Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009248.1 Hibiscus syriacus cultivar Beakdansim tig00112889_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  120552

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4347--4405
25
2.4
25
88
5
84
22
5
28
44
1.74
7359--7395
19
1.9
19
88
0
56
40
8
16
35
1.78
8774--8835
23
2.7
23
92
2
99
12
12
11
62
1.54
9339--9378
20
2.0
21
95
5
73
32
20
20
27
1.97
14236--14260
12
2.1
12
100
0
50
44
0
0
56
0.99
16158--16222
29
2.2
29
83
5
78
41
6
4
47
1.49
21084--21123
19
2.1
19
86
9
55
57
5
0
37
1.21
34544--34577
2
17.0
2
93
0
59
0
47
0
52
1.00
38954--39043
39
2.3
39
94
1
162
28
11
31
28
1.91
49817--49932
24
4.8
24
85
7
146
27
13
18
40
1.88
49833--49895
12
5.2
12
72
14
58
26
12
22
38
1.90
50109--50170
2
31.0
2
100
0
124
50
0
0
50
1.00
51724--51901
89
2.0
89
97
0
338
42
17
10
30
1.82
68994--69036
21
2.1
20
86
4
59
39
16
16
27
1.90
70336--70368
2
16.5
2
100
0
66
51
0
0
48
1.00
78932--78974
10
4.2
10
81
3
50
69
2
2
25
1.12
79491--79538
10
4.7
10
79
5
51
22
4
4
68
1.24
90352--90410
4
14.8
4
100
0
118
50
23
0
25
1.49
94353--94480
2
66.5
2
75
16
92
43
1
7
47
1.39
94344--94394
17
3.1
17
85
2
77
47
0
9
43
1.36
94584--94645
7
8.4
8
81
16
80
56
0
8
35
1.29
94584--94645
15
4.2
16
84
15
80
56
0
8
35
1.29
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94584--94645
22
2.8
22
97
0
115
56
0
8
35
1.29
94694--94823
12
11.0
12
74
8
79
43
2
11
43
1.53
94716--94844
12
11.6
11
73
8
70
45
3
10
41
1.53
94695--94826
2
67.0
2
72
14
69
43
2
10
43
1.51
96478--96588
4
26.5
4
67
18
57
64
2
1
30
1.17
96518--96581
18
3.4
18
89
4
83
64
3
1
31
1.19
96533--96583
18
2.8
18
93
0
84
66
3
1
27
1.20
100539--100646
42
2.6
42
86
4
148
33
20
20
25
1.97
100628--100996
88
4.2
88
86
5
480
33
19
18
28
1.95
100628--100996
174
2.1
179
86
5
511
33
19
18
28
1.95
101004--101102
42
2.4
42
88
5
139
33
20
21
25
1.97
101004--101126
42
3.0
42
84
3
133
32
21
20
25
1.98
101168--101459
42
7.0
42
90
1
442
28
28
14
28
1.95
101168--101459
127
2.3
126
90
1
451
28
28
14
28
1.95
101462--101748
105
2.8
105
95
2
510
20
23
19
36
1.95
102671--102780
8
14.0
8
83
11
84
6
9
0
84
0.77
102658--102776
30
3.8
31
84
6
125
5
9
0
85
0.73
102658--102761
54
1.9
54
86
0
145
3
8
0
87
0.65
102685--102760
1
76.0
1
86
0
98
2
5
0
92
0.47
102659--102777
32
4.2
29
75
17
106
5
10
0
84
0.75
102732--102790
30
1.9
31
86
6
84
10
15
0
74
1.06
102728--102790
22
2.9
21
75
15
65
9
14
0
76
1.02
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106315--106341
14
1.9
14
100
0
54
66
3
22
7
1.33
118262--118369
42
2.6
42
88
7
141
32
19
21
26
1.97
118351--118728
90
4.2
90
88
1
535
34
20
17
27
1.95
118767--118834
22
3.2
21
64
17
50
33
23
17
25
1.96
118711--118860
42
3.6
42
78
6
144
32
20
20
26
1.97
118953--119017
22
3.0
22
61
17
55
23
32
15
29
1.95
118889--119274
85
4.5
86
88
1
573
27
31
14
26
1.95
118889--119274
43
9.0
43
89
2
582
27
31
14
26
1.95
118889--119275
171
2.3
171
90
3
593
27
31
14
26
1.95
118889--119274
128
3.0
129
90
1
600
27
31
14
26
1.95

Tables:   1

The End!