAGAACATGAGCCAAGTTTGGCAAAATCGGA
261 ATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCA-AACTTGAGCCAAGTTTGGCAAAATCAGA
* * * * * *
39394 GTTTCCCCCCAAAGCCCAAACGATGTTGATGACCCTAAATGACACAAACTTTTATTACTGTGGAA
325 GTTTCCCCCAAAAGCCCAAACGAAGTTGACGACCCTAAACGCCACGAACTTTTATTACTGTGGAA
39459 AGTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAA
390 AGTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAA
* ** * * * *
39524 TGACATGCCAACAGACTTTTTGACTTCAAAAATTCTGAA-AATGAACAACAAGACAAAATTGGAA
455 TGACACGCCAAGGGCCTTTTCGTCTTCAAAAATTCTGAACAATGAACAACAAGACAAAATCGGAA
* *
39588 TCTAAAATATTATAGAAAATACCAATTTTATCCTTAAACGGTTCCTGATCCCTGCTTCTATAACT
520 TCTAAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAACT
*
39653 ACGCCCAACGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAG
585 ACACCCAACGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAG
39718 G
650 G
* * *
39719 GATCCATTTTACCAAGTCAAACAGATGACATGCTACAAACATTTCAAACTATGCAGAATTATCCA
1 GATCCATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCG
39784 ATTGTGGAACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGCCGACTGTGGG
66 ATTGTGGAACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGCCGACTGTGGG
39849 AATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTATA-ACGGCTTCG
131 AATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTA-AGACGGCTTCG
* * * *
39913 TTAAGTGGTCTAACTTAGTGAATATTAGCACAACAAATATGTCCACGACGTTGGAATTCCATCTT
195 TTAAGTGGTCTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTT
*
39978 TATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATAAGA
260 TATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGA
* * * *
40043 GTTTTCCCCAAAAGCCCAAACGAAGTTGAAGACCCTAAACGCCACGAAC-TTTAGTTTCTATGGA
325 GTTTCCCCCAAAAGCCCAAACGAAGTTGACGACCCTAAACGCCACGAACTTTTA-TTACTGTGGA
40107 AAGTAAAAGGTGTGCTCATT-CCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAA
389 AAGTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAA
* * * * **
40171 ATGACACGCCAAGGGCATTTTCGTCTTCAAAAATTCTGAACGATGAACAACAGGAAAAAATTAGA
454 ATGACACGCCAAGGGCCTTTTCGTCTTCAAAAATTCTGAACAATGAACAACAAGACAAAATCGGA
* *
40236 ATCTAAAATATTATAGAAAATACCAATTTTATCCTTAAACAGTTCCTGATCCCCGCTTCTATAAC
519 ATCTAAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAAC
*
40301 TACACCCAACGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCTAACACA
584 TACACCCAACGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACA
40366 GG
649 GG
*
40368 GATCCATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATACAGAATTATCCG
1 GATCCATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCG
* * *
40433 ATTGTGGAACAATCAAGCAACGAGGAAATGGAAAAAGAAAGTGAAGAGTAACCGCCGACTGTGGG
66 ATTGTGGAACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGCCGACTGTGGG
40498 AATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCTTCGT
131 AATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCTTCGT
40563 TAAGTGGTCTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTTT
196 TAAGTGGTCTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTTT
* *
40628 ATTTAATGGTTTCTTGTTAAAATAGTTATTTTT-CAGAACATGAGCCAAGTTTGGCAAAATCAGA
261 ATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCA-AACTTGAGCCAAGTTTGGCAAAATCAGA
* * * * *
40692 GTTTCCCCCCAAAGCCCAAACGATGTTGATGACCCTAAATGCCACAAACTTTTATTACTGTGGAA
325 GTTTCCCCCAAAAGCCCAAACGAAGTTGACGACCCTAAACGCCACGAACTTTTATTACTGTGGAA
40757 AGTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAA
390 AGTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAA
** * * * *
40822 TGACACGCCAACAGACTTTTTGACTTCAAAAATTCTGAA-AATGAACAACAAGACAAAATTGGAA
455 TGACACGCCAAGGGCCTTTTCGTCTTCAAAAATTCTGAACAATGAACAACAAGACAAAATCGGAA
* *
40886 TCTAAAATATTATAGAAAATACCAATTTTATCCTTAAACGGTTCCTGATCCCTGCTTCTATAACT
520 TCTAAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAACT
* *
40951 ACGCCCAATGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAG
585 ACACCCAACGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAG
41016 G
650 G
* * *
41017 GATCCATTTTATCAAGTCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCA
1 GATCCATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCG
*
41082 ATTGTGGAACAATCAAGCAACGAGGAAATGGCAAAAGAGAGAGAAGAGTGACCGCCGACTGTGGG
66 ATTGTGGAACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGCCGACTGTGGG
*
41147 AATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGTTGAGCTATA-ACGGCTTCG
131 AATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTA-AGACGGCTTCG
* * * * *
41211 TTAAGTGGTCTAACTTAGTGAATATTAGCACAACAAATATGTCCACGACGTTGGAATTTCATCTT
195 TTAAGTGGTCTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTT
*
41276 TATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATAAGA
260 TATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGA
* * * ** * *
41341 GTTTTCCCCAAAAGCCCAAACGAAGTTGAAGACCCTAAACGCCACAAACTTTGGTTTCTATGGAA
325 GTTTCCCCCAAAAGCCCAAACGAAGTTGACGACCCTAAACGCCACGAACTTTTATTACTGTGGAA
41406 AGTAAAAGGTGTGCTCATT-CCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAA
390 AGTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAA
* * * * **
41470 TGACACGCCAAGGGCATTTTCGTCTTCAAAAATTCTGAACGATGAACAACAGGAAAAAATTAGAA
455 TGACACGCCAAGGGCCTTTTCGTCTTCAAAAATTCTGAACAATGAACAACAAGACAAAATCGGAA
* *
41535 TCTAAAATATTATATAAAATACCAATTTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAACT
520 TCTAAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAACT
*
41600 ACACCCAACGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAT
585 ACACCCAACGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAG
41665 G
650 G
* *
41666 GATCCATTTTACCAAGGCAAACAGATGACATGCTACAAATATTTCAAAATATACAGAATTATCCG
1 GATCCATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCG
* * *
41731 ATTGTGGAACAATTAAGCAACGAGGAAATGGAAAAAGATAGTGAAGAGTGACCGCCGACTGTGGG
66 ATTGTGGAACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGCCGACTGTGGG
* * * * *
41796 AATCGAACCCACAACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGTTATGACAGCTTCAT
131 AATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCTTCGT
* * * *
41861 TAAGTGGTCTAACTTAGTGAATATTAGCACTACAAATATGTCCACGACGTTGGAATTCCACCTTT
196 TAAGTGGTCTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTTT
* *
41926 ATTTAATGGTTTCTTGTTAAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATAAGAG
261 ATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGAG
* * ** * * *
41991 TTTTCCCCAAAAGCCCAAACGAAGTTGAAGACCCTAAACGCCACGAACTTTGGTTTCTATTGAAA
326 TTTCCCCCAAAAGCCCAAACGAAGTTGACGACCCTAAACGCCACGAACTTTTATTACTGTGGAAA
42056 GTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAAT
391 GTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAAT
* *
42121 GACACGCCAAGGGCCTTTTCGTCTTTAAAAATTCTGAACAATGAACAACAGGACAAAATCGGAAT
456 GACACGCCAAGGGCCTTTTCGTCTTCAAAAATTCTGAACAATGAACAACAAGACAAAATCGGAAT
* * *
42186 TTCAAATATTATAGAAAATGCCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAACTA
521 CTAAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAACTA
* *
42251 CACCCAACGATAAAGAAAAGACAATAGAAGAAATTAATGATTTAGGTAGTCGAGTCAAACACAGG
586 CACCCAACGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAGG
** * * ** *
42316 GATTTATTTTACCAAGGAAAACAGATGACATGCTACAAATATTTCAAAATATAAAAAATTATCCG
1 GATCCATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCG
* * *
42381 ATTGTGGAACAATCAAGTAACGAGGAAATGGCAAAAGAAAGTGAAGAGTGATCGCCGACTGTGGG
66 ATTGTGGAACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGCCGACTGTGGG
*
42446 AATCGAACCCACGACCACATAGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCTTCGT
131 AATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCTTCGT
42511 TAAGTGGTCTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTTT
196 TAAGTGGTCTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTTT
* *
42576 ATTTAATGGTTTCTTGTTAAAATAGTTATTTTT-CAGAACATGAGCCAAGTTTGGCAAAATCAGA
261 ATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCA-AACTTGAGCCAAGTTTGGCAAAATCAGA
* * * * *
42640 GTTTCCCCCCAAAGCCCAAACGATGTTGATGACCCTAAATGCCACAAACTTTTATTACTGTGGAA
325 GTTTCCCCCAAAAGCCCAAACGAAGTTGACGACCCTAAACGCCACGAACTTTTATTACTGTGGAA
42705 AGTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAA
390 AGTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAA
** * * * *
42770 TGACACGCCAACAGACTTTTTGACTTCAAAAATTCTGAA-AATGAACAACAAGACAAAATTGGAA
455 TGACACGCCAAGGGCCTTTTCGTCTTCAAAAATTCTGAACAATGAACAACAAGACAAAATCGGAA
* *
42834 TCTAAAATATTATAGAAAATACCAATTTTATCCTTAAACGGTTCCTGATCCCTGCTTCTATAACT
520 TCTAAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAACT
* *
42899 ACGCCCAATGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAG
585 ACACCCAACGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAG
42964 G
650 G
* * *
42965 GATCCATTTTATCAAGTCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCA
1 GATCCATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCG
*
43030 ATTGTGGAACAATCAAGCAACGAGGAAATGGCAAAAGAGAGAGAAGAGTGACCGCCGACTGTGGG
66 ATTGTGGAACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGCCGACTGTGGG
*
43095 AATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGTTGAGCTATA-ACGGCTTCG
131 AATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTA-AGACGGCTTCG
* * * * *
43159 TTAAGTGGTCTAACTTAGTGAATATTAGCACAACAAATATGTCCACGACGTTGGAATTTCATCTT
195 TTAAGTGGTCTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTT
*
43224 TATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATAAGA
260 TATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGA
* * * ** * *
43289 GTTTTCCCCAAAAGCCCAAACGAAGTTGAAGACCCTAAACGCCACAAACTTTGGTTTCTATGGAA
325 GTTTCCCCCAAAAGCCCAAACGAAGTTGACGACCCTAAACGCCACGAACTTTTATTACTGTGGAA
43354 AGTAAAAGGTGTGCTCATT-CCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAA
390 AGTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAA
* * * * **
43418 TGACACGCCAAGGGCATTTTCGTCTTCAAAAATTCTGAACGATGAACAACAGGAAAAAATTAGAA
455 TGACACGCCAAGGGCCTTTTCGTCTTCAAAAATTCTGAACAATGAACAACAAGACAAAATCGGAA
* *
43483 TCTAAAATATTATATAAAATACCAATTTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAACT
520 TCTAAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAACT
*
43548 ACACCCAACGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAT
585 ACACCCAACGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAG
43613 G
650 G
* *
43614 GATCCATTTTACCAAGGCAAACAGATGACATGCTACAAATATTTCAAAATATACAGAATTATCCG
1 GATCCATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCG
* * *
43679 ATTGTGGAACAATTAAGCAACGAGGAAATGGAAAAAGATAGTGAAGAGTGACCGCCGACTGTGGG
66 ATTGTGGAACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGCCGACTGTGGG
* * * * *
43744 AATCGAACCCACAACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGTTATGACAGCTTCAT
131 AATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCTTCGT
* * * *
43809 TAAGTGGTCTAACTTAGTGAATATTAGCACTACAAATATGTCCACGACGTTGGAATTCCACCTTT
196 TAAGTGGTCTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTTT
* *
43874 ATTTAATGGTTTCTTGTTAAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATAAGAG
261 ATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGAG
* * ** * * *
43939 TTTTCCCCAAAAGCCCAAACGAAGTTGAAGACCCTAAACGCCACGAACTTTGGTTTCTATTGAAA
326 TTTCCCCCAAAAGCCCAAACGAAGTTGACGACCCTAAACGCCACGAACTTTTATTACTGTGGAAA
44004 GTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAAT
391 GTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAAT
* *
44069 GACACGCCAAGGGCCTTTTCGTCTTTAAAAATTCTGAACAATGAACAACAGGACAAAATCGGAAT
456 GACACGCCAAGGGCCTTTTCGTCTTCAAAAATTCTGAACAATGAACAACAAGACAAAATCGGAAT
* * *
44134 TTCAAATATTATAGAAAATGCCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAACTA
521 CTAAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAACTA
* *
44199 CACCCAACGATAAAGAAAAGACAATAGAAGAAATTAATGATTTAGGTAGTCGAGTCAAACACAGG
586 CACCCAACGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAGG
** * * ** *
44264 GATTTATTTTACCAAGGAAAACAGATGACATGCTACAAATATTTCAAAATATAAAAAATTATCCG
1 GATCCATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCG
* * *
44329 ATTGTGGAACAATCAAGTAACGAGGAAATGGCAAAAGAAAGTGAAGAGTGATCGCCGACTGTGGG
66 ATTGTGGAACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGCCGACTGTGGG
* * * *
44394 AATCGAACCCACGACCACATAGTTAAAAGCTATGTGCTCTACCAGCTGATCTAAGACGGCTTCGT
131 AATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCTTCGT
* * *
44459 TAAATGGTCTAACATAGTGAATATTGTCACTACAAATATGT-CATGGACGTTGGGATTCCATCTT
196 TAAGTGGTCTAACATAGTGAATATTGGCACTACAAATATGTCCA-CGACGTTGGGATTCCATCTT
* * *
44523 TATTAAATGGTTTCTTGTTGAAATAGTTATTTATCCAAACTTGAGCCAAGTTTGGCATAATCAGA
260 TATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGA
* * **
44588 GTTTCCCTCAAAAGCCCAAACGAAGTTGACGACCCTAAATGCCATAAACTTTTATTACTGTGGAA
325 GTTTCCCCCAAAAGCCCAAACGAAGTTGACGACCCTAAACGCCACGAACTTTTATTACTGTGGAA
44653 AGTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAA
390 AGTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAA
* * *
44718 TGACACGCCAAGGGCCTTTTCATCTTCAAAAA-T-T-----ATGAACAACATGACAAAATCGAAA
455 TGACACGCCAAGGGCCTTTTCGTCTTCAAAAATTCTGAACAATGAACAACAAGACAAAATCGGAA
* *
44776 TCTCAAATACTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAACT
520 TCTAAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAACT
*
44841 ACACCCAACGATAAAGAAAAGACAACAGAAGAAGTTCATGATTTAGGTAGTCGAGTCAAACACAG
585 ACACCCAACGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAG
44906 G
650 G
* * *
44907 GATCCATTTTACCATGGCAAACAGATGACATTCTACAAACATTTCAAAATATGCAAAATT-TCCC
1 GATCCATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTAT-CC
* * * * *
44971 GATTGTGGAACAATCAAGCATCGAGGATATGTCAAAAGAGAGTGAAGAGTGTCCGCCGATTGTGG
65 GATTGTGGAACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGCCGACTGTGG
* * *
45036 GAATCGAACCCACGACCACATGGTTAAAAACCATGCGCTCTACCAACTGAGCTAAGACGGCTTCA
130 GAATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCTTCG
* * *
45101 TTAAGTGGTCTAACATAGTGAATATTGGAACTACAAATATGTCCACGTCGTTGGGATTTCATCTT
195 TTAAGTGGTCTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTT
* * *
45166 TATTTAATGGTTTATTATTGAAATAGTTATTTTTCCAAACTTGAGCAAAGTTTGGCAAAATCAGA
260 TATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGA
* * * * * *
45231 GTTTTCCCCAAAACCCCAAACGAAGTTGACGACCCTAAACACCACAAACTTTTGTTACTGTAGAA
325 GTTTCCCCCAAAAGCCCAAACGAAGTTGACGACCCTAAACGCCACGAACTTTTATTACTGTGGAA
*
45296 AGTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAG
390 AGTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAA
*
45361 TGACACGCCAAGGGACTTTTCGTCTTCAAAAATTCTGAACAATGAACAACAAGACAAAATCGGAA
455 TGACACGCCAAGGGCCTTTTCGTCTTCAAAAATTCTGAACAATGAACAACAAGACAAAATCGGAA
* *
45426 TTTCAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAACT
520 TCTAAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAACT
*
45491 ACACCCAACGATAAAGAAAAGACAACAGAAGAAATTAATGATTTAGGTAGTCGAGTCAAACACAG
585 ACACCCAACGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAG
45556 G
650 G
* * ** *
45557 GATCTATTTTACCAAGGCAAACAGATGACATGCTACAAATATTTCAAAATATAAAAAATTATCCG
1 GATCCATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCG
* *
45622 ATTGTGGAACAATCAAGTAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGATCGCCGACTGTGGG
66 ATTGTGGAACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGCCGACTGTGGG
* *
45687 AATCGAACCCACGACCACATGGTTAAAAGCTATGCGCTCTACCAGCTGATCTAAGACGGCTTCGT
131 AATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCTTCGT
* * * * *
45752 TAAATGGTTTAACATAGTGAATTTTGTCACTACAAATATGTCAACGACGTTGGGATTCCATCTTT
196 TAAGTGGTCTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTTT
*
45817 ATTTAATGGTTTCTTGTTGAAATAGTTATTTATCCAAACTTGAGCCAAGTTTGGCAAAATCAGAG
261 ATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGAG
* **
45882 TTTCCCTCAAAAGCCCAAACGAAGTTGACGACCCTAAACGCCATAAACTTTTATTACTGTGGAAA
326 TTTCCCCCAAAAGCCCAAACGAAGTTGACGACCCTAAACGCCACGAACTTTTATTACTGTGGAAA
*
45947 GTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAATTAAATCTAAGAATGAGCTTGAGTAAAT
391 GTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAAT
* * *
46012 GACACGCCAAGGGCCTTTTCGTCTTCAAAAATTATGAACAATGAACAACATGA-ATAAATCGAAA
456 GACACGCCAAGGGCCTTTTCGTCTTCAAAAATTCTGAACAATGAACAACAAGACA-AAATCGGAA
* * *
46076 TCTCAAATACTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGTTTCTATAACT
520 TCTAAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAACT
*
46141 ACACCCAACGATAAAGAAAAGACAACAGAGGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAG
585 ACACCCAACGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAG
46206 G
650 G
* * *
46207 GATCCATTTTACCAAGGCAAACAGATGACATTCTACAAACATTTCTAAATATGCAAAATT-TCCC
1 GATCCATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTAT-CC
* * * * *
46271 GATTGTGGAAAAATCAAGCATCGAGGAAATGGCAAAAGAGAGTGAAGAGTGTCTGCTGACTGTGG
65 GATTGTGGAACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGCCGACTGTGG
* *
46336 GAATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTTTACCAACTGAGCTAAGACGGCTTCG
130 GAATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCTTCG
* * *
46401 TTAAGTGGTCTAACATAGTGAATATTGGAACTACAAATATGTCCACGTCGTTGGGATTTCATCTT
195 TTAAGTGGTCTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTT
* *
46466 TATTTAATGGTTTCTTATTGAAATAGTTATTTTTCCAAACTTGAGCAAAGTTTGGCAAAATCAGA
260 TATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGA
* * *
46531 GTTTCCCCCAAAAGCCCAAACGAAATTGACGACCCTAAACGCCATGAACTTTTATTACTATGGAA
325 GTTTCCCCCAAAAGCCCAAACGAAGTTGACGACCCTAAACGCCACGAACTTTTATTACTGTGGAA
* *
46596 AGTAAAAGTTGTGCTCATAT-CCCAATAATATTCAATAAATAAATCTAATAATGAGCTTGAGTAA
390 AGTAAAAGGTGTGCTCAT-TGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAA
* *
46660 ATGACACGCCAAGGGCCTTTTTGTCTTCAAAAATTCTGAACAATGAACAACAAGACAAAATCAGA
454 ATGACACGCCAAGGGCCTTTTCGTCTTCAAAAATTCTGAACAATGAACAACAAGACAAAATCGGA
*
46725 ATCTAAAATATTATAGAAAATACCAATCTTATCCTTAAACGTTTCCTGATCCCCGCTTCTATAAC
519 ATCTAAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAAC
46790 TACACCCAACGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACA
584 TACACCCAACGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACA
*
46855 GT
649 GG
46857 GATCCATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCG
1 GATCCATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCG
*
46922 ATTGTGGAACAATCAATCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGCCGACTGTGGG
66 ATTGTGGAACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGCCGACTGTGGG
* * * *
46987 AATCGAACCCATGACCAGATGGTTAAAAGTCATGCGCTCTACCAGCTGAGCTAAGACGGCTTTGT
131 AATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCTTCGT
*
47052 TAAGTGGTCTAACATAGTGAATATTGGCA-TCAAAAATATGTCCACGACGTTGGGATTCCATCTT
196 TAAGTGGTCTAACATAGTGAATATTGGCACT-ACAAATATGTCCACGACGTTGGGATTCCATCTT
*
47116 TATTTAATGGTTTCTTGTTGAAATAGTTATTTTTTCAAACTTGAGCCAAGTTTGGCAAAATCAGA
260 TATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGA
* *
47181 GTTTCCCCTAAAAGCCCAAACAAAGTTGACGACCCTAAACGCCACGAACTTTTATTACTGTGGAA
325 GTTTCCCCCAAAAGCCCAAACGAAGTTGACGACCCTAAACGCCACGAACTTTTATTACTGTGGAA
47246 AGTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAA
390 AGTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAA
** * *
47311 TGACACGCCAACAGACTTTTCGACTTCAAAAATTCTGAA-AATGAACAACAAGACAAAATCGGAA
455 TGACACGCCAAGGGCCTTTTCGTCTTCAAAAATTCTGAACAATGAACAACAAGACAAAATCGGAA
* * *
47375 TCTCAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTTCTGATTCCCGCTTCTATAACT
520 TCTAAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAACT
*
47440 ACACCCAACGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAA
585 ACACCCAACGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAG
47505 G
650 G
* * *
47506 GA-CCAATTTTACAAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATACAGAATTATCT
1 GATCC-ATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCC
** * *
47570 GATTGTGGAACAATCAAGCAACGAGGAAATAACAAAAGAGAGTGAAGAGTGACTGCAGACTGTGG
65 GATTGTGGAACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGCCGACTGTGG
* *
47635 GAATCAAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGAGGGCTTCG
130 GAATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCTTCG
47700 TTAAGTGGTCTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTT
195 TTAAGTGGTCTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTT
* * *
47765 TATTTAATGGTTTCTTATTGAAATAGTTATTTTTCCAAACTTGAGCAAAGTTTGGCAAAATCAGT
260 TATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGA
* * * * *
47830 GTTTCCCCAAAAAACCCAAACGAAGTTGATGACCCTAAATGCCACGAAATTTTATTACTGTGGAA
325 GTTTCCCCCAAAAGCCCAAACGAAGTTGACGACCCTAAACGCCACGAACTTTTATTACTGTGGAA
*
47895 AGTAAAAGGTGTGCACATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAA
390 AGTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAA
* * * *
47960 TGACACGCCAAGGGCCTTTTCGTCTTCAAAACTTCTGAACAATGAACAATAAGACAAAACCGTAA
455 TGACACGCCAAGGGCCTTTTCGTCTTCAAAAATTCTGAACAATGAACAACAAGACAAAATCGGAA
* *
48025 TCTAAAATATTATAGAAAATTCCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTTTATAACT
520 TCTAAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAACT
* * *
48090 ACACCCAACGATAAAGAAAAGACAACAGAAGAAGTTAATAATTTAGTTAGTCGAGTCAAACACAT
585 ACACCCAACGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAG
48155 G
650 G
48156 GATCCATTTTACCAAGGCAAACAGATGACATGCTACAAAC-TTTCAAAATATGCAGAATTATCCG
1 GATCCATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCG
*** * * * *
48220 ATTAAAGAACAATCAAGCAACGAGAAAATGGAAAAAGGGAGTGAAGAGTGCCCGCCGACTGTGGG
66 ATTGTGGAACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGCCGACTGTGGG
48285 AATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCTTCGT
131 AATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCTTCGT
*
48350 TAAGTGGTCTAACATAGTGAATATTGGCACTACAAATATGTCCACGACATTGGGATTCCATCTTT
196 TAAGTGGTCTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTTT
* *
48415 ATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAAGTTGAGCCAAGTTTGGCAAAATCAAAG
261 ATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGAG
* *
48480 TTTCCCCCAAAAGCCCAAACAAAGTTGACGACCCTAAATGCCACGAACTTTTATTACTGTGGAAA
326 TTTCCCCCAAAAGCCCAAACGAAGTTGACGACCCTAAACGCCACGAACTTTTATTACTGTGGAAA
* *
48545 GTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTATGAATGAGCTTGTGTAAAT
391 GTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAAT
* * *
48610 AACACGCCAAGGGCCTTTTCGTCTTCAAAAATTATGAACAATGAACAACAAGACAAAATCGTAAT
456 GACACGCCAAGGGCCTTTTCGTCTTCAAAAATTCTGAACAATGAACAACAAGACAAAATCGGAAT
48675 CTAAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAACTA
521 CTAAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAACTA
*
48740 CACCCAAGGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAGG
586 CACCCAACGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAGG
48805 GATCCATTTTACCAAGG-AGAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCC
1 GATCCATTTTACCAAGGCA-AACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCC
* *
48869 GATTGTGGAACAATCAAGCAACGAGGAAATGGAAAAAGAGAGTGAAGAGTGACCACCGACTGTGG
65 GATTGTGGAACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGCCGACTGTGG
* *
48934 GAATCGATCCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCTTTG
130 GAATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCTTCG
48999 TTAAGTGGTCTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTT
195 TTAAGTGGTCTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTT
49064 TATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGA
260 TATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGA
* * * * *
49129 GTTTCCCCCAAAATCCCAAACGAAGTTGACTACCCTAAACACCACGAACTTTTGTTTCTGTGGAA
325 GTTTCCCCCAAAAGCCCAAACGAAGTTGACGACCCTAAACGCCACGAACTTTTATTACTGTGGAA
*
49194 AGTAAAAGGTGTGCTCATTACCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAA
390 AGTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAA
* * * *
49259 TGACACACCAAGGGCCTTTTCATCTTCAAAAATTCTGAACAATGAACAACAAGAAAAAATCAGAA
455 TGACACGCCAAGGGCCTTTTCGTCTTCAAAAATTCTGAACAATGAACAACAAGACAAAATCGGAA
* *
49324 TCTAAAATTTTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGTTTCTATAACT
520 TCTAAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAACT
* * *
49389 ATA-CCAACCGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGTGTCAAACGCA
585 ACACCCAA-CGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACA
*
49453 AG
649 GG
* * * *
49455 GATCCATTTTACCAAGGCAAACGGATGACATGCTATAAACATTTCAAAATATGTAGAATTATTCG
1 GATCCATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCG
* * *
49520 ATTGTGGAACAATCAAGCAACGAAGAAATGGCAAAAGAAAGTGAAGAGTGACCGTCGACTGTGGG
66 ATTGTGGAACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGCCGACTGTGGG
49585 AATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCTTCGT
131 AATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCTTCGT
49650 TAAGTGGTCTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTTT
196 TAAGTGGTCTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTTT
* * * * *
49715 ATTTAATGGTTTCTTCTTGAAATTGTTATCTTTCCAAACTTAAGCCAAGTTTGGCAAAATCATAG
261 ATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGAG
* * *
49780 TTTCCCCCAAAAGCCCAAACGATA-TTGACGACCCTAAACGCCACGAACTTTTGTTACTATAGAA
326 TTTCCCCCAAAAGCCCAAACGA-AGTTGACGACCCTAAACGCCACGAACTTTTATTACTGTGGAA
* * *
49844 AGTAAAAGGTGTGCTCATTG-CCATATAATTTTAAATAAATAAATCTAAAAATGAGCTTGAGTAA
390 AGTAAAAGGTGTGCTCATTGCCCA-ATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAA
* * **
49908 ATGGCACGCCAAGGGCCTTTTCGTCTTCAAAAATTCTGAACAATGAACAACAAGAAAAAATTAGA
454 ATGACACGCCAAGGGCCTTTTCGTCTTCAAAAATTCTGAACAATGAACAACAAGACAAAATCGGA
*
49973 ATCTAAAATATTATAGAAAATACCAATTTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAAC
519 ATCTAAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAAC
*
50038 TACACCCAACGATAAAGAAAAGTCAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACA
584 TACACCCAACGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACA
50103 GG
649 GG
* * * *
50105 GATCCATTTTACCAAGGCAAACAGGTGGCAAGCTACAAAAATTTCAAAATATGCAGAATTATCCG
1 GATCCATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCG
*** * * * *
50170 ATTAAAGAACAATCAAGCAACGAGGAAATGGCAAAAGAGAATGAAGATTGCCCACCGACTGTGGG
66 ATTGTGGAACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGCCGACTGTGGG
50235 AATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCTTCGT
131 AATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCTTCGT
50300 TAAGTGGTCTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTTT
196 TAAGTGGTCTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTTT
50365 ATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGAG
261 ATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGAG
* ***
50430 TTTCCCCCAAAAGCCCAAACGAAGTTGACGACCCTAAACACCACGAACTTTTATTACTGCAAAAA
326 TTTCCCCCAAAAGCCCAAACGAAGTTGACGACCCTAAACGCCACGAACTTTTATTACTGTGGAAA
* * *
50495 GTAAAAGGTGTGCTCATTACCCAATAATATTCAATAAATAAATATAAGAATGAGCTTGATTAAAT
391 GTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAAT
* *
50560 GACACGCCAAGGGCCTTTTTCGTCTTCAAAAATTCTGAACAATGAACAACAAGAAAAAATCAGAA
456 GACACGCCAAGGGCC-TTTTCGTCTTCAAAAATTCTGAACAATGAACAACAAGACAAAATCGGAA
*
50625 TCTAAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGTTTCTATAACT
520 TCTAAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAACT
* * * *
50690 ATA-CCAACCGATAAAGAAAAGACAGCAAAAGAAGTTAATGATTTAGGTAGTCGTGTCAAACACA
585 ACACCCAA-CGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACA
50754 GG
649 GG
*
50756 GATCCATTTTACCAAGGCAAACAGATGACATGCTATAAACATTTCAAAATATGCAGAATTATCCG
1 GATCCATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCG
* * * * * *
50821 ATTGTGGAATAATCAAGCAAAGAGGAAATGGCAAAAGAGAGTGCAGAGTGACCGCCCACTGAGAG
66 ATTGTGGAACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGCCGACTGTGGG
* *
50886 AATCGAACCCACAACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGG-TCTCA
131 AATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCT-TCG
*
50950 TTAAGTGGTCTAACATAGTGAATATTGGCACTACAAATATGTCCACGGCGTTGGGATTCCATCTT
195 TTAAGTGGTCTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTT
* * **
51015 TATTTAATGGTTTTTTGTTGAAATTGTTATTTTTCCAAACTTGAGCCAAGTTT-TAAAAATTCAG
260 TATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAA-TCAG
* * * *
51079 AGTTTCCCCCAAAAGCCCAAACGATGTTGACGACCCTAAACGCCACAAACTTTTGTTACTATGGA
324 AGTTTCCCCCAAAAGCCCAAACGAAGTTGACGACCCTAAACGCCACGAACTTTTATTACTGTGGA
51144 AAGTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAA
389 AAGTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAA
* * * *
51209 ATGACACGCCAAGGGCATTTTCGTCTTCAAAAATTCTGAACGATGAACAACAGGGA-AAAATTGG
454 ATGACACGCCAAGGGCCTTTTCGTCTTCAAAAATTCTGAACAATGAACAACA-AGACAAAATCGG
*
51273 AATCTAAAATATTATAGAAAATACCAATTTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAA
518 AATCTAAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAA
51338 CTACACCCAACGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACAC
583 CTACACCCAACGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACAC
51403 AGG
648 AGG
*
51406 GATCCATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATACAGAATTATCCG
1 GATCCATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCG
*
51471 ATTGTGGAACAATCAAGCAACGAGGAAATGGAAAAAGAGAGTGAAGAGTGACCGCCGACTGTGGG
66 ATTGTGGAACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGCCGACTGTGGG
* * * *
51536 AATCGAACCCACGACCACAAGGTTAAAAGCCATGTGCTCTACCAGCTGAGCTATGACGACTTCGT
131 AATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCTTCGT
* * * * *
51601 TAAGTGGTCTAACTTAGTGAATATTAGCACTACAAATTTGTCCACGACGTTGGAATTCCACCTTT
196 TAAGTGGTCTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTTT
*
51666 ATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATAAGAG
261 ATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGAG
* * ** * *
51731 TTTTCCCCAAAAGCCCAAACGAAGTTGAAGACCCTAAACGCCACGAACTTTGGTTTCTATGGAAA
326 TTTCCCCCAAAAGCCCAAACGAAGTTGACGACCCTAAACGCCACGAACTTTTATTACTGTGGAAA
51796 GTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAAT
391 GTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAAT
* *
51861 GACACGCCAAGGGCCTTTTCGTCTTTAAAAATTCTGAACAATGAACAACAGGACAAAATCGGAAT
456 GACACGCCAAGGGCCTTTTCGTCTTCAAAAATTCTGAACAATGAACAACAAGACAAAATCGGAAT
* * *
51926 TTCAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCTCGCTTCTATAACTA
521 CTAAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAACTA
* * * *
51991 CACCTAACGATAAAGAAAAGACAACAGAAGAAATTAATGATTTAGGTAGTCGAGTCAAATACCGG
586 CACCCAACGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAGG
* * ** *
52056 GATCTATTTTACCAAGGCAAACAGATGACATGCTACAAATATTTCAAAATATAAAAAATTATCCG
1 GATCCATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCG
* *
52121 ATTGTGGAACAATCAAGTAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGATCGCCGACTGTGGG
66 ATTGTGGAACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGCCGACTGTGGG
** * *
52186 AATCGAACCCACGACCACATGGTTAAAAGTTATGCGCTCTACCAGCTGATCTAAGAAGGCTTCGT
131 AATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCTTCGT
* * *
52251 TAAATGGTCTAACATAGTGAATATTGTCACTACAAATATGTCAACGACGTTGGGATTCCATCTTT
196 TAAGTGGTCTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTTT
*
52316 ATTTAATGGTTTCTTGTTGAAATAGTTATTTATCCAAACTTGAGCCAAGTTTGG-AATAATCAGA
261 ATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAA-AATCAGA
* **
52380 GTTTCCCTCAAAAGCCCAAACGAAGTTGACGACCCTAAACGCCATAAACTTTTATTACTGTGGAA
325 GTTTCCCCCAAAAGCCCAAACGAAGTTGACGACCCTAAACGCCACGAACTTTTATTACTGTGGAA
52445 AGTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAA
390 AGTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAA
* * *
52510 TGACACGCCAAGGGCCTTTTCGTCTTCAAAAATTATGAACAATGAACAACATGACAAAATCGAAA
455 TGACACGCCAAGGGCCTTTTCGTCTTCAAAAATTCTGAACAATGAACAACAAGACAAAATCGGAA
* * *
52575 TCTCAAATACTATAGAAAATACCAATCTTATCCTTAAACGATTCCTGATCCCCGCTTCTATAACT
520 TCTAAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAACT
* *
52640 ACATCCAACGATAAAGAAAAGACAACAGAAGAAATTAATGATTTAGGTAGTCGAGTCAAACACAG
585 ACACCCAACGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAG
52705 G
650 G
* * *
52706 GATCCATTTTACCAAGGTAAACAGATGACATTCTACAAACATTTCAAAATATGCAAAATT-TCCC
1 GATCCATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTAT-CC
* * *
52770 GATTGTGGAACAATCAAGCATCGAGGATATGGCAAAAGAGAGTGAAGAGTGTCCGCCGACTGTGG
65 GATTGTGGAACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGCCGACTGTGG
* *
52835 GAATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAACTGAGCTAAGACGACTTCG
130 GAATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCTTCG
* * *
52900 TTAAGTGGTCTAACATAGTGAATATTGGAACTACAAATATGTCCACGTCGTTGGGATTTCATCTT
195 TTAAGTGGTCTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTT
* *
52965 TATTTAATGGTTTCTTATTGAAATAGTTATTTTTCCAAACTTGAGCAAAGTTTGGCAAAATCAGA
260 TATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGA
*
53030 GTTTCCCCCAAAAGCCCAAACGAAGTTGACGACCCTAAACGCCACGAACTTTTATTGCTGTGGAA
325 GTTTCCCCCAAAAGCCCAAACGAAGTTGACGACCCTAAACGCCACGAACTTTTATTACTGTGGAA
53095 AGTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAA
390 AGTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAA
** * *
53160 TGACACGCCAACAGACTTTTCGACTTCAAAAATTCTGAA-AATGAACAACAAGACAAAATCGGAA
455 TGACACGCCAAGGGCCTTTTCGTCTTCAAAAATTCTGAACAATGAACAACAAGACAAAATCGGAA
* *
53224 TCTCAAATATTATAGAAAATACCAATCTTATCCTTAAACGATTCCTGATCCCCGCTTCTATAACT
520 TCTAAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAACT
*
53289 ACACCCAACGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAA
585 ACACCCAACGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAG
53354 G
650 G
* * *
53355 GACCCA-TTTACAAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATACAGAATTATCCG
1 GATCCATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCG
** * *
53419 ATTGTGGAACAATCAAGCAACGAGGAAATAACAAAAGAGAGTGAAGAGTGACTGCAGACTGTGGG
66 ATTGTGGAACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGCCGACTGTGGG
* * *
53484 AATCAAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAACTGAGCTAAGACGACTTCGT
131 AATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCTTCGT
* * *
53549 TAAGTGGTCTAACATAATGAATATTGGCACTACAAATATATCTACGACGTTGGGATTCCATCTTT
196 TAAGTGGTCTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTTT
* *
53614 ATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCAAAGTTTGGCAAAATCAGTG
261 ATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGAG
* * * *
53679 TTTCCCCAAAAAGACCAAACGAAGTTGATGACCCTAAATGCCACGAACTTTTATTACTGTGGAAA
326 TTTCCCCCAAAAGCCCAAACGAAGTTGACGACCCTAAACGCCACGAACTTTTATTACTGTGGAAA
*
53744 GTAAAAGGTGTGCACATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAAT
391 GTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAAT
* * * *
53809 GACACGCCAAGGGCCTTTTCGTCTTCAAAACTTCTGAACAATGAACAATAAGACAAAACCGTAAT
456 GACACGCCAAGGGCCTTTTCGTCTTCAAAAATTCTGAACAATGAACAACAAGACAAAATCGGAAT
* *
53874 CTAAAATATTATAGAAAATTCCAATCTTATCCTTAAACGGTTCCT-AGTCCCCGCTTTTATAACT
521 CTAAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGA-TCCCCGCTTCTATAACT
* *
53938 ACACCCAACGATAAAGAAAAGACAACAGAAAAAGTTAATGATTTAGGTAGTCGAGTCAAACATAG
585 ACACCCAACGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAG
54003 G
650 G
54004 GATCCATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCG
1 GATCCATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCG
* *
54069 ATTGTGGAACAATCAAGCAACAAGGAAATGGCAAATGAGAGTGAAGAGTGACCGCCGACTGTGGG
66 ATTGTGGAACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGCCGACTGTGGG
54134 AATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCTTCGT
131 AATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCTTCGT
54199 TAAGTGGTCTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTTT
196 TAAGTGGTCTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTTT
54264 ATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGAG
261 ATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGAG
* *
54329 TTTCCCCCAAAAGCCCAAACGAAGTTGACGACCCTAAACACCACGAACTTTTGTTACTGTGGAAA
326 TTTCCCCCAAAAGCCCAAACGAAGTTGACGACCCTAAACGCCACGAACTTTTATTACTGTGGAAA
54394 GTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAAT
391 GTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAAT
* * * *
54459 GACACGCCAACGGACTTTTCAAT-TTCAAAAATTCTGAA-AATGAACAACAAGACAAAATCAGAA
456 GACACGCCAAGGGCCTTTTC-GTCTTCAAAAATTCTGAACAATGAACAACAAGACAAAATCGGAA
* * *
54522 TCTCAAATATTATAGAAAATACCAATCTTATCCTTAAACAGTTCCTGATCCCCACTTCTATAACT
520 TCTAAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAACT
*
54587 ACACCCAACGATAAAGAAAAGACAACAGAAGAAGTTAATAATTTAGGTAGTCGAGTCAAACACAG
585 ACACCCAACGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAG
54652 G
650 G
*
54653 GATCCATTTTACCAAGGCAAACAGATGACATGCTACAAACTTTTCAAAATATGCAGAATTATCCG
1 GATCCATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCG
*** *
54718 ATTAAAGAACAATCAAGCAACGAGGAAATGGCAAAAGGGAGTGAAGAGTG-CACGCCGACTGTGG
66 ATTGTGGAACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGAC-CGCCGACTGTGG
* *
54782 GAATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAACTGAGCTAAGACAGCTTCG
130 GAATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCTTCG
54847 TTAAGTGGTCTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTT
195 TTAAGTGGTCTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTT
54912 TATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGA
260 TATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGA
* **
54977 GTTTCCCCCAAAAGCCCAAACAAAGTTGACGACCCTAAATTCCACGAACTTTTATTACTGTGGAA
325 GTTTCCCCCAAAAGCCCAAACGAAGTTGACGACCCTAAACGCCACGAACTTTTATTACTGTGGAA
* * *
55042 AGTAAAAGGTTTGCTCATTGCCCAATAATATTCAATAAATAAATCTATGAATGAGCTTGTGTAAA
390 AGTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAA
* * *
55107 TAACACGCCAAGGGCCTTTTCGTCTTCAAAAATTATGAACAATGAACAACAAGACAAAATCGTAA
455 TGACACGCCAAGGGCCTTTTCGTCTTCAAAAATTCTGAACAATGAACAACAAGACAAAATCGGAA
55172 TCTAAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAACT
520 TCTAAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAACT
* *
55237 ACACCCAAGGATAAAGAAAAGACAAAAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAG
585 ACACCCAACGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAG
55302 G
650 G
55303 GATCCATTTTACCAAGG-AGAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCC
1 GATCCATTTTACCAAGGCA-AACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCC
*
55367 GATTGTGGAACAATCAAGCAACAAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGCCGACTGTGG
65 GATTGTGGAACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGCCGACTGTGG
*
55432 GAATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACAGCTTCG
130 GAATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCTTCG
55497 TTAAGTGGTCTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTT
195 TTAAGTGGTCTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTT
*
55562 TATTCAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGA
260 TATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGA
* *
55627 GTTTCCCCCAAAAGCCCAAACAAAGTTGACGACCCTAAATGCCACGAACTTTTATTACTGTGGAA
325 GTTTCCCCCAAAAGCCCAAACGAAGTTGACGACCCTAAACGCCACGAACTTTTATTACTGTGGAA
* *
55692 AGTAAAAGGTGTGCTCATTACCCAATAATATTCAAAAAATAAATCTAAGAATGAGCTTGAGTAAA
390 AGTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAA
* * * *
55757 TGATACGCCAAGGTCTTTTTCGTCTTCAAAAATTCTGAACAATGAACAACAAGACAAAATAGGAA
455 TGACACGCCAAGGGCCTTTTCGTCTTCAAAAATTCTGAACAATGAACAACAAGACAAAATCGGAA
* *
55822 TCTAAAATATTATGGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGTTTCTATAACT
520 TCTAAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAACT
* * *
55887 ACACCCAACGATAAAGAAAAGACAACAAAAGAAATTAATGATTTAGGTAGTCGTGTCAAACACAG
585 ACACCCAACGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAG
55952 G
650 G
* *
55953 GATCCATTTTACCAAGGGAAACAGATGACATGCTACAAATATTTCAAAATATGCAGAATTATCCG
1 GATCCATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCG
* * * * *
56018 ATTGTGGAATAATCAAGCAAAGAGGAAATGGCAAAAGAGAGTGCAGAGTGACCGCCCACTGTGAG
66 ATTGTGGAACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGCCGACTGTGGG
* *
56083 AATCGAACCCACGACCACATGGTTAAATGCCATGCGCTCTACCAGCTGAGCTAAGACGG-TCTCA
131 AATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCT-TCG
*
56147 TTAAGTGGTCTAACATTGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTT
195 TTAAGTGGTCTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTT
*
56212 TATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTT-GAAAAATGCAG
260 TATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAAT-CAG
* * * *
56276 AGTTTCCCTCAAAAGCCCAAACGATGTTGACGACCCTAAACGCCACGAACTTTTGTTACTATGGA
324 AGTTTCCCCCAAAAGCCCAAACGAAGTTGACGACCCTAAACGCCACGAACTTTTATTACTGTGGA
*
56341 AAGTAAAAAGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAA
389 AAGTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAA
* * * * *
56406 ATGACACGCCAAGGG-CATTTCGTCTTCAAAAATTTTGAACAATGAACAACAGGAAAAAATTGGA
454 ATGACACGCCAAGGGCCTTTTCGTCTTCAAAAATTCTGAACAATGAACAACAAGACAAAATCGGA
* *
56470 ATCTAAAATATTATAGAAAATACCAATTTTATCCTTAAACGGTTCCTGATCCCCGCTCCTATAAC
519 ATCTAAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAAC
56535 TACACCCAACGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACA
584 TACACCCAACGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACA
56600 GG
649 GG
*
56602 GATCCATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATACAGAATTATCCG
1 GATCCATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCG
*
56667 ATTGTGGAACAATCAAGCAACGAGGAAATGGAAAAAGAGAGTGAAGAGTGACCGCCGACTGTGGG
66 ATTGTGGAACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGCCGACTGTGGG
* * *
56732 AATCGAACCCACGACCACATGGTTAAAAGCCATACGCTCTACCAGCTGAGGTATGACGGCTTCGT
131 AATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCTTCGT
* * *
56797 TAAGTGGTCTAACTTAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGAATTCCACCTTT
196 TAAGTGGTCTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTTT
*
56862 ATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATAAGAG
261 ATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGAG
* * * ** * *
56927 TTTTCCCCAAAAGCCCAAACGAAGTTGAAGACCCTAAATGCCACGAACTTTGGTTTCTATGGAAA
326 TTTCCCCCAAAAGCCCAAACGAAGTTGACGACCCTAAACGCCACGAACTTTTATTACTGTGGAAA
56992 GTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAAT
391 GTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAAT
* * * * *
57057 GACATGCCAATGGCCTTTTCGTCTTTAAAAATTCTGAACAATGAACAACAGGACAAAATCGAAAT
456 GACACGCCAAGGGCCTTTTCGTCTTCAAAAATTCTGAACAATGAACAACAAGACAAAATCGGAAT
* * * *
57122 TTCAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCATGATCCCTGCTTCTATAACTA
521 CTAAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAACTA
* * *
57187 CACCCAACGATAAAGAAAAGACAACATAAGAAATTAATGATTTAGGTAGTCGAGTCAAACATAGG
586 CACCCAACGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAGG
*
57252 GATCCATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCT
1 GATCCATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCG
* * *
57317 ATTGTGGAACAATCAAGTAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACTGTCGACTGTGGG
66 ATTGTGGAACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGCCGACTGTGGG
* * * *
57382 AATCGAACCCACAACCACATAGTTAAAAGCCATGTGCTCTACCAGCTGATCTAAGACGGCTTCGT
131 AATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCTTCGT
* * *
57447 TAAATGGTCTAACATAGTGAATATTGTCACTACAAATATGTCCACGACGTTGGGATTACATCTTT
196 TAAGTGGTCTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTTT
*
57512 ATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCGAAATCAGAG
261 ATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGAG
* ** * *
57577 TTTCCCCCAAAAGCCCAAACGAAGTTGACGACCCTAAATGCCATAAACTTTTATTATTGTAGAAA
326 TTTCCCCCAAAAGCCCAAACGAAGTTGACGACCCTAAACGCCACGAACTTTTATTACTGTGGAAA
*
57642 GTTAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAAT
391 GTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAAT
* *
57707 GACACGCCAAGGGCCTTTTCGTCTTCAAAAATTCTGAACAATGAACAACAGGACAAAATCGAAAT
456 GACACGCCAAGGGCCTTTTCGTCTTCAAAAATTCTGAACAATGAACAACAAGACAAAATCGGAAT
* * * *
57772 CTCAAATATAATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGACCCCCGTTTCTATAACTA
521 CTAAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAACTA
* *
57837 CACCCAACGATAAAGAAAAGTCAACAGAAAAAGTTAATGATTTAGGTAGTCGAGTCAAACACAGG
586 CACCCAACGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAGG
* * *
57902 GATCCATTTTACCAAGGCAAACAGATGACATTCTACAAACATTTCAAAATATGCAAAATTTTCCG
1 GATCCATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCG
* * **
57967 ATTGTGGAACAAATCAAGCAACGAGGAAATGGCGAAAGGGAGTGAAGAGTGACCTTCGACTGTGG
66 ATTGTGGAAC-AATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGCCGACTGTGG
* * * *
58032 GAATCGAACCCACGACAACATAGTTAAAAGCCATGCGCTCTACCAACTGAGCTAAGACGGCTTCA
130 GAATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCTTCG
* ** * *
58097 TTAAGTGGTGTAACATAGTGAATATTGTAACTACAAATATGTCCACGACGTTGGGATTTCATTTT
195 TTAAGTGGTCTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTT
*
58162 TATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATAAGA
260 TATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGA
* * *
58227 GTTTCCCCCAAAAGCCCAAACGAAGTTGACGACCCTATACGCCATGAACTTTTATTACTATGGAA
325 GTTTCCCCCAAAAGCCCAAACGAAGTTGACGACCCTAAACGCCACGAACTTTTATTACTGTGGAA
* *
58292 AGTAAAAGGTGTGCTCATAT-CCCAATACTATTCAATAAATAAATCTAATAATGAGCTTGAGTAA
390 AGTAAAAGGTGTGCTCAT-TGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAA
* *
58356 ATGACACGCCAAGGGCCTTTTTGTCTTCAAAAATTCTGAACAATAAACAACAAGACAAAATCGGA
454 ATGACACGCCAAGGGCCTTTTCGTCTTCAAAAATTCTGAACAATGAACAACAAGACAAAATCGGA
58421 ATCTAAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAAC
519 ATCTAAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAAC
*
58486 TACACCCAACGATAAAGAAAAGACAACAAAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACA
584 TACACCCAACGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACA
*
58551 GT
649 GG
*
58553 GATCCATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATACAGAATTATCCG
1 GATCCATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCG
*
58618 ATTGTGGAACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGTCGACTGTGGG
66 ATTGTGGAACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGCCGACTGTGGG
* *
58683 ATTCGAACCCACGACCACATGGTTAAAAGTCATGCGCTCTACCAGCTGAGCTAAGACGGCTTCGT
131 AATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCTTCGT
* *
58748 TAAGTGGTCTAACATAGTGAATATTGGCACTACAAATATGTCCACGACATTGGGATTCTATCTTT
196 TAAGTGGTCTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTTT
*
58813 ATTTAATGGTTTCTTGTTGAAATAGTTATTTTTTCAAACTTGAGCCAAGTTTGGCAAAATCAGAG
261 ATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGAG
*
58878 TTTCCCCCAAAAGCCCAAACGAAGTTGACGGCCCTAAACGCCACGAACTTTTATTACTGTGGAAA
326 TTTCCCCCAAAAGCCCAAACGAAGTTGACGACCCTAAACGCCACGAACTTTTATTACTGTGGAAA
58943 GTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAAT
391 GTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAAT
* * * * *
59008 GACACGCCAAGGGCCTTTTCATCTTCAAAAATTATGAACAATGAACGACATGACAAAATTGGAAT
456 GACACGCCAAGGGCCTTTTCGTCTTCAAAAATTCTGAACAATGAACAACAAGACAAAATCGGAAT
* * *
59073 CTAAAATATTATAGAAAATATCAATCTTATCCTTAAGCTGTTCCTGATCCCCGCTTCTATAACTA
521 CTAAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAACTA
* * * *
59138 CACCCAACAATAAAGAAAAGAAAACAGAAGAACTTAATGATTTAGGTAGTCGAGTCAAACACAGA
586 CACCCAACGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAGG
59203 GATCCATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCG
1 GATCCATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCG
* *
59268 ATTGTGGAACAATCAAGCAACGAAGAAATGGAAAAAGAGAGTGAAGAGTGACCGCCGACTGTGGG
66 ATTGTGGAACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGCCGACTGTGGG
* * *
59333 AATCAAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAACTGAGCTAAGAAGGCTTCGT
131 AATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCTTCGT
*
59398 TAAGTGGTCTAACATAGTGAATATTGGCACTACAAATATGTCCACGATGTTGGGATTCCATCTTT
196 TAAGTGGTCTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTTT
59463 ATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGAG
261 ATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGAG
** * * * * * *
59528 TTTCCCCCAAAAGTTCAAACGAAGTTGACAACCCTAAATGCCCCAAAATTTTATTACTGTTGAAA
326 TTTCCCCCAAAAGCCCAAACGAAGTTGACGACCCTAAACGCCACGAACTTTTATTACTGTGGAAA
59593 GTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAAT
391 GTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAAT
*
59658 GACACGCCAAGGGCCTTTTCGTCTTCAAAAATTCTGAACAATGAACAACATGACAAAATCGGAAT
456 GACACGCCAAGGGCCTTTTCGTCTTCAAAAATTCTGAACAATGAACAACAAGACAAAATCGGAAT
*
59723 CTATAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAACTA
521 CTAAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAACTA
* *
59788 CACCCAACGATAAAGAAAAGACAACAGAAGAAGTTAATGTTTTAGGTAGTCGAGTCAAACACATG
586 CACCCAACGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAGG
59853 GATCCATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCG
1 GATCCATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCG
* * *
59918 ATTATGGAACAATCAAGCAACGAGGAAATAGCAAAAGAGAGTGAAGAGTGACCGCCGATTGTGGG
66 ATTGTGGAACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGCCGACTGTGGG
* *
59983 AATCGAACCCACGATCACATGGTTAAAAGCCATGCGCTCTACGAGCTGAGCTAAGACGGCTTCGT
131 AATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCTTCGT
* *
60048 TAAGTGGTCTAACATAGTGAATATTGGCACTAAAAATATGTCCACGACATTGGGATTCCATCTTT
196 TAAGTGGTCTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTTT
* * * * *
60113 ATTTAACGATTTCTTGTTAAAATAGTTATTTTTCTAAACTTGAGCCAAGTTTGGCAAAATCAAAG
261 ATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGAG
* * * * * * **
60178 TTTCCCTCAAAAG-----TC-AAGTTGATGACCTTAAACGCCACAAACTTTTATTACGGTAAAAA
326 TTTCCCCCAAAAGCCCAAACGAAGTTGACGACCCTAAACGCCACGAACTTTTATTACTGTGGAAA
* ** *
60237 GTAGAAGGTGTGCTCATTGCAAAATAATA-TCTAATAAATAAATCTAAGAATGAGCTTGCGTAAA
391 GTAAAAGGTGTGCTCATTGCCCAATAATATTC-AATAAATAAATCTAAGAATGAGCTTGAGTAAA
* ** * * * * * *
60301 TGACACGCCAA-AGATTTTTTGTCTTTAAAAATTTTGAACAATAAACAACAATACAGAATCGGAA
455 TGACACGCCAAGGGCCTTTTCGTCTTCAAAAATTCTGAACAATGAACAACAAGACAAAATCGGAA
* * * * *
60365 TCTCAATTATTATTGAAAATACCAATCTTATCCTTAAACCGTTACTGAT-CCCGCTTCTATAACT
520 TCTAAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAACT
60429 ACACCCAACG
585 ACACCCAACG
60439 CCCGTGACTT
Statistics
Matches: 24114, Mismatches: 1712, Indels: 190
0.93 0.07 0.01
Matches are distributed among these distances:
642 26 0.00
643 670 0.03
644 106 0.00
645 2 0.00
648 699 0.03
649 7114 0.30
650 14263 0.59
651 1233 0.05
652 1 0.00
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (650 bp):
GATCCATTTTACCAAGGCAAACAGATGACATGCTACAAACATTTCAAAATATGCAGAATTATCCG
ATTGTGGAACAATCAAGCAACGAGGAAATGGCAAAAGAGAGTGAAGAGTGACCGCCGACTGTGGG
AATCGAACCCACGACCACATGGTTAAAAGCCATGCGCTCTACCAGCTGAGCTAAGACGGCTTCGT
TAAGTGGTCTAACATAGTGAATATTGGCACTACAAATATGTCCACGACGTTGGGATTCCATCTTT
ATTTAATGGTTTCTTGTTGAAATAGTTATTTTTCCAAACTTGAGCCAAGTTTGGCAAAATCAGAG
TTTCCCCCAAAAGCCCAAACGAAGTTGACGACCCTAAACGCCACGAACTTTTATTACTGTGGAAA
GTAAAAGGTGTGCTCATTGCCCAATAATATTCAATAAATAAATCTAAGAATGAGCTTGAGTAAAT
GACACGCCAAGGGCCTTTTCGTCTTCAAAAATTCTGAACAATGAACAACAAGACAAAATCGGAAT
CTAAAATATTATAGAAAATACCAATCTTATCCTTAAACGGTTCCTGATCCCCGCTTCTATAACTA
CACCCAACGATAAAGAAAAGACAACAGAAGAAGTTAATGATTTAGGTAGTCGAGTCAAACACAGG
Found at i:62139 original size:30 final size:32
Alignment explanation
Indices: 62105--62179 Score: 82
Period size: 33 Copynumber: 2.3 Consensus size: 32
62095 AATTTTTCAC
*
62105 TTTATATATAAACAAAAAA-TA-ATTAAATAA
1 TTTATATATAAACAAAAAAGTATATGAAATAA
** *
62135 TTTATATATTTTATAAAAAAGTATATGAAATAA
1 TTTATATA-TAAACAAAAAAGTATATGAAATAA
62168 TTATATATATAA
1 TT-TATATATAA
62180 TATTATAAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
30 8 0.23
31 8 0.23
32 2 0.06
33 11 0.31
34 6 0.17
ACGTcount: A:0.56, C:0.01, G:0.03, T:0.40
Consensus pattern (32 bp):
TTTATATATAAACAAAAAAGTATATGAAATAA
Found at i:62354 original size:15 final size:15
Alignment explanation
Indices: 62334--62374 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
62324 TATTTAAAAT
62334 TAAATAAATAATTTA
1 TAAATAAATAATTTA
*
62349 TAAATAATATTATTTA
1 TAAATAA-ATAATTTA
62365 -AAATAAATAA
1 TAAATAAATAA
62375 AATTATTTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
14 3 0.13
15 13 0.57
16 7 0.30
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (15 bp):
TAAATAAATAATTTA
Found at i:62372 original size:19 final size:19
Alignment explanation
Indices: 62319--62433 Score: 80
Period size: 19 Copynumber: 5.9 Consensus size: 19
62309 CTTTGGTTAC
62319 AATATTATTTAAAATTAAAT
1 AATATTATTTAAAA-TAAAT
*
62339 AA-ATAATTT---ATAAAT
1 AATATTATTTAAAATAAAT
62354 AATATTATTTAAAATAAAT
1 AATATTATTTAAAATAAAT
*
62373 AAAATTATTTCAAATGAATAAAT
1 AATATTATTT--AA--AATAAAT
*
62396 AATATGATTTTGAAAATTAAAT
1 AATATTA-TTT-AAAA-TAAAT
62418 AA-A-TATTTTAAAATAA
1 AATATTA-TTTAAAATAA
62434 TTTCATAATA
Statistics
Matches: 78, Mismatches: 7, Indels: 22
0.73 0.07 0.21
Matches are distributed among these distances:
15 7 0.09
16 7 0.09
18 3 0.04
19 25 0.32
20 7 0.09
21 5 0.06
22 7 0.09
23 14 0.18
24 3 0.04
ACGTcount: A:0.57, C:0.01, G:0.03, T:0.40
Consensus pattern (19 bp):
AATATTATTTAAAATAAAT
Found at i:62419 original size:22 final size:19
Alignment explanation
Indices: 62326--62431 Score: 69
Period size: 20 Copynumber: 5.4 Consensus size: 19
62316 TACAATATTA
*
62326 TTTAAAATTAAATAAATAA
1 TTTAAAATTAAATAAATAT
*
62345 TTTATAAA-T-AAT-ATTA-
1 TTTA-AAATTAAATAAATAT
62361 TTTAAAA-TAAATAAAATTAT
1 TTTAAAATTAAAT-AAA-TAT
* *
62381 TTCAAATGAATAAATAATATGAT
1 TTTAAA--ATTAAATAA-AT-AT
62404 TTTGAAAATTAAATAAATAT
1 TTT-AAAATTAAATAAATAT
62424 TTTAAAAT
1 TTTAAAAT
62432 AATTTCATAA
Statistics
Matches: 70, Mismatches: 5, Indels: 24
0.71 0.05 0.24
Matches are distributed among these distances:
15 4 0.06
16 7 0.10
17 3 0.04
18 4 0.06
19 12 0.17
20 13 0.19
21 2 0.03
22 12 0.17
23 10 0.14
24 3 0.04
ACGTcount: A:0.56, C:0.01, G:0.03, T:0.41
Consensus pattern (19 bp):
TTTAAAATTAAATAAATAT
Found at i:62435 original size:22 final size:22
Alignment explanation
Indices: 62410--62457 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
62400 TGATTTTGAA
*
62410 AATTAAATAAATATT-TTAAAAT
1 AATTAAAT-AATATTATAAAAAT
**
62432 AATTTCATAATATTATAAAAAT
1 AATTAAATAATATTATAAAAAT
62454 AATT
1 AATT
62458 TTAAAAATAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
21 6 0.27
22 16 0.73
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (22 bp):
AATTAAATAATATTATAAAAAT
Found at i:62470 original size:21 final size:21
Alignment explanation
Indices: 62427--62500 Score: 60
Period size: 21 Copynumber: 3.4 Consensus size: 21
62417 TAAATATTTT
* * *
62427 AAAATAATTTCATAATATTATA
1 AAAATAATTTTA-AAAATAATA
62449 AAAATAATTTTAAAAATAAT-
1 AAAATAATTTTAAAAATAATA
* *
62469 AATATAAATTTTATAAATATATA
1 AAAAT-AATTTTAAAAATA-ATA
*
62492 TAAATAATT
1 AAAATAATT
62501 ATTTAATTAT
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
20 4 0.10
21 18 0.43
22 17 0.40
23 3 0.07
ACGTcount: A:0.58, C:0.01, G:0.00, T:0.41
Consensus pattern (21 bp):
AAAATAATTTTAAAAATAATA
Found at i:62487 original size:33 final size:33
Alignment explanation
Indices: 62411--62487 Score: 79
Period size: 33 Copynumber: 2.4 Consensus size: 33
62401 GATTTTGAAA
* *
62411 ATTAAATAAAT-ATTTTAAAATAATTTCATAAT
1 ATTATATAAATAATTTTAAAATAATATCATAAT
*
62443 ATTATAAAAATAATTTTAAAAATAATAAT-ATAA-
1 ATTATATAAATAATTTT-AAAATAAT-ATCATAAT
*
62476 ATTTTATAAATA
1 ATTATATAAATA
62488 TATATAAATA
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
32 9 0.24
33 15 0.41
34 12 0.32
35 1 0.03
ACGTcount: A:0.57, C:0.01, G:0.00, T:0.42
Consensus pattern (33 bp):
ATTATATAAATAATTTTAAAATAATATCATAAT
Found at i:63456 original size:20 final size:20
Alignment explanation
Indices: 63433--63478 Score: 67
Period size: 20 Copynumber: 2.3 Consensus size: 20
63423 ATTCCTTAAG
63433 AAAATTAGTGAATAT-TTTTT
1 AAAATT-GTGAATATATTTTT
*
63453 AAAATTTTGAATATATTTTT
1 AAAATTGTGAATATATTTTT
63473 AAAATT
1 AAAATT
63479 TAAATTTTAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 7 0.29
20 17 0.71
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (20 bp):
AAAATTGTGAATATATTTTT
Found at i:63465 original size:19 final size:20
Alignment explanation
Indices: 63441--63479 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
63431 AGAAAATTAG
63441 TGAATAT-TTTTTAAAATTT
1 TGAATATATTTTTAAAATTT
63460 TGAATATATTTTTAAAATTT
1 TGAATATATTTTTAAAATTT
63480 AAATTTTACA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 7 0.37
20 12 0.63
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.56
Consensus pattern (20 bp):
TGAATATATTTTTAAAATTT
Found at i:64451 original size:22 final size:22
Alignment explanation
Indices: 64425--64525 Score: 94
Period size: 22 Copynumber: 4.5 Consensus size: 22
64415 TTAAAATAAA
*
64425 TTATTATAAAATATGGATTGAT
1 TTATTTTAAAATATGGATTGAT
** * *
64447 TTATTTTAAAATAATTTATTTTAA
1 TTATTTTAAAAT-ATGGA-TTGAT
* * * *
64471 ATAATTTATTAGTATGGATTGAT
1 TTATTTTA-AAATATGGATTGAT
64494 TTATTTTAAAATATGGATTGAT
1 TTATTTTAAAATATGGATTGAT
64516 TTATTTTAAA
1 TTATTTTAAA
64526 TAATTTATTA
Statistics
Matches: 59, Mismatches: 17, Indels: 6
0.72 0.21 0.07
Matches are distributed among these distances:
22 33 0.56
23 12 0.20
24 12 0.20
25 2 0.03
ACGTcount: A:0.39, C:0.00, G:0.10, T:0.51
Consensus pattern (22 bp):
TTATTTTAAAATATGGATTGAT
Found at i:64474 original size:14 final size:15
Alignment explanation
Indices: 64332--64480 Score: 165
Period size: 15 Copynumber: 9.5 Consensus size: 15
64322 TAATAAGGTT
64332 ATTTATTTTTAAAATA
1 ATTTA-TTTTAAAATA
64348 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
*
64363 ATTTATTATAAAATA
1 ATTTATTTTAAAATA
64378 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
* *
64393 AATTATTATAAAATA
1 ATTTATTTTAAAATA
*
64408 AATTATTTTAAAATA
1 ATTTATTTTAAAATA
* *
64423 AATTATTATAAAATATGGA
1 ATTTATT-TTAAA-AT--A
64442 TTGATTTATTTTAAAATA
1 ---ATTTATTTTAAAATA
64460 ATTTATTTT-AAATA
1 ATTTATTTTAAAATA
64474 ATTTATT
1 ATTTATT
64481 AGTATGGATT
Statistics
Matches: 118, Mismatches: 8, Indels: 16
0.83 0.06 0.11
Matches are distributed among these distances:
14 12 0.10
15 81 0.69
16 9 0.08
17 2 0.02
18 1 0.01
19 1 0.01
20 2 0.02
21 4 0.03
22 6 0.05
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (15 bp):
ATTTATTTTAAAATA
Found at i:64498 original size:32 final size:32
Alignment explanation
Indices: 64460--64792 Score: 251
Period size: 32 Copynumber: 11.4 Consensus size: 32
64450 TTTTAAAATA
64460 ATTTATTTTAAATAATTTATTAGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
64492 ATTTA-TTT---TAA---A--A-TATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
*
64514 ATTTATTTTAAATAATTTATTAGTACGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
64546 ATTTA-TTT---TAA---A--A-TATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
64568 ATTTATTTTAAATAATTTATTAGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
* *
64600 ATTTA--TT--AT--TGTAGTT-GTATAGATTG
1 ATTTATTTTAAATAATTTA-TTAGTATGGATTG
64626 ATTTA-TTT---TAA---A--A-TATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
64648 ATTTATTTTAAATAATTTATTAGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
* *
64680 ATTTATTTTAAAATATGGATTGATT--TAT-TATTG
1 ATTTATTTT-AAATA---ATTTATTAGTATGGATTG
64713 TAGTTGTAATTTTAAATAATTTATTAGTATGGATTG
1 -A-TT-T-ATTTTAAATAATTTATTAGTATGGATTG
*
64749 ATTTATTTTAAATAATTTATTAGTATAGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
64781 ATTTATTTTAAA
1 ATTTATTTTAAA
64793 ATATGGATTG
Statistics
Matches: 245, Mismatches: 10, Indels: 92
0.71 0.03 0.27
Matches are distributed among these distances:
22 40 0.16
23 11 0.04
25 3 0.01
26 27 0.11
27 4 0.02
28 8 0.03
29 3 0.01
30 2 0.01
31 9 0.04
32 89 0.36
33 16 0.07
34 6 0.02
35 6 0.02
36 16 0.07
37 5 0.02
ACGTcount: A:0.35, C:0.00, G:0.13, T:0.52
Consensus pattern (32 bp):
ATTTATTTTAAATAATTTATTAGTATGGATTG
Found at i:64525 original size:54 final size:54
Alignment explanation
Indices: 64460--65092 Score: 500
Period size: 54 Copynumber: 11.4 Consensus size: 54
64450 TTTTAAAATA
64460 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
*
64514 ATTTATTTTAAATAATTTATTAGTACGGATTGATTTATTTTAAAATATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
*** *
64568 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTATTGTAGTTGTATAGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTA-T-TT-TA-AAATATGGATTG
** ** * ** * * *
64626 ATTTATTTTAAA-ATATGGATT-G-ATTTATTTTAAATAATTTATTAGTATGGATTG
1 ATTTATTTTAAATA-ATTTATTAGTATGGA-TTGATTTATTTTA-AAATATGGATTG
* * * * *
64680 ATTTATTTTAAAATATGGATTGATTTATTATTGTAGTTGTAATTTTAAATAATTTATTAGTATGG
1 ATTTATTTT-AAATA---ATTTA-TTAGTA-TGGA-TTG--A-TTT--AT--TTTA-AAATATGG
64745 ATTG
51 ATTG
*
64749 ATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
* * * * *** * *
64803 ATTTATTTT-AA-AA--TA-T-GGATTGATTTA-TTATTGTAGTTGTATGTATTA
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTA-AAATATGGATTG
64851 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
* **
64905 ATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTT-AAATCATTTATTTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAAT-ATGGA-TTG
** * ** * * * ***
64960 TATGGA-TTGATTTATTTTA-AAATATGGATTGATTTATTATTGTAGTTGTATGGATTG
1 -ATTTATTTTAAATAATTTATTAGTATGGATTGATTTA-T-TT-TA-AAATATGGATTG
*
65017 ATTTAATTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
65071 ATTTATTTTAAATAATTTATTA
1 ATTTATTTTAAATAATTTATTA
65093 TTGTAGTTGT
Statistics
Matches: 461, Mismatches: 79, Indels: 78
0.75 0.13 0.13
Matches are distributed among these distances:
47 7 0.02
48 24 0.05
49 3 0.01
50 4 0.01
52 4 0.01
53 7 0.02
54 231 0.50
55 32 0.07
56 16 0.03
57 25 0.05
58 47 0.10
59 6 0.01
60 1 0.00
61 1 0.00
62 8 0.02
63 2 0.00
64 6 0.01
65 5 0.01
67 1 0.00
68 5 0.01
69 26 0.06
ACGTcount: A:0.34, C:0.00, G:0.13, T:0.52
Consensus pattern (54 bp):
ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
Found at i:64633 original size:134 final size:127
Alignment explanation
Indices: 64471--65028 Score: 523
Period size: 134 Copynumber: 4.3 Consensus size: 127
64461 TTTATTTTAA
64471 ATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTA
1 ATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTA
*
64536 GTACGGATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGA
66 GTATGGATTGATTTATTTTAAAATATGGATTGATTTA-TTT--AT-ATTTA-T-GTATGGATTGA
64601 TTT
125 TTT
* *
64604 ATTATTGTAGTT-GTATAGATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTAT
1 ATAATT-TA-TTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTAT
* *
64668 TAGTATGGATTGATTTATTTTAAAATATGGATTGATTTA-TTAT-TGTA-GT-TGTAATT--TTA
64 TAGTATGGATTGATTTATTTTAAAATATGGATTGATTTATTTATATTTATGTATG-GATTGATT-
*
64727 A
127 T
* * * * *
64728 ATAATTTATTAGTATGGATTGATTTATTTT-AAATA---ATTTA-TTAGTATAGATTGATTTATT
1 ATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTATTTTA-AATAATTTA--
* * **
64788 TTAAAATATGGATTGATTTATTTTAAAATATGGATTGATTTATTATTGTAGTTGTATGTATTAAT
63 TT--AGTATGGATTGATTTATTTTAAAATATGGATTGATTTA-T-TTATA-TT-TATGTATGGAT
*
64853 TTATTTT
122 TGA-TTT
64860 AAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTAT
1 --ATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTAT
* * * * **
64925 TAGTATAGATTGATTTATTTTAAATCATTTATTTGTATGGATTGATTTAT-TTTAAAATATGGAT
64 TAGTATGGATTGATTTATTTTAAA--A--TA--TGGATTGATTTATTTATATTT-ATGTATGGAT
64989 TGATTT
122 TGATTT
* *
64995 ATTATTGTAGTT-GTATGGATTGATTTAATTTAAA
1 ATAATT-TA-TTAGTATGGATTGATTTATTTTAAA
65029 TAATTTATTA
Statistics
Matches: 352, Mismatches: 36, Indels: 73
0.76 0.08 0.16
Matches are distributed among these distances:
118 6 0.02
119 11 0.03
121 2 0.01
122 7 0.02
123 59 0.17
124 7 0.02
125 5 0.01
126 3 0.01
128 4 0.01
129 2 0.01
130 8 0.02
131 1 0.00
132 2 0.01
133 12 0.03
134 165 0.47
135 13 0.04
136 13 0.04
138 16 0.05
139 7 0.02
140 9 0.03
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.52
Consensus pattern (127 bp):
ATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTA
GTATGGATTGATTTATTTTAAAATATGGATTGATTTATTTATATTTATGTATGGATTGATTT
Found at i:64643 original size:80 final size:79
Alignment explanation
Indices: 64541--64814 Score: 327
Period size: 80 Copynumber: 3.5 Consensus size: 79
64531 TATTAGTACG
64541 GATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTAT
1 GATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTAT
64606 TATTGTAGTTGTATA
66 TATTGTA-TTGTATA
64621 GATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTA-
1 GATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTAT
*** *
64685 T-TT-TAAAATATG
66 TATTGTATTGTATA
* *
64697 GATTGATTTA--TT---AT-TGTAGTTG--TAATTTTAAATAATTTATTAGTATGGATTGATTTA
1 GATTGATTTATTTTAAAATATGGA-TTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTA
*
64754 TTTTAAATAATTTATTAGTATA
65 --TT--AT--TGTATT-GTATA
64776 GATTGATTTATTTTAAAATATGGATTGATTTATTTTAAA
1 GATTGATTTATTTTAAAATATGGATTGATTTATTTTAAA
64815 ATATGGATTG
Statistics
Matches: 163, Mismatches: 12, Indels: 32
0.79 0.06 0.15
Matches are distributed among these distances:
69 34 0.21
70 3 0.02
71 5 0.03
72 1 0.01
74 2 0.01
75 1 0.01
76 13 0.08
77 3 0.02
78 4 0.02
79 14 0.09
80 64 0.39
81 2 0.01
84 5 0.03
85 3 0.02
86 9 0.06
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.52
Consensus pattern (79 bp):
GATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTAT
TATTGTATTGTATA
Found at i:64713 original size:102 final size:102
Alignment explanation
Indices: 64591--64911 Score: 434
Period size: 102 Copynumber: 3.2 Consensus size: 102
64581 AATTTATTAG
* * *
64591 TATGGATTGATTTATTATTGTAGTTGTATAGATTGATTTATTTTA-AAATATGGATTGATTTATT
1 TATGGATTGATTTATTATTGTAGTTGTATAGATTTA-TTATTTTAGTAGTATGGATTGATTTATT
64655 TTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
65 TTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
* * * *
64693 TATGGATTGATTTATTATTGTAGTTGTA-A-TTTTAAATAATTTATTAGTATGGATTGATTTATT
1 TATGGATTGATTTATTATTGTAGTTGTATAGATTT-ATTATTTTAGTAGTATGGATTGATTTATT
*
64756 TTAAATAATTTATTAGTATAGATTGATTTATTTTAAAA
65 TTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
** * * * * * * *
64794 TATGGATTGATTTATT-TTAAAATATGGATTGATTTATTATTGTAGTTGTATGTATTAATTTATT
1 TATGGATTGATTTATTATTGTAGT-TGTATAGATTTATTATTTTAGTAGTATGGATTGATTTATT
64858 TTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
65 TTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
64896 TATGGATTGATTTATT
1 TATGGATTGATTTATT
64912 TTAAATAATT
Statistics
Matches: 193, Mismatches: 21, Indels: 10
0.86 0.09 0.04
Matches are distributed among these distances:
100 12 0.06
101 75 0.39
102 103 0.53
103 3 0.02
ACGTcount: A:0.33, C:0.00, G:0.14, T:0.53
Consensus pattern (102 bp):
TATGGATTGATTTATTATTGTAGTTGTATAGATTTATTATTTTAGTAGTATGGATTGATTTATTT
TAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
Found at i:64728 original size:257 final size:252
Alignment explanation
Indices: 64425--65082 Score: 656
Period size: 257 Copynumber: 2.5 Consensus size: 252
64415 TTAAAATAAA
*
64425 TTATTATAAAATATGGATTGATTTATTTTAAAATAATTTATTTTAAATAATTTATTAGTATGGAT
1 TTATTTTAAAATATGGATTGATTTATTTT--AATAATTTATTTTAAATAATTTATTAGTATGGAT
* * *
64490 TGATTTATTTTAAAATATGGATTGATTTATTTTA-AATAATTTA-TT-AGTACGGATTGATTTAT
64 TGATTTATTTT-AAATA---ATTGA-TTAGTATAGAATAATTTATTTAAATACGGATTGATTTAT
* *
64552 TTTAAAATATGGATTGATTTATT-TTAAATAATT-TATTAGTATGGATTGA-TTT-ATTATTGTA
124 TTTAAAATATGGATTGATTTATTATT--ATAATTGTA-T-GTATGAATTGATTTTAATAATT-TA
*
64613 GTT-GTATAGATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATGGA
184 -TTAGTATAGATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATAGA
64677 TTGAT
248 TTGAT
* *
64682 TTATTTTAAAATATGGATTGATTTATTATT-GTAGTTGTAATTTTAAATAATTTATTAGTATGGA
1 TTATTTTAAAATATGGATTGATTTATT-TTAATAATT-T-ATTTTAAATAATTTATTAGTATGGA
* * * *
64746 TTGATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATATGGATTGATTTATTT
63 TTGATTTATTTTAAATAATTGATTAGTATAGAATAATTTA-TTT-AAATACGGATTGATTTATTT
* * * *
64811 TAAAATATGGATTGATTTATTATTGTAGTTGTATGTATTAATTTATTTTAAATAATTTATTAGTA
126 TAAAATATGGATTGATTTATTATTATAATTGTATGTATGAATTGATTTT-AATAATTTATTAGTA
*
64876 TGGATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATAGATTGAT
190 TAGATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATAGATTGAT
* * *
64939 TTATTTTAAATCATTTATTTGTATGGATTGATTTATTTTAA-AATATGGATTGATT-TATTATTG
1 TTATTTT-AA--A---A----TATGGATTGATTTATTTTAATAAT-T-TATT--TTAAATAATT-
* * * * * *
65002 TAGTT-GTATGGATTGATTTAATTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATG
51 TA-TTAGTATGGATTGATTTATTTTAAATAATTGATTAGTATAGAATAATTTA-TTT-AAATACG
65066 GATTGATTTATTTTAAA
113 GATTGATTTATTTTAAA
65083 TAATTTATTA
Statistics
Matches: 346, Mismatches: 25, Indels: 49
0.82 0.06 0.12
Matches are distributed among these distances:
252 6 0.02
253 11 0.03
255 14 0.04
256 16 0.05
257 176 0.51
258 11 0.03
260 1 0.00
263 1 0.00
266 7 0.02
267 23 0.07
268 78 0.23
269 2 0.01
ACGTcount: A:0.34, C:0.00, G:0.13, T:0.52
Consensus pattern (252 bp):
TTATTTTAAAATATGGATTGATTTATTTTAATAATTTATTTTAAATAATTTATTAGTATGGATTG
ATTTATTTTAAATAATTGATTAGTATAGAATAATTTATTTAAATACGGATTGATTTATTTTAAAA
TATGGATTGATTTATTATTATAATTGTATGTATGAATTGATTTTAATAATTTATTAGTATAGATT
GATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATAGATTGAT
Found at i:64756 original size:22 final size:22
Alignment explanation
Indices: 64662--64756 Score: 61
Period size: 22 Copynumber: 4.2 Consensus size: 22
64652 ATTTTAAATA
64662 ATTTATTAGTATGGATTGATTT
1 ATTTATTAGTATGGATTGATTT
* *
64684 ATTT-TAAAATATGGATTGATTT
1 ATTTAT-TAGTATGGATTGATTT
* * * *
64706 A-TTATT-GTAGTTGTAATTTTAAATA
1 ATTTATTAGTA--TG-GA--TTGATTT
64731 ATTTATTAGTATGGATTGATTT
1 ATTTATTAGTATGGATTGATTT
64753 ATTT
1 ATTT
64757 TAAATAATTT
Statistics
Matches: 52, Mismatches: 12, Indels: 18
0.63 0.15 0.22
Matches are distributed among these distances:
20 2 0.04
21 3 0.06
22 30 0.58
23 1 0.02
24 1 0.02
25 7 0.13
26 5 0.10
27 3 0.06
ACGTcount: A:0.32, C:0.00, G:0.15, T:0.54
Consensus pattern (22 bp):
ATTTATTAGTATGGATTGATTT
Found at i:64786 original size:18 final size:18
Alignment explanation
Indices: 64731--64787 Score: 59
Period size: 18 Copynumber: 3.4 Consensus size: 18
64721 ATTTTAAATA
*
64731 ATTTATTAGTATGGATTG
1 ATTTATTAGTATAGATTG
* *
64749 ATTTATT--T-TA-AATA
1 ATTTATTAGTATAGATTG
64763 ATTTATTAGTATAGATTG
1 ATTTATTAGTATAGATTG
64781 ATTTATT
1 ATTTATT
64788 TTAAAATATG
Statistics
Matches: 30, Mismatches: 5, Indels: 8
0.70 0.12 0.19
Matches are distributed among these distances:
14 9 0.30
15 1 0.03
16 2 0.07
17 2 0.07
18 16 0.53
ACGTcount: A:0.33, C:0.00, G:0.12, T:0.54
Consensus pattern (18 bp):
ATTTATTAGTATAGATTG
Found at i:64801 original size:22 final size:22
Alignment explanation
Indices: 64776--64831 Score: 112
Period size: 22 Copynumber: 2.5 Consensus size: 22
64766 TATTAGTATA
64776 GATTGATTTATTTTAAAATATG
1 GATTGATTTATTTTAAAATATG
64798 GATTGATTTATTTTAAAATATG
1 GATTGATTTATTTTAAAATATG
64820 GATTGATTTATT
1 GATTGATTTATT
64832 ATTGTAGTTG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.52
Consensus pattern (22 bp):
GATTGATTTATTTTAAAATATG
Found at i:64884 original size:80 final size:79
Alignment explanation
Indices: 64794--65077 Score: 426
Period size: 80 Copynumber: 3.5 Consensus size: 79
64784 TATTTTAAAA
*
64794 TATGGATTGATTTATTTTAAAATATGGATTGATTTATTATTGTAGTTGTATGTATTAATTTATTT
1 TATGGATTGATTTATTTTAAAATATGGATTGATTTATTATTGTAGTTGTATG-ATTGATTTATTT
64859 TAAATAATTTATTAG
65 TAAATAATTTATTAG
*
64874 TATGGATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTA-TTAGTATAGATTGA
1 TATGGATTGATTTATTTTAAAATATGGATTGATTTA--TT--AT--TGTAGTT-GTAT-GATTGA
* *
64938 TTTATTTTAAATCATTTATTTG
58 TTTATTTTAAATAATTTATTAG
*
64960 TATGGATTGATTTATTTTAAAATATGGATTGATTTATTATTGTAGTTGTATGGATTGATTTAATT
1 TATGGATTGATTTATTTTAAAATATGGATTGATTTATTATTGTAGTTGTAT-GATTGATTTATTT
65025 TAAATAATTTATTAG
65 TAAATAATTTATTAG
65040 TATGGATTGATTTATTTTAAAATATGGATTGATTTATT
1 TATGGATTGATTTATTTTAAAATATGGATTGATTTATT
65078 TTAAATAATT
Statistics
Matches: 186, Mismatches: 9, Indels: 18
0.87 0.04 0.08
Matches are distributed among these distances:
80 106 0.57
81 2 0.01
82 4 0.02
84 4 0.02
85 2 0.01
86 67 0.36
87 1 0.01
ACGTcount: A:0.33, C:0.00, G:0.14, T:0.53
Consensus pattern (79 bp):
TATGGATTGATTTATTTTAAAATATGGATTGATTTATTATTGTAGTTGTATGATTGATTTATTTT
AAATAATTTATTAG
Found at i:64887 original size:32 final size:32
Alignment explanation
Indices: 64841--64980 Score: 165
Period size: 32 Copynumber: 4.7 Consensus size: 32
64831 TATTGTAGTT
* *
64841 GTATGTATTAATTTATTTTAAATAATTTATTA
1 GTATGGATTGATTTATTTTAAATAATTTATTA
64873 GTATGGATTGATTTA-TTT---TAA---A--A
1 GTATGGATTGATTTATTTTAAATAATTTATTA
64896 -TATGGATTGATTTATTTTAAATAATTTATTA
1 GTATGGATTGATTTATTTTAAATAATTTATTA
* * *
64927 GTATAGATTGATTTATTTTAAATCATTTATTT
1 GTATGGATTGATTTATTTTAAATAATTTATTA
64959 GTATGGATTGATTTATTTTAAA
1 GTATGGATTGATTTATTTTAAA
64981 ATATGGATTG
Statistics
Matches: 92, Mismatches: 6, Indels: 20
0.78 0.05 0.17
Matches are distributed among these distances:
22 14 0.15
23 4 0.04
25 1 0.01
26 3 0.03
28 3 0.03
29 1 0.01
31 4 0.04
32 62 0.67
ACGTcount: A:0.34, C:0.01, G:0.11, T:0.54
Consensus pattern (32 bp):
GTATGGATTGATTTATTTTAAATAATTTATTA
Found at i:64890 original size:22 final size:22
Alignment explanation
Indices: 64874--64916 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
64864 AATTTATTAG
64874 TATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAAA
64896 TATGGATTGATTTATTTTAAA
1 TATGGATTGATTTATTTTAAA
64917 TAATTTATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.51
Consensus pattern (22 bp):
TATGGATTGATTTATTTTAAAA
Found at i:65065 original size:22 final size:22
Alignment explanation
Indices: 65040--65082 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
65030 AATTTATTAG
65040 TATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAAA
65062 TATGGATTGATTTATTTTAAA
1 TATGGATTGATTTATTTTAAA
65083 TAATTTATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.51
Consensus pattern (22 bp):
TATGGATTGATTTATTTTAAAA
Found at i:65142 original size:31 final size:31
Alignment explanation
Indices: 65107--65165 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
65097 AGTTGTATGG
* *
65107 ATTATTTAAATTTCAGTATTGTAAAACTAAA
1 ATTATTTAAATCTCAGTATTGCAAAACTAAA
65138 ATTATTTAAATCTCAGTATTGCAAAACT
1 ATTATTTAAATCTCAGTATTGCAAAACT
65166 CTTTTAAGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.42, C:0.10, G:0.07, T:0.41
Consensus pattern (31 bp):
ATTATTTAAATCTCAGTATTGCAAAACTAAA
Found at i:65632 original size:42 final size:41
Alignment explanation
Indices: 65582--65694 Score: 140
Period size: 42 Copynumber: 2.7 Consensus size: 41
65572 TTCCACGAAA
* * *
65582 TTTT-GTGTTTGTTTTATGTAATTCGTTTTTC-GAAAAATATT
1 TTTTCGTGTTTGTTTCACGTAATTCGTTTTACAG-AAAATA-T
65623 TTTTCGTGTTTGTTTCACGTAATTCGTTTTACAGAAAATAT
1 TTTTCGTGTTTGTTTCACGTAATTCGTTTTACAGAAAATAT
* *
65664 TTTCCAGTATTTGTTTCACGTAATTCGTTTT
1 TTTTC-GTGTTTGTTTCACGTAATTCGTTTT
65695 CCGGAATGTA
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
41 9 0.14
42 54 0.84
43 1 0.02
ACGTcount: A:0.21, C:0.11, G:0.14, T:0.54
Consensus pattern (41 bp):
TTTTCGTGTTTGTTTCACGTAATTCGTTTTACAGAAAATAT
Found at i:65900 original size:22 final size:23
Alignment explanation
Indices: 65872--65925 Score: 74
Period size: 22 Copynumber: 2.3 Consensus size: 23
65862 CATTTTCATC
*
65872 AAAATATTTTTATTAAAATTT-T
1 AAAATATATTTATTAAAATTTAT
*
65894 AAAATATATTTATTAATATTTAT
1 AAAATATATTTATTAAAATTTAT
65917 AATAATATA
1 AA-AATATA
65926 ATATTATATT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
22 19 0.68
23 3 0.11
24 6 0.21
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (23 bp):
AAAATATATTTATTAAAATTTAT
Found at i:65934 original size:22 final size:23
Alignment explanation
Indices: 65882--65947 Score: 66
Period size: 22 Copynumber: 3.0 Consensus size: 23
65872 AAAATATTTT
* *
65882 TATTAAAATTT-TAA-AATATATT
1 TATTAATATTTATAATAATATA-A
65904 TATTAATATTTATAATAATATAA
1 TATTAATATTTATAATAATATAA
* *
65927 TATT-ATATTTTTAATATTATA
1 TATTAATATTTATAATAATATA
65948 TAAAATAATC
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
22 25 0.66
23 7 0.18
24 6 0.16
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (23 bp):
TATTAATATTTATAATAATATAA
Found at i:66000 original size:24 final size:23
Alignment explanation
Indices: 65950--66014 Score: 67
Period size: 23 Copynumber: 2.7 Consensus size: 23
65940 ATATTATATA
* *
65950 AAATAATCAATTATATTATAATAAT
1 AAATAATAAATT-T-TTTTAATAAT
* *
65975 AAGATATTATATTTTTTTAATAAT
1 AA-ATAATAAATTTTTTTAATAAT
65999 AAATAATAAATTTTTT
1 AAATAATAAATTTTTT
66015 ATATATTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
23 12 0.36
24 11 0.33
25 3 0.09
26 7 0.21
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.48
Consensus pattern (23 bp):
AAATAATAAATTTTTTTAATAAT
Found at i:66027 original size:29 final size:28
Alignment explanation
Indices: 65990--66057 Score: 84
Period size: 29 Copynumber: 2.4 Consensus size: 28
65980 ATTATATTTT
*
65990 TTTAATAATAAATAATAAATTTTTTATATA
1 TTTAATAATAAATAAT--ATTATTTATATA
*
66020 -TTAATAATGAATAATATTATTTATATA
1 TTTAATAATAAATAATATTATTTATATA
66047 TTTAAATAATA
1 TTT-AATAATA
66058 TTTTAGTAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
27 11 0.33
28 2 0.06
29 20 0.61
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.49
Consensus pattern (28 bp):
TTTAATAATAAATAATATTATTTATATA
Found at i:66057 original size:25 final size:24
Alignment explanation
Indices: 65998--66057 Score: 75
Period size: 27 Copynumber: 2.4 Consensus size: 24
65988 TTTTTAATAA
*
65998 TAAATAATAAATTTTTTATATATT
1 TAAATAATAAATTATTTATATATT
*
66022 AATAATGAATAATATTATTTATATATT
1 TA-AAT-AATAA-ATTATTTATATATT
66049 TAAATAATA
1 TAAATAATA
66058 TTTTAGTAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
24 1 0.03
25 7 0.23
26 8 0.27
27 14 0.47
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (24 bp):
TAAATAATAAATTATTTATATATT
Found at i:66235 original size:27 final size:27
Alignment explanation
Indices: 66205--66257 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
66195 CAATTATAAA
66205 TTTAATA-TTTAATAATAAATAA-ATTAT
1 TTTAATATTTTAA-AAT-AATAATATTAT
66232 TTTAATATTTTAAAATAATAATATTA
1 TTTAATATTTTAAAATAATAATATTA
66258 AGTTTTATGA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 5 0.21
27 14 0.58
28 5 0.21
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (27 bp):
TTTAATATTTTAAAATAATAATATTAT
Found at i:66412 original size:20 final size:20
Alignment explanation
Indices: 66387--66476 Score: 121
Period size: 20 Copynumber: 4.5 Consensus size: 20
66377 TTTCCAGATG
66387 TTTTTCAGAAATGTAATTCA
1 TTTTTCAGAAATGTAATTCA
66407 TTTTTCAGAAATGTAATTCA
1 TTTTTCAGAAATGTAATTCA
*
66427 -TTTTCAAGAAATGTAATTCTT
1 TTTTTC-AGAAATGTAATTC-A
* *
66448 TTTTTTA-AAATATAATTCA
1 TTTTTCAGAAATGTAATTCA
66467 TTTTTCAGAA
1 TTTTTCAGAA
66477 TTCAAATTTC
Statistics
Matches: 61, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
19 11 0.18
20 45 0.74
21 1 0.02
22 4 0.07
ACGTcount: A:0.36, C:0.09, G:0.08, T:0.48
Consensus pattern (20 bp):
TTTTTCAGAAATGTAATTCA
Found at i:67220 original size:15 final size:15
Alignment explanation
Indices: 67200--67231 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
67190 CAAACACTGA
67200 GCTTACTAGATCAGT
1 GCTTACTAGATCAGT
67215 GCTTACTAGATCAGT
1 GCTTACTAGATCAGT
67230 GC
1 GC
67232 CACACTAACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (15 bp):
GCTTACTAGATCAGT
Found at i:67962 original size:19 final size:20
Alignment explanation
Indices: 67938--67985 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
67928 GTGATCCCGA
67938 TATCGATACC-ACCCATG-AG
1 TATCGATACCAACCC-TGTAG
67957 TATCGATACCAACCCTGTAG
1 TATCGATACCAACCCTGTAG
67977 TATCGATAC
1 TATCGATAC
67986 TCTATTAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
19 12 0.44
20 15 0.56
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (20 bp):
TATCGATACCAACCCTGTAG
Found at i:68329 original size:15 final size:15
Alignment explanation
Indices: 68309--68338 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
68299 TATATTACGT
*
68309 ATGAAAAAATGTATA
1 ATGAAAAAATATATA
68324 ATGAAAAAATATATA
1 ATGAAAAAATATATA
68339 TATGTATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.10, T:0.27
Consensus pattern (15 bp):
ATGAAAAAATATATA
Found at i:68719 original size:31 final size:31
Alignment explanation
Indices: 68681--68741 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
68671 TTGTCACCCA
*
68681 TAAAATTTTATAAGTTCAAGTTCATCCCCTC
1 TAAAATTTTATAAGTTCAAGTTCACCCCCTC
68712 TAAAATTTTATAAGTTCAAGTTCACCCCCT
1 TAAAATTTTATAAGTTCAAGTTCACCCCCT
68742 AACTTAAAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.33, C:0.23, G:0.07, T:0.38
Consensus pattern (31 bp):
TAAAATTTTATAAGTTCAAGTTCACCCCCTC
Found at i:69559 original size:17 final size:17
Alignment explanation
Indices: 69537--69571 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
69527 CTGGATAATG
69537 TGGAAAAAAATAACAGT
1 TGGAAAAAAATAACAGT
69554 TGGAAAAAAATAACAGT
1 TGGAAAAAAATAACAGT
69571 T
1 T
69572 TTTCTTCTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.57, C:0.06, G:0.17, T:0.20
Consensus pattern (17 bp):
TGGAAAAAAATAACAGT
Found at i:72218 original size:18 final size:19
Alignment explanation
Indices: 72176--72215 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
72166 TTTGGTTCAC
*
72176 GGAATGTAAGATTATCAGTG
1 GGAATGTAAGATTACCAG-G
72196 GGAATGTAAGATTACCAGG
1 GGAATGTAAGATTACCAGG
72215 G
1 G
72216 AATAGGATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 2 0.11
20 17 0.89
ACGTcount: A:0.35, C:0.07, G:0.33, T:0.25
Consensus pattern (19 bp):
GGAATGTAAGATTACCAGG
Found at i:73813 original size:11 final size:11
Alignment explanation
Indices: 73797--73829 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
73787 TTCTTAATCA
73797 ATTAATATTTT
1 ATTAATATTTT
73808 ATTAATATTTT
1 ATTAATATTTT
73819 -TTATATATTTT
1 ATTA-ATATTTT
73830 TTATTACCCC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 3 0.14
11 18 0.86
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (11 bp):
ATTAATATTTT
Found at i:73822 original size:13 final size:13
Alignment explanation
Indices: 73804--73835 Score: 50
Period size: 11 Copynumber: 2.6 Consensus size: 13
73794 TCAATTAATA
73804 TTTTATTAATATT
1 TTTTATTAATATT
73817 TTTTA-T-ATATT
1 TTTTATTAATATT
73828 TTTTATTA
1 TTTTATTA
73836 CCCCGCCCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 4
0.81 0.00 0.19
Matches are distributed among these distances:
11 10 0.59
12 2 0.12
13 5 0.29
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (13 bp):
TTTTATTAATATT
Found at i:74091 original size:21 final size:21
Alignment explanation
Indices: 74067--74106 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
74057 CGATGGCTGT
*
74067 AATAGGGTCCGCGACGACCGC
1 AATAGCGTCCGCGACGACCGC
*
74088 AATAGCGTCCGTGACGACC
1 AATAGCGTCCGCGACGACC
74107 ATAATCACGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.25, C:0.33, G:0.30, T:0.12
Consensus pattern (21 bp):
AATAGCGTCCGCGACGACCGC
Found at i:87680 original size:29 final size:27
Alignment explanation
Indices: 87648--87701 Score: 63
Period size: 29 Copynumber: 1.9 Consensus size: 27
87638 ATATTTTTTT
87648 TTAAATATTATTATATTTATTAAAATACC
1 TTAAATATTATTATA-TTA-TAAAATACC
* * *
87677 TTAACTTTTTTTATATTATAAAATA
1 TTAAATATTATTATATTATAAAATA
87702 GTCCCAAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 7 0.32
28 3 0.14
29 12 0.55
ACGTcount: A:0.43, C:0.06, G:0.00, T:0.52
Consensus pattern (27 bp):
TTAAATATTATTATATTATAAAATACC
Found at i:88057 original size:23 final size:21
Alignment explanation
Indices: 88028--88082 Score: 65
Period size: 23 Copynumber: 2.5 Consensus size: 21
88018 TTAGGGATTA
**
88028 TTTTAAAATTTATGTGTTTTATT
1 TTTTAAAATTTAT-AATTTTA-T
*
88051 TTTTAAAATATATAATTTTAT
1 TTTTAAAATTTATAATTTTAT
88072 TTTTAAAATTT
1 TTTTAAAATTT
88083 TATATAGCAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 11 0.39
22 5 0.18
23 12 0.43
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.62
Consensus pattern (21 bp):
TTTTAAAATTTATAATTTTAT
Done.