Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009249.1 Hibiscus syriacus cultivar Beakdansim tig00112890_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 41795
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.34
Found at i:232 original size:20 final size:20
Alignment explanation
Indices: 207--352 Score: 171
Period size: 20 Copynumber: 7.6 Consensus size: 20
197 ATAATAGTTT
207 ACTATCGCAATGCGAAAATG
1 ACTATCGCAATGCGAAAATG
*
227 ACTATCGCAACGCG-AAATG
1 ACTATCGCAATGCGAAAATG
*
246 ACTATCGCAA--CG-AGA-G
1 ACTATCGCAATGCGAAAATG
*
262 A--ATCGCAATGCAAAAAATG
1 ACTATCGCAATGC-GAAAATG
281 ACTATCGCAATGCGAAAATG
1 ACTATCGCAATGCGAAAATG
* *
301 ACTATCGCAATGAGAAACTG
1 ACTATCGCAATGCGAAAATG
**
321 ACTATCGCAATGCGAATTTG
1 ACTATCGCAATGCGAAAATG
341 ACTATCGCAATG
1 ACTATCGCAATG
353 AAAGAATTGC
Statistics
Matches: 109, Mismatches: 10, Indels: 14
0.82 0.08 0.11
Matches are distributed among these distances:
14 7 0.06
16 3 0.03
17 4 0.04
18 2 0.02
19 17 0.16
20 66 0.61
21 10 0.09
ACGTcount: A:0.39, C:0.21, G:0.20, T:0.20
Consensus pattern (20 bp):
ACTATCGCAATGCGAAAATG
Found at i:296 original size:54 final size:54
Alignment explanation
Indices: 210--315 Score: 169
Period size: 54 Copynumber: 2.0 Consensus size: 54
200 ATAGTTTACT
*
210 ATCGCAATGCGAAAATGACTATCGCAACGCG-AAATGACTATCGCAACGAGAGA
1 ATCGCAATGCAAAAATGACTATCGCAACGCGAAAATGACTATCGCAACGAGAGA
* *
263 ATCGCAATGCAAAAAATGACTATCGCAATGCGAAAATGACTATCGCAATGAGA
1 ATCGCAATGC-AAAAATGACTATCGCAACGCGAAAATGACTATCGCAACGAGA
316 AACTGACTAT
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
53 10 0.21
54 19 0.40
55 19 0.40
ACGTcount: A:0.42, C:0.21, G:0.21, T:0.17
Consensus pattern (54 bp):
ATCGCAATGCAAAAATGACTATCGCAACGCGAAAATGACTATCGCAACGAGAGA
Found at i:422 original size:20 final size:20
Alignment explanation
Indices: 397--443 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
387 GATTCTCTCG
397 TTGCGATAGTCAAATTCGCA
1 TTGCGATAGTCAAATTCGCA
** *
417 TTGCGATAGTCATTTTCGCG
1 TTGCGATAGTCAAATTCGCA
437 TTGCGAT
1 TTGCGAT
444 TTTGTTGTGT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.21, C:0.19, G:0.23, T:0.36
Consensus pattern (20 bp):
TTGCGATAGTCAAATTCGCA
Found at i:533 original size:20 final size:20
Alignment explanation
Indices: 481--539 Score: 91
Period size: 20 Copynumber: 3.0 Consensus size: 20
471 CGATTCCTCG
**
481 TTGCGATAGTCAAATTCGCA
1 TTGCGATAGTCATTTTCGCA
501 TTGCGATAGTCATTTTCGCA
1 TTGCGATAGTCATTTTCGCA
*
521 TTGCGATTGTCATTTTCGC
1 TTGCGATAGTCATTTTCGC
540 GTTGTGATTT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.20, C:0.20, G:0.20, T:0.39
Consensus pattern (20 bp):
TTGCGATAGTCATTTTCGCA
Found at i:2461 original size:14 final size:14
Alignment explanation
Indices: 2442--2477 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
2432 ATTGTTTAAT
2442 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
* *
2456 TGATTTGTAAATGT
1 TGATTTGTAAAAGA
2470 TGATTTGT
1 TGATTTGT
2478 TTAATTGATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.22, T:0.47
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:2609 original size:20 final size:20
Alignment explanation
Indices: 2570--2609 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
2560 ATGCAAAACA
* * *
2570 GACTATTGCAACGCGGAAAT
1 GACTATCGCAACGAGAAAAT
2590 GACTATCGCAACGAGAAAAT
1 GACTATCGCAACGAGAAAAT
2610 CGCAATGCGA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.40, C:0.20, G:0.23, T:0.17
Consensus pattern (20 bp):
GACTATCGCAACGAGAAAAT
Found at i:2631 original size:33 final size:33
Alignment explanation
Indices: 2585--2652 Score: 100
Period size: 33 Copynumber: 2.1 Consensus size: 33
2575 TTGCAACGCG
**
2585 GAAATGACTATCGCAACGAGAAAATCGCAATGC
1 GAAATGAAAATCGCAACGAGAAAATCGCAATGC
**
2618 GAAATGAAAATCGCAACGAGTGAATCGCAATGC
1 GAAATGAAAATCGCAACGAGAAAATCGCAATGC
2651 GA
1 GA
2653 TAGTCATTTC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.43, C:0.19, G:0.24, T:0.15
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAAAATCGCAATGC
Found at i:2670 original size:19 final size:19
Alignment explanation
Indices: 2648--2730 Score: 107
Period size: 19 Copynumber: 4.3 Consensus size: 19
2638 TGAATCGCAA
2648 TGCGATAGTCATTTCGCGT
1 TGCGATAGTCATTTCGCGT
* *
2667 TGCGATAGTCAATTCCGCAT
1 TGCGATAGTC-ATTTCGCGT
2687 TGCGATAGTCATTTC-CGTT
1 TGCGATAGTCATTTCGCG-T
2706 TGCGATAG-CATATTCGCGT
1 TGCGATAGTCAT-TTCGCGT
2725 TGCGAT
1 TGCGAT
2731 TTCCGCGTTG
Statistics
Matches: 56, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
18 4 0.07
19 33 0.59
20 19 0.34
ACGTcount: A:0.19, C:0.22, G:0.24, T:0.35
Consensus pattern (19 bp):
TGCGATAGTCATTTCGCGT
Found at i:2709 original size:39 final size:38
Alignment explanation
Indices: 2642--2730 Score: 119
Period size: 39 Copynumber: 2.3 Consensus size: 38
2632 AACGAGTGAA
*
2642 TCGCAATGCGATAGTCATTTCGCGTTGCGATAGTCA-AT
1 TCGCATTGCGATAGTCATTTCGCGTTGCGATAG-CATAT
2680 TCCGCATTGCGATAGTCATTTC-CGTTTGCGATAGCATAT
1 T-CGCATTGCGATAGTCATTTCGCG-TTGCGATAGCATAT
*
2719 TCGCGTTGCGAT
1 TCGCATTGCGAT
2731 TTCCGCGTTG
Statistics
Matches: 46, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
38 15 0.33
39 31 0.67
ACGTcount: A:0.20, C:0.22, G:0.24, T:0.34
Consensus pattern (38 bp):
TCGCATTGCGATAGTCATTTCGCGTTGCGATAGCATAT
Found at i:6032 original size:20 final size:20
Alignment explanation
Indices: 6009--6165 Score: 119
Period size: 20 Copynumber: 7.8 Consensus size: 20
5999 TTGCGATAGT
* *
6009 CAGAATCTCGTTGCGATTTA
1 CAGAATCGCATTGCGATTTA
*
6029 CAGATTCGCATTGCGATTTA
1 CAGAATCGCATTGCGATTTA
*
6049 C-GTATTCGCATTGCGATTTA
1 CAG-AATCGCATTGCGATTTA
*
6069 C-GTATTCGCATTGCGATTTA
1 CAG-AATCGCATTGCGATTTA
*
6089 C-GTGATCGCATTGCGATTTA
1 CAG-AATCGCATTGCGATTTA
* *
6109 C-GTAATCGCATTGCAATTTTC
1 CAG-AATCGCATTGCGA-TTTA
*
6130 CA-AATTCGCGTTGCGATTTA
1 CAGAA-TCGCATTGCGATTTA
*
6150 C-GTATTCGCATTGCGA
1 CAG-AATCGCATTGCGA
6166 ATTAGGAAAA
Statistics
Matches: 118, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
19 1 0.01
20 103 0.87
21 14 0.12
ACGTcount: A:0.22, C:0.21, G:0.20, T:0.36
Consensus pattern (20 bp):
CAGAATCGCATTGCGATTTA
Found at i:6063 original size:40 final size:40
Alignment explanation
Indices: 6019--6165 Score: 199
Period size: 40 Copynumber: 3.6 Consensus size: 40
6009 CAGAATCTCG
6019 TTGCGATTTACAG-ATTCGCATTGCGATTTACGTATTCGCA
1 TTGCGATTTAC-GTATTCGCATTGCGATTTACGTATTCGCA
6059 TTGCGATTTACGTATTCGCATTGCGATTTACGTGA-TCGCA
1 TTGCGATTTACGTATTCGCATTGCGATTTACGT-ATTCGCA
* * * ** *
6099 TTGCGATTTACGTAATCGCATTGCAATTTTCCAAATTCGCG
1 TTGCGATTTACGTATTCGCATTGCGA-TTTACGTATTCGCA
6140 TTGCGATTTACGTATTCGCATTGCGA
1 TTGCGATTTACGTATTCGCATTGCGA
6166 ATTAGGAAAA
Statistics
Matches: 95, Mismatches: 8, Indels: 7
0.86 0.07 0.06
Matches are distributed among these distances:
39 1 0.01
40 61 0.64
41 33 0.35
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.37
Consensus pattern (40 bp):
TTGCGATTTACGTATTCGCATTGCGATTTACGTATTCGCA
Found at i:6083 original size:60 final size:60
Alignment explanation
Indices: 6019--6165 Score: 190
Period size: 60 Copynumber: 2.4 Consensus size: 60
6009 CAGAATCTCG
* * **
6019 TTGCGATTTACAGATTCGCATTGCGATTTACGTATTCGCATTGCGA-TTTACGTATTCGCA
1 TTGCGATTTAC-GATTCGCATTGCGATTTACGTAATCGCATTGCAATTTTACAAATTCGCA
* *
6079 TTGCGATTTACG-TGATCGCATTGCGATTTACGTAATCGCATTGCAATTTTCCAAATTCGCG
1 TTGCGATTTACGAT--TCGCATTGCGATTTACGTAATCGCATTGCAATTTTACAAATTCGCA
6140 TTGCGATTTACGTATTCGCATTGCGA
1 TTGCGATTTACG-ATTCGCATTGCGA
6166 ATTAGGAAAA
Statistics
Matches: 76, Mismatches: 6, Indels: 9
0.84 0.07 0.10
Matches are distributed among these distances:
58 1 0.01
59 1 0.01
60 40 0.53
61 33 0.43
63 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.37
Consensus pattern (60 bp):
TTGCGATTTACGATTCGCATTGCGATTTACGTAATCGCATTGCAATTTTACAAATTCGCA
Found at i:6187 original size:21 final size:21
Alignment explanation
Indices: 6163--6202 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
6153 ATTCGCATTG
6163 CGAATTAGGAAAATCGCAACA
1 CGAATTAGGAAAATCGCAACA
* *
6184 CGAATTTGGGAAATCGCAA
1 CGAATTAGGAAAATCGCAA
6203 TGCGATAGTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.42, C:0.17, G:0.23, T:0.17
Consensus pattern (21 bp):
CGAATTAGGAAAATCGCAACA
Found at i:6605 original size:38 final size:37
Alignment explanation
Indices: 6563--6742 Score: 138
Period size: 38 Copynumber: 4.9 Consensus size: 37
6553 AGGATAATAT
*
6563 TATATTATTCAAGGATTTATATTCAATTTAAATTA-AAA
1 TATATTATTCAAGAATTTATATTCAA-TTAAA-TAGAAA
* * *
6601 TATATTATTTACGAATTTATATTCAATTGAATAGAAA
1 TATATTATTCAAGAATTTATATTCAATTAAATAGAAA
* * * *
6638 TATATTATTTATA-AATTTAT-TT-GATTAAGTACAAA
1 TATATTATTCA-AGAATTTATATTCAATTAAATAGAAA
* * * * *
6673 TATATTATTTATGAATTCATATTTAATTAAAATACAAA
1 TATATTATTCAAGAATTTATATTCAATT-AAATAGAAA
* *
6711 TATATTATT-AGGAA-TTATATTCGATTAGAATA
1 TATATTATTCAAGAATTTATATTCAATTA-AATA
6743 CGATATTGTA
Statistics
Matches: 118, Mismatches: 17, Indels: 16
0.78 0.11 0.11
Matches are distributed among these distances:
35 27 0.23
36 19 0.16
37 32 0.27
38 40 0.34
ACGTcount: A:0.44, C:0.04, G:0.07, T:0.45
Consensus pattern (37 bp):
TATATTATTCAAGAATTTATATTCAATTAAATAGAAA
Found at i:6681 original size:35 final size:35
Alignment explanation
Indices: 6563--6719 Score: 145
Period size: 38 Copynumber: 4.3 Consensus size: 35
6553 AGGATAATAT
* * *
6563 TATATTATTCAAGGATTTATATTCAATTTAAATTA-AAA
1 TATATTATTTATGAATTTAT-TT-AA-TTAAA-TACAAA
* * *
6601 TATATTATTTACGAATTTATATTCAATTGAATAGAAA
1 TATATTATTTATGAATTTAT-TT-AATTAAATACAAA
* * *
6638 TATATTATTTATAAATTTATTTGATTAAGTACAAA
1 TATATTATTTATGAATTTATTTAATTAAATACAAA
6673 TATATTATTTATGAATTCATATTTAATTAAAATACAAA
1 TATATTATTTATGAATT--TATTTAATT-AAATACAAA
6711 TATATTATT
1 TATATTATT
6720 AGGAATTATA
Statistics
Matches: 102, Mismatches: 13, Indels: 8
0.83 0.11 0.07
Matches are distributed among these distances:
35 25 0.25
36 4 0.04
37 33 0.32
38 40 0.39
ACGTcount: A:0.44, C:0.04, G:0.05, T:0.46
Consensus pattern (35 bp):
TATATTATTTATGAATTTATTTAATTAAATACAAA
Found at i:7210 original size:7 final size:7
Alignment explanation
Indices: 7198--7224 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
7188 GTTTTCCTTC
7198 AATTCTG
1 AATTCTG
7205 AATTCTG
1 AATTCTG
7212 AATTCTG
1 AATTCTG
7219 AATTCT
1 AATTCT
7225 AAAATCTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.30, C:0.15, G:0.11, T:0.44
Consensus pattern (7 bp):
AATTCTG
Found at i:9901 original size:17 final size:17
Alignment explanation
Indices: 9879--9937 Score: 50
Period size: 17 Copynumber: 3.4 Consensus size: 17
9869 CAAATTGGAA
9879 TATATTATTTATAAATT
1 TATATTATTTATAAATT
* *
9896 TATA-T-TTGATTGAATT
1 TATATTATTTA-TAAATT
9912 ATGAATATTATTTATAAATT
1 -T--ATATTATTTATAAATT
9932 TATATT
1 TATATT
9938 TTATTAAATA
Statistics
Matches: 32, Mismatches: 4, Indels: 12
0.67 0.08 0.25
Matches are distributed among these distances:
15 3 0.09
16 6 0.19
17 10 0.31
19 4 0.12
20 6 0.19
21 3 0.09
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.56
Consensus pattern (17 bp):
TATATTATTTATAAATT
Found at i:9956 original size:36 final size:37
Alignment explanation
Indices: 9877--9972 Score: 117
Period size: 36 Copynumber: 2.7 Consensus size: 37
9867 TTCAAATTGG
* *
9877 AATATATTATTTATAAATTTATATTTGATTGAATTAT
1 AATATATTATTTATAAATTTATATTTGATTGAAATAA
* *
9914 GA-ATATTATTTATAAATTTATATTTTATT-AAATAA
1 AATATATTATTTATAAATTTATATTTGATTGAAATAA
* *
9949 AATATATTA-TGATGAATTTATATT
1 AATATATTATTTATAAATTTATATT
9973 CAATTAAAAT
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
35 18 0.35
36 32 0.63
37 1 0.02
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (37 bp):
AATATATTATTTATAAATTTATATTTGATTGAAATAA
Found at i:10540 original size:27 final size:27
Alignment explanation
Indices: 10489--10547 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
10479 AGTAAACTTA
*
10489 TTTTTTATCTTTAATTTATAAAATATT
1 TTTTTTATCTTTAATTTATAAAATAAT
*
10516 TTTTTCTATCTTTAATTT-TATAATAAT
1 TTTTT-TATCTTTAATTTATAAAATAAT
10543 TTTTT
1 TTTTT
10548 ATTATATATT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 17 0.59
28 12 0.41
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.66
Consensus pattern (27 bp):
TTTTTTATCTTTAATTTATAAAATAAT
Found at i:10549 original size:13 final size:14
Alignment explanation
Indices: 10531--10563 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
10521 CTATCTTTAA
10531 TTTTATAATA-ATT
1 TTTTATAATATATT
*
10544 TTTTATTATATATT
1 TTTTATAATATATT
10558 TTTTAT
1 TTTTAT
10564 TATTTATTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 9 0.50
14 9 0.50
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (14 bp):
TTTTATAATATATT
Found at i:10560 original size:14 final size:14
Alignment explanation
Indices: 10531--10571 Score: 57
Period size: 14 Copynumber: 3.0 Consensus size: 14
10521 CTATCTTTAA
*
10531 TTTTATAATA-ATT
1 TTTTATTATATATT
10544 TTTTATTATATATT
1 TTTTATTATATATT
*
10558 TTTTATTATTTATT
1 TTTTATTATATATT
10572 CTTGAATTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
13 9 0.36
14 16 0.64
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (14 bp):
TTTTATTATATATT
Found at i:17934 original size:16 final size:16
Alignment explanation
Indices: 17913--17955 Score: 86
Period size: 16 Copynumber: 2.7 Consensus size: 16
17903 AAAAAAAATT
17913 TGTTCGTTTATGTTCA
1 TGTTCGTTTATGTTCA
17929 TGTTCGTTTATGTTCA
1 TGTTCGTTTATGTTCA
17945 TGTTCGTTTAT
1 TGTTCGTTTAT
17956 TTATTAAATG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.12, C:0.12, G:0.19, T:0.58
Consensus pattern (16 bp):
TGTTCGTTTATGTTCA
Found at i:21550 original size:227 final size:226
Alignment explanation
Indices: 21121--21567 Score: 747
Period size: 227 Copynumber: 2.0 Consensus size: 226
21111 ATAAATTATC
* * *
21121 TATCCTTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAATATATTTATTATTATCTTTAGT
1 TATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAACATATTTATTATTATATTTAGT
* **
21186 TAATATTGTTAAATAATAAGTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTT
66 TAATATTGTTAAATAATAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAA-TAAT
21251 TGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAATTTG
130 TGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAATTTG
21316 AAACATAAATTACATAACTTTCAAAAAAGTATA
195 AAACATAAATTACATAACTTT-AAAAAAGTATA
*
21349 TATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTTGAAAACATATTTATTATTATATTTGG
1 TATCATTTTTATAAAAGTGTCCATACTTATTTCACTG-TGAAAACATATTTATTATTATATTTAG
*
21414 TTAATATTGTTAAAT-TTAAATGCTAAATAATATTTTATAAAATATCAAAACAATCAAATAA-AA
65 TTAATATTGTTAAATAATAAAT-CTAAATAATATTTTATAAAATATCAAAACAATCAAATAATAA
*
21477 TTGTGTAAATTAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAATAAA-T
129 TTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAA-AAATT
21541 TGAAACATAAATTACATAACTTTAAAA
193 TGAAACATAAATTACATAACTTTAAAA
21568 GCAGTTTTAA
Statistics
Matches: 207, Mismatches: 9, Indels: 8
0.92 0.04 0.04
Matches are distributed among these distances:
226 4 0.02
227 82 0.40
228 43 0.21
229 78 0.38
ACGTcount: A:0.45, C:0.08, G:0.08, T:0.39
Consensus pattern (226 bp):
TATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAACATATTTATTATTATATTTAGT
TAATATTGTTAAATAATAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATAATT
GTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAATTTGA
AACATAAATTACATAACTTTAAAAAAGTATA
Found at i:21656 original size:20 final size:19
Alignment explanation
Indices: 21633--21678 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 19
21623 CGATATACCA
21633 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
21653 GGTAACAAAATGATAAAACC
1 GGTAA-AAAATGATAAAACC
21673 GGTAAA
1 GGTAAA
21679 TTTAAAAGTG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 1 0.04
20 21 0.84
21 3 0.12
ACGTcount: A:0.54, C:0.11, G:0.17, T:0.17
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:21822 original size:20 final size:19
Alignment explanation
Indices: 21799--21845 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
21789 CGATATAACA
*
21799 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAAAC
*
21819 GGTATCAAAATGATAAAAAC
1 GGTA-AAAAATGATAAAAAC
21839 GGTAAAA
1 GGTAAAA
21846 TGATACCGGA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 2 0.09
20 18 0.78
21 3 0.13
ACGTcount: A:0.55, C:0.09, G:0.17, T:0.19
Consensus pattern (19 bp):
GGTAAAAAATGATAAAAAC
Found at i:24183 original size:33 final size:33
Alignment explanation
Indices: 24141--24206 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
24131 AAATAGATGG
*
24141 AGTGGTGAAAGAAGTAGAGGTGTTGAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
***
24174 AGTGGTGAAAGAAGTTTCGGTGTTAAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
24207 TATTAAGATG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.29, C:0.02, G:0.45, T:0.24
Consensus pattern (33 bp):
AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
Found at i:26030 original size:19 final size:19
Alignment explanation
Indices: 25986--26029 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
25976 AATGTCGAGT
*
25986 TAATTTTGTATAATATTTA
1 TAATTTTGTATAAGATTTA
*
26005 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
26024 T-ATTTT
1 TAATTTT
26030 TTTATGTGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 5 0.22
19 18 0.78
ACGTcount: A:0.32, C:0.02, G:0.07, T:0.59
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:26507 original size:199 final size:199
Alignment explanation
Indices: 26112--27729 Score: 3010
Period size: 199 Copynumber: 8.1 Consensus size: 199
26102 TTAAGGGTCA
*
26112 TGTCGATACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATT-AAAACAAGGTGCATC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
26176 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCC-AAAGTATAATG
66 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
*
26240 TAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
131 TAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
26305 AATG
196 AATG
*
26309 TGTCGACACTAATATAGTTTGTGTGGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
26374 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
66 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
*
26439 TAATCTGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
131 TAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
26504 AATG
196 AATG
*
26508 TGTCGATACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
26573 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
66 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
*
26638 TAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
131 TAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
26703 AATG
196 AATG
26707 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
26772 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
66 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
*
26837 TAATATGTAATTTTTCAAGCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
131 TAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
26902 AATG
196 AATG
* *
26906 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTGCACC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
*
26971 CATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
66 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
27036 TAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
131 TAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
27101 AATG
196 AATG
*
27105 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCCAGAATGAATTAAAAACAAGGTGCAA
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTT-CCAGAATGAATTAAAAACAAGGTGCAT
*
27170 CCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
65 CAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
*
27235 GTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAA
130 GTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAA
27300 TAATG
195 TAATG
* *
27305 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTGCACC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
27370 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
66 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
27435 TAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
131 TAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
27500 AATG
196 AATG
* *
27504 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTGCACC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
* *
27569 CATAAAGTGTCGATCCATATATAAAACGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
66 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
* *
27634 TAATATGTAATTTTTCAATCTAACCGGTACAATAATACCGGTTTTATGAGAGAATATGTCTAAAT
131 TAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
27699 AATG
196 AATG
27703 TGTCGACACTAATAT--TTTGTGTCGATA
1 TGTCGACACTAATATAGTTTGTGTCGATA
27730 CTAATTTAAA
Statistics
Matches: 1392, Mismatches: 26, Indels: 6
0.98 0.02 0.00
Matches are distributed among these distances:
197 59 0.04
198 68 0.05
199 1069 0.77
200 196 0.14
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.32
Consensus pattern (199 bp):
TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
TAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
AATG
Found at i:27448 original size:598 final size:597
Alignment explanation
Indices: 26112--27729 Score: 3055
Period size: 598 Copynumber: 2.7 Consensus size: 597
26102 TTAAGGGTCA
*
26112 TGTCGATACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATT-AAAACAAGGTGCATC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
26176 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCC-AAAGTATAATG
66 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
*
26240 TAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
131 TAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
* *
26305 AATGTGTCGACACTAATATAGTTTGTGTGGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTG
196 AATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTG
* *
26370 CATCAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTAT
261 CACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTAT
*
26435 AATGTAATCTGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCT
326 AATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCT
*
26500 AAATAATGTGTCGATACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAA
391 AAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAA
*
26565 GGTGCATCAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAA
456 GGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAA
26630 GTATAATGTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAA
521 GTATAATGTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAA
26695 GTCTAAATAATG
586 GTCTAAATAATG
26707 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
26772 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
66 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
*
26837 TAATATGTAATTTTTCAAGCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
131 TAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
26902 AATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTG
196 AATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTG
26967 CACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTAT
261 CACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTAT
27032 AATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCT
326 AATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCT
27097 AAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCCAGAATGAATTAAAAACA
391 AAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTT-CCAGAATGAATTAAAAACA
*
27162 AGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAA
455 AGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAA
27227 AGTATAATGTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATA
520 AGTATAATGTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATA
27292 AGTCTAAATAATG
585 AGTCTAAATAATG
* *
27305 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTGCACC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
27370 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
66 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
27435 TAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
131 TAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
27500 AATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTG
196 AATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTG
*
27565 CACCCATAAAGTGTCGATCCATATATAAAACGTGTCGATCCCAAAATCATCGAACCCAAAAGTAT
261 CACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTAT
* *
27630 AATGTAATATGTAATTTTTCAATCTAACCGGTACAATAATACCGGTTTTATGAGAGAATATGTCT
326 AATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCT
27695 AAATAATGTGTCGACACTAATAT--TTTGTGTCGATA
391 AAATAATGTGTCGACACTAATATAGTTTGTGTCGATA
27730 CTAATTTAAA
Statistics
Matches: 1003, Mismatches: 17, Indels: 5
0.98 0.02 0.00
Matches are distributed among these distances:
595 48 0.05
596 80 0.08
597 308 0.31
598 567 0.57
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.32
Consensus pattern (597 bp):
TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
TAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
AATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTG
CACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTAT
AATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCT
AAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAA
GGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAA
GTATAATGTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAA
GTCTAAATAATG
Found at i:29209 original size:18 final size:18
Alignment explanation
Indices: 29186--29253 Score: 55
Period size: 21 Copynumber: 3.4 Consensus size: 18
29176 ATCAGTCGCA
29186 GAAGATGAAGCTGACGAT
1 GAAGATGAAGCTGACGAT
* *
29204 GAAGATGACGATGATGATGAT
1 GAAGATGA--A-GCTGACGAT
*
29225 GATGACGATGAAGCTGGCGAT
1 GA--A-GATGAAGCTGACGAT
29246 GAAGATGA
1 GAAGATGA
29254 TGACGATGAT
Statistics
Matches: 39, Mismatches: 5, Indels: 12
0.70 0.09 0.21
Matches are distributed among these distances:
18 13 0.33
19 1 0.03
20 1 0.03
21 17 0.44
22 1 0.03
23 1 0.03
24 5 0.13
ACGTcount: A:0.37, C:0.09, G:0.35, T:0.19
Consensus pattern (18 bp):
GAAGATGAAGCTGACGAT
Found at i:29210 original size:6 final size:6
Alignment explanation
Indices: 29186--29283 Score: 70
Period size: 6 Copynumber: 16.3 Consensus size: 6
29176 ATCAGTCGCA
* * * * * *
29186 GAAGAT GAAGCT GACGAT GAAGAT GACGAT GATGAT GATGAT GACGAT
1 GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT
* ** * * * * *
29234 GAAGCT GGCGAT GAAGAT GATGAC GATGAT GATGAT GATGAT GAAGAT
1 GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT
29282 GA
1 GA
29284 TGATCCAAAC
Statistics
Matches: 74, Mismatches: 18, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
6 74 1.00
ACGTcount: A:0.37, C:0.07, G:0.35, T:0.21
Consensus pattern (6 bp):
GAAGAT
Found at i:29221 original size:3 final size:3
Alignment explanation
Indices: 29201--29287 Score: 84
Period size: 3 Copynumber: 29.0 Consensus size: 3
29191 TGAAGCTGAC
* * * * * ** *
29201 GAT GAA GAT GAC GAT GAT GAT GAT GAT GAC GAT GAA GCT GGC GAT GAA
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
* *
29249 GAT GAT GAC GAT GAT GAT GAT GAT GAT GAA GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
29288 CCAAACAAGT
Statistics
Matches: 65, Mismatches: 19, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
3 65 1.00
ACGTcount: A:0.36, C:0.06, G:0.34, T:0.24
Consensus pattern (3 bp):
GAT
Found at i:29236 original size:42 final size:42
Alignment explanation
Indices: 29189--29279 Score: 146
Period size: 42 Copynumber: 2.2 Consensus size: 42
29179 AGTCGCAGAA
*
29189 GATGAAGCTGACGATGAAGATGACGATGATGATGATGATGAC
1 GATGAAGCTGACGATGAAGATGACGACGATGATGATGATGAC
* * *
29231 GATGAAGCTGGCGATGAAGATGATGACGATGATGATGATGAT
1 GATGAAGCTGACGATGAAGATGACGACGATGATGATGATGAC
29273 GATGAAG
1 GATGAAG
29280 ATGATGATCC
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.35, C:0.08, G:0.35, T:0.22
Consensus pattern (42 bp):
GATGAAGCTGACGATGAAGATGACGACGATGATGATGATGAC
Found at i:29287 original size:18 final size:18
Alignment explanation
Indices: 29186--29283 Score: 88
Period size: 18 Copynumber: 5.4 Consensus size: 18
29176 ATCAGTCGCA
* *
29186 GAAGATGAAGCTGACGAT
1 GAAGATGAAGATGATGAT
*
29204 GAAGATGACGATGATGAT
1 GAAGATGAAGATGATGAT
* * * *
29222 GATGATGACGATGAAGCT
1 GAAGATGAAGATGATGAT
** *
29240 GGCGATGAAGATGATGAC
1 GAAGATGAAGATGATGAT
* *
29258 GATGATGATGATGATGAT
1 GAAGATGAAGATGATGAT
29276 GAAGATGA
1 GAAGATGA
29284 TGATCCAAAC
Statistics
Matches: 63, Mismatches: 17, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 63 1.00
ACGTcount: A:0.37, C:0.07, G:0.35, T:0.21
Consensus pattern (18 bp):
GAAGATGAAGATGATGAT
Found at i:31070 original size:184 final size:184
Alignment explanation
Indices: 30761--31604 Score: 1602
Period size: 184 Copynumber: 4.6 Consensus size: 184
30751 TATTATAAAA
30761 AATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATAGGTCTACAAC
1 AATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATAGGTCTACAAC
*
30826 CTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAAAATGTGTTGA
66 CTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAAAATGTGTCGA
30891 TACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATAATTATAATGT
131 TACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATAATTATAATGT
* * * *
30945 AATAGATAATTTTATAATATAACCGGTATAAATATACCGGTTTTATGAGCCAATAGGTCTACAAC
1 AATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATAGGTCTACAAC
31010 CTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAAAATGTGTCGA
66 CTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAAAATGTGTCGA
31075 TACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATAATTATAATGT
131 TACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATAATTATAATGT
31129 AATAGATAATTTTGTAATATAACCGGTAT-AATATACCGGTCTTATGCGCGAATAGGTCTACAAC
1 AATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATAGGTCTACAAC
31193 CTATATCGACAC-TTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAAAATGTGTCGA
66 CTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAAAATGTGTCGA
31257 TACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATAATTATAATGT
131 TACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATAATTATAATGT
31311 AATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATAGGTCTACAAC
1 AATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATAGGTCTACAAC
31376 CTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAAAATGTGTCGA
66 CTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAAAATGTGTCGA
31441 TACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATAATTATAATGT
131 TACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATAATTATAATGT
* *
31495 AATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAAC
1 AATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATAGGTCTACAAC
*
31560 CTATATCGACACTTTATAATATTGTGTCGGTACTTTATGTCCATA
66 CTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATA
31605 CCATTTAAAA
Statistics
Matches: 646, Mismatches: 12, Indels: 4
0.98 0.02 0.01
Matches are distributed among these distances:
182 135 0.21
183 91 0.14
184 420 0.65
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34
Consensus pattern (184 bp):
AATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATAGGTCTACAAC
CTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAAAATGTGTCGA
TACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATAATTATAATGT
Found at i:31425 original size:366 final size:367
Alignment explanation
Indices: 30761--31604 Score: 1600
Period size: 366 Copynumber: 2.3 Consensus size: 367
30751 TATTATAAAA
30761 AATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATAGGTCTACAAC
1 AATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATAGGTCTACAAC
*
30826 CTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAAAATGTGTTGA
66 CTATATCGACAC-TTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAAAATGTGTCGA
30891 TACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATAATTATAATGTAATAGATAATT
130 TACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATAATTATAATGTAATAGATAATT
*
30956 TTATAATATAACCGGTATAAATATACCGGTTTTATGAGCCAATAGGTCTACAACCTATATCGACA
195 TTATAATATAACCGGTATAAATATACCGGTCTTATGAGCCAATAGGTCTACAACCTATATCGACA
31021 CTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAAAATGTGTCGATACGATTTAAA
260 CTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAAAATGTGTCGATACGATTTAAA
31086 AAAGTGTCGACATTTTACACATCGGAACCCATAATTATAATGT
325 AAAGTGTCGACATTTTACACATCGGAACCCATAATTATAATGT
31129 AATAGATAATTTTGTAATATAACCGGTAT-AATATACCGGTCTTATGCGCGAATAGGTCTACAAC
1 AATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATAGGTCTACAAC
31193 CTATATCGACACTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAAAATGTGTCGAT
66 CTATATCGACACTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAAAATGTGTCGAT
31258 ACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATAATTATAATGTAATAGATAATTT
131 ACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATAATTATAATGTAATAGATAATTT
* * *
31323 TGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATAGGTCTACAACCTATATCGACAC
196 TATAATATAACCGGTATAAATATACCGGTCTTATGAGCCAATAGGTCTACAACCTATATCGACAC
31388 TTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAAAATGTGTCGATACGATTTAAAA
261 TTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAAAATGTGTCGATACGATTTAAAA
31453 AAGTGTCGACATTTTACACATCGGAACCCATAATTATAATGT
326 AAGTGTCGACATTTTACACATCGGAACCCATAATTATAATGT
* *
31495 AATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAAC
1 AATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATAGGTCTACAAC
31560 CTATATCGACACTTTATAATATTGTGTCGGTACTTTATGTCCATA
66 CTATATCGACACTTT-TAATATTGTGTCGGTACTTTATGTCCATA
31605 CCATTTAAAA
Statistics
Matches: 467, Mismatches: 7, Indels: 4
0.98 0.01 0.01
Matches are distributed among these distances:
366 314 0.67
367 95 0.20
368 58 0.12
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34
Consensus pattern (367 bp):
AATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATAGGTCTACAAC
CTATATCGACACTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAAAATGTGTCGAT
ACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATAATTATAATGTAATAGATAATTT
TATAATATAACCGGTATAAATATACCGGTCTTATGAGCCAATAGGTCTACAACCTATATCGACAC
TTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAAAATGTGTCGATACGATTTAAAA
AAGTGTCGACATTTTACACATCGGAACCCATAATTATAATGT
Found at i:34188 original size:23 final size:23
Alignment explanation
Indices: 34157--34220 Score: 92
Period size: 23 Copynumber: 2.8 Consensus size: 23
34147 ATAGGTAAAC
*
34157 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGCCCTT
* **
34180 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCCCTT
34203 ATATAATGTAATAGGTAG
1 ATATAATGTAATAGGTAG
34221 TGGTTATATT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.36, C:0.06, G:0.20, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCCCTT
Found at i:34227 original size:23 final size:23
Alignment explanation
Indices: 34157--34229 Score: 85
Period size: 23 Copynumber: 3.2 Consensus size: 23
34147 ATAGGTAAAC
* **
34157 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGTGCTT
*
34180 ATATAATGTAATAGGTA-TCGTTT
1 ATATAATGTAATAGGTAGT-GCTT
*
34203 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGTGCTT
34226 ATAT
1 ATAT
34230 TGTAAAGTGT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
23 42 0.98
24 1 0.02
ACGTcount: A:0.34, C:0.05, G:0.21, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGTGCTT
Found at i:34613 original size:23 final size:23
Alignment explanation
Indices: 34582--34644 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
34572 ATAGGTAAAC
*
34582 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGCCCTT
* **
34605 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCCCTT
34628 ATATAATGTAATAGGTA
1 ATATAATGTAATAGGTA
34645 ATGGTTATAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.37, C:0.06, G:0.19, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCCCTT
Found at i:34652 original size:23 final size:23
Alignment explanation
Indices: 34582--34654 Score: 85
Period size: 23 Copynumber: 3.2 Consensus size: 23
34572 ATAGGTAAAC
* * **
34582 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTATCGGTT
*
34605 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTATCGGTT
34628 ATATAATGTAATAGGTAAT-GGTT
1 ATATAATGTAATAGGT-ATCGGTT
34651 ATAT
1 ATAT
34655 TGTAAAGTGT
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
23 42 0.95
24 2 0.05
ACGTcount: A:0.36, C:0.05, G:0.19, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTATCGGTT
Found at i:34854 original size:29 final size:29
Alignment explanation
Indices: 34798--34862 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 29
34788 GTTACGGTAT
* * *
34798 ATATTTTATTAAATTAAAAATTCTAAATA
1 ATATTTTATAAAATAAAAAAATCTAAATA
34827 ATATTTTATAAAATAAAAACAATC-AAATA
1 ATATTTTATAAAATAAAAA-AATCTAAATA
*
34856 ATTTTTT
1 ATATTTT
34863 GTGCAAATGA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 28 0.90
30 3 0.10
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.43
Consensus pattern (29 bp):
ATATTTTATAAAATAAAAAAATCTAAATA
Found at i:35035 original size:424 final size:431
Alignment explanation
Indices: 34058--38045 Score: 7544
Period size: 426 Copynumber: 9.4 Consensus size: 431
34048 AATTCGCAGT
34058 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
1 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
*
34123 AAAAGTATGGACACTTTCAATAAAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
66 AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
*
34188 TAATAGGTATCGTTTATATAATGTAATAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTAT
131 TAATAGGTATCGTTTATATAATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTAT
34253 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTT
196 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTT
34318 -AGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATT
261 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATT
34382 ATTAAATTAAAAATTCTAAATAATATTTTAT-AAATATAAAAACAATCAAATAATTTTTTGTGCA
326 ATTAAATTAAAAATTCTAAATAATATTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCA
34446 AATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
391 AATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
34487 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTAT-
1 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
34551 -AAAGTATGG--ACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
66 AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
34613 TAATAGGTATCGTTTATATAATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCC-TTTTAT
131 TAATAGGTATCGTTTATATAATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTAT
34677 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTT
196 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTT
34742 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTA-TTTTTACGTTACGGTATATATT-TT
261 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATT
34805 ATTAAATTAAAAATTCTAAATAATATTTTAT-AAA-ATAAAAACAATCAAATAATTTTTTGTGCA
326 ATTAAATTAAAAATTCTAAATAATATTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCA
34868 AATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
391 AATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
34909 AC-CTGTT-AAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
1 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
34972 AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
66 AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
35037 TAATAGGTATCGTTTATATAATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTAT
131 TAATAGGTATCGTTTATATAATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTAT
35102 AAAAGTGTCCATACTTTTTTCA-TGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTT
196 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTT
35166 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATT
261 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATT
35231 ATTAAATTAAAAATTCTAAATAATATTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCA
326 ATTAAATTAAAAATTCTAAATAATATTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCA
35296 AATGAAATTATTAAATCAATA-TGTAGGTGGAAAACATGAA
391 AATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
35336 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAAGTATCGATCCTTTTTAT
1 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTT-AAAAAAAGTATCGATCCTTTTTAT
35401 AAAAAGTATGGACACTTTCAATAT-ATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAAT
65 AAAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAAT
35465 GTAATAGGTATCGTTTATAT-A---AATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTA
130 GTAATAGGTATCGTTTATATAATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTA
35526 TAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTT
195 TAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTT
35591 TAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTAT
260 TAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTAT
*
35656 TATTAAATTAAAAATTCTAAATAATATTTTATAAAATATAAAAACAATCAAATAATATTTTGTGC
325 TATTAAATTAAAAATTCTAAATAATATTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGC
35721 AAATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
390 AAATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
35763 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
1 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
35828 AAAAGTATGGACACTTTCAATATAATAGGT-AACATATGATGTAATA-GTAGCCCTTATATAATG
66 AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
*
35891 TAATAGGTATCG-TTATATAATGTAATAGGT-ATTG-T-TATTGTAAAGTGTCTATCCTTTTTAT
131 TAATAGGTATCGTTTATATAATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTAT
35952 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAA-TTAAGG-TATCTTTTGAGTGAGTTTT
196 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTT
36015 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGG--TATA-TATT
261 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATT
36077 ATTAAATTAAAAATTCTAAATAATATTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCA
326 ATTAAATTAAAAATTCTAAATAATATTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCA
36142 AATGAAATTA-TAAATCAATATTGTAGGTGG-AAACATGAA
391 AATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
36181 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTT-AAAAAAGTATCGATCCTTTTTATA
1 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
36245 AAAAGTATGGACACTTTCAATATAATAGGT--ACATATGATGTAATAGGTAGCCC-T-TATAATG
66 AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
36306 TAATAGGTATCG-TTATATAATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTAT
131 TAATAGGTATCGTTTATATAATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTAT
*
36370 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATCTAAGGTTATCTTTTGAGTGAGTTTT
196 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTT
36435 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATT
261 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATT
36500 ATTAAATTAAAAATTCTAAATAATA-TTTATAAAATAT-AAAACAATCAAATAATTTTTTGTGCA
326 ATTAAATTAAAAATTCTAAATAATATTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCA
36563 AATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
391 AATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
36604 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
1 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
36669 AAAAGTATGGACACTTTC-A-ATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATA-AATG
66 AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
36731 TAATAGGTATCGTTTATATAATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTAT
131 TAATAGGTATCGTTTATATAATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTAT
36796 AAAAGTGTCCATAC-TTTTTCACTGTGGAAAACA-TAATTTAAGGTTATCTTTTGAGTGAGTTTT
196 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTT
36859 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATT
261 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATT
36924 ATTAAATTAAAAATTCTAAATAATATTTTAT-AAATATAAAAACAATCAAATAATTTTTTGTGCA
326 ATTAAATTAAAAATTCTAAATAATATTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCA
36988 AATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
391 AATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
37029 ACACTGTTAAAAAAATTGAAACATAAATTACATAA-TTTTAAAAAAAGTATCGATCCTTTTTATA
1 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
37093 AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
66 AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
37158 TAATAGGTATCGTTTATAT-ATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTAT
131 TAATAGGTATCGTTTATATAATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTAT
37222 AAAAGTGTCCATAC-TTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTT
196 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTT
37286 AAGATATTAATTTAGTAA-TATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATT
261 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATT
37350 ATTAAATTAAAAATTCTAAATAATATTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCA
326 ATTAAATTAAAAATTCTAAATAATATTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCA
37415 AATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
391 AATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
37456 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTT-AAAAAAGTATCGATCCTTTTTATA
1 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
37520 AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
66 AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
37585 TAATAGGTATCGTTTATATAATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTAT
131 TAATAGGTATCGTTTATATAATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTAT
37650 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTT
196 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTT
37715 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATT
261 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATT
37780 ATTAAATTAAAAATTCTAAATAATA-TTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCA
326 ATTAAATTAAAAATTCTAAATAATATTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCA
37844 AATGAAATTATTAAATCAATATTGTAGGTGGAAAACATG-A
391 AATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
37884 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
1 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
37949 AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
66 AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
38014 TAATAGGTATCGTTTATATAATGTAATAGGTA
131 TAATAGGTATCGTTTATATAATGTAATAGGTA
38046 TCTATCTCGC
Statistics
Matches: 3502, Mismatches: 8, Indels: 98
0.97 0.00 0.03
Matches are distributed among these distances:
415 37 0.01
416 19 0.01
417 62 0.02
418 113 0.03
419 25 0.01
420 206 0.06
421 45 0.01
422 126 0.04
423 188 0.05
424 534 0.15
425 498 0.14
426 552 0.16
427 389 0.11
428 167 0.05
429 422 0.12
430 119 0.03
ACGTcount: A:0.40, C:0.08, G:0.13, T:0.39
Consensus pattern (431 bp):
ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
TAATAGGTATCGTTTATATAATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTAT
AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTT
AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATT
ATTAAATTAAAAATTCTAAATAATATTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCA
AATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
Found at i:35037 original size:23 final size:23
Alignment explanation
Indices: 35006--35068 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
34996 ATAGGTAAAC
*
35006 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGCCCTT
* **
35029 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCCCTT
35052 ATATAATGTAATAGGTA
1 ATATAATGTAATAGGTA
35069 ATGGTTATAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.37, C:0.06, G:0.19, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCCCTT
Found at i:35076 original size:23 final size:23
Alignment explanation
Indices: 35006--35078 Score: 85
Period size: 23 Copynumber: 3.2 Consensus size: 23
34996 ATAGGTAAAC
* * **
35006 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTATCGGTT
*
35029 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTATCGGTT
35052 ATATAATGTAATAGGTAAT-GGTT
1 ATATAATGTAATAGGT-ATCGGTT
35075 ATAT
1 ATAT
35079 TGTAAAGTGT
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
23 42 0.95
24 2 0.05
ACGTcount: A:0.36, C:0.05, G:0.19, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTATCGGTT
Found at i:35698 original size:30 final size:30
Alignment explanation
Indices: 35649--35716 Score: 77
Period size: 31 Copynumber: 2.2 Consensus size: 30
35639 GTTACGGTAT
* *
35649 ATATTATTATTAAATT-AAAA-ATTCTAAATA
1 ATATT-TTATAAAATTAAAAACAATC-AAATA
35679 ATATTTTATAAAATATAAAAACAATCAAATA
1 ATATTTTATAAAAT-TAAAAACAATCAAATA
35710 ATATTTT
1 ATATTTT
35717 GTGCAAATGA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
29 8 0.24
30 6 0.18
31 16 0.48
32 3 0.09
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.41
Consensus pattern (30 bp):
ATATTTTATAAAATTAAAAACAATCAAATA
Found at i:35891 original size:22 final size:21
Alignment explanation
Indices: 35861--35918 Score: 71
Period size: 22 Copynumber: 2.7 Consensus size: 21
35851 AATAGGTAAC
*
35861 ATATGATGTAATAGTAGCCCTT
1 ATATAATGTAATAGTA-CCCTT
* *
35883 ATATAATGTAATAGGTATCGTT
1 ATATAATGTAATA-GTACCCTT
35905 ATATAATGTAATAG
1 ATATAATGTAATAG
35919 GTATTGTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 1 0.03
22 28 0.88
23 3 0.09
ACGTcount: A:0.38, C:0.07, G:0.17, T:0.38
Consensus pattern (21 bp):
ATATAATGTAATAGTACCCTT
Found at i:35919 original size:22 final size:22
Alignment explanation
Indices: 35881--35928 Score: 87
Period size: 22 Copynumber: 2.2 Consensus size: 22
35871 ATAGTAGCCC
35881 TTATATAATGTAATAGGTATCG
1 TTATATAATGTAATAGGTATCG
*
35903 TTATATAATGTAATAGGTATTG
1 TTATATAATGTAATAGGTATCG
35925 TTAT
1 TTAT
35929 TGTAAAGTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.35, C:0.02, G:0.17, T:0.46
Consensus pattern (22 bp):
TTATATAATGTAATAGGTATCG
Found at i:36045 original size:849 final size:858
Alignment explanation
Indices: 34058--38034 Score: 7465
Period size: 849 Copynumber: 4.7 Consensus size: 858
34048 AATTCGCAGT
34058 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
1 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
*
34123 AAAAGTATGGACACTTTCAATAAAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
66 AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
*
34188 TAATAGGTATCGTTTATATAATGTAATAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTAT
131 TAATAGGTATCGTTTATATAATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTAT
34253 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTT
196 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTT
34318 -AGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATT
261 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATT
34382 ATTAAATTAAAAATTCTAAATAATATTTTAT-AAATATAAAAACAATCAAATAATTTTTTGTGCA
326 ATTAAATTAAAAATTCTAAATAATATTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCA
34446 AATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAAACACTGTTAAAAAAATTGAAACAT
391 AATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAAACACTGTTAAAAAAATTGAAACAT
34511 AAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTAT--AAAGTATGG--ACTTTCAATATA
456 AAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATA
34572 ATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATGTAATAGGTATCGTTTATATAATGT
521 ATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATGTAATAGGTATCGTTTATAT-A---
34637 AATAGGTAATGGTTATATTGTAAAGTGTCTATCC-TTTTATAAAAGTGTCCATACTTTTTTCACT
582 AATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACT
34701 GTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAG
647 GTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAG
34766 GCGTCTAATGATTTA-TTTTTACGTTACGGTATATATT-TTATTAAATTAAAAATTCTAAATAAT
712 GCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAATTCTAAATAAT
34829 ATTTTAT-AAA-ATAAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATCAATATTG
777 ATTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATCAATATTG
34892 TAGGTGGAAAACATGAA
842 TAGGTGGAAAACATGAA
34909 AC-CTGTT-AAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
1 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
34972 AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
66 AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
35037 TAATAGGTATCGTTTATATAATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTAT
131 TAATAGGTATCGTTTATATAATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTAT
35102 AAAAGTGTCCATACTTTTTTCA-TGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTT
196 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTT
35166 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATT
261 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATT
35231 ATTAAATTAAAAATTCTAAATAATATTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCA
326 ATTAAATTAAAAATTCTAAATAATATTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCA
35296 AATGAAATTATTAAATCAATA-TGTAGGTGGAAAACATGAAACACTGTTAAAAAAATTGAAACAT
391 AATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAAACACTGTTAAAAAAATTGAAACAT
35360 AAATTACATAAGTTTTAAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATAT
456 AAATTACATAAGTTTT-AAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATAT
35425 -ATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATGTAATAGGTATCGTTTATATAAAT
520 AATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATGTAATAGGTATCGTTTATATAAAT
35489 AGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTG
585 AGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTG
35554 GAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCG
650 GAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCG
35619 TCTAATGATTTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAATTCTAAATAATATT
715 TCTAATGATTTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAATTCTAAATAATATT
*
35684 TTATAAAATATAAAAACAATCAAATAATATTTTGTGCAAATGAAATTATTAAATCAATATTGTAG
780 TTATAAAATATAAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATCAATATTGTAG
35749 GTGGAAAACATGAA
845 GTGGAAAACATGAA
35763 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
1 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
35828 AAAAGTATGGACACTTTCAATATAATAGGT-AACATATGATGTAATA-GTAGCCCTTATATAATG
66 AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
*
35891 TAATAGGTATCG-TTATATAATGTAATAGGT-ATTG-T-TATTGTAAAGTGTCTATCCTTTTTAT
131 TAATAGGTATCGTTTATATAATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTAT
35952 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAA-TTAAGG-TATCTTTTGAGTGAGTTTT
196 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTT
36015 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGG--TATA-TATT
261 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATT
36077 ATTAAATTAAAAATTCTAAATAATATTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCA
326 ATTAAATTAAAAATTCTAAATAATATTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCA
36142 AATGAAATTA-TAAATCAATATTGTAGGTGG-AAACATGAAACACTGTTAAAAAAATTGAAACAT
391 AATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAAACACTGTTAAAAAAATTGAAACAT
36205 AAATTACATAAGTTTT-AAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATA
456 AAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATA
*
36269 ATAGGT--ACATATGATGTAATAGGTAGCCC-T-TATAATGTAATAGGTATCGTTATATAATGTA
521 ATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATGTAATAGGTATCGTT-TAT-AT-AA
36330 ATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTG
583 ATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTG
*
36395 TGGAAAACATTAATCTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGG
648 TGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGG
36460 CGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAATTCTAAATAATA
713 CGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAATTCTAAATAATA
36525 -TTTATAAAATAT-AAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATCAATATTGT
778 TTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATCAATATTGT
36588 AGGTGGAAAACATGAA
843 AGGTGGAAAACATGAA
36604 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
1 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
36669 AAAAGTATGGACACTTTC-A-ATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATA-AATG
66 AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
36731 TAATAGGTATCGTTTATATAATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTAT
131 TAATAGGTATCGTTTATATAATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTAT
36796 AAAAGTGTCCATAC-TTTTTCACTGTGGAAAACA-TAATTTAAGGTTATCTTTTGAGTGAGTTTT
196 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTT
36859 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATT
261 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATT
36924 ATTAAATTAAAAATTCTAAATAATATTTTAT-AAATATAAAAACAATCAAATAATTTTTTGTGCA
326 ATTAAATTAAAAATTCTAAATAATATTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCA
36988 AATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAAACACTGTTAAAAAAATTGAAACAT
391 AATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAAACACTGTTAAAAAAATTGAAACAT
37053 AAATTACATAA-TTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATA
456 AAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATA
37117 ATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATGTAATAGGTATCGTTTATATATGTA
521 ATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATGTAATAGGTATCGTTTATATA---A
37182 ATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTATAAAAGTGTCCATAC-TTTTTCACTG
583 ATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTG
37246 TGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAA-TATAGG
648 TGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGG
37310 CGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAATTCTAAATAATA
713 CGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAATTCTAAATAATA
37375 TTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATCAATATTGT
778 TTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATCAATATTGT
37440 AGGTGGAAAACATGAA
843 AGGTGGAAAACATGAA
37456 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTT-AAAAAAGTATCGATCCTTTTTATA
1 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
37520 AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
66 AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
37585 TAATAGGTATCGTTTATATAATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTAT
131 TAATAGGTATCGTTTATATAATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTAT
37650 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTT
196 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTT
37715 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATT
261 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATT
37780 ATTAAATTAAAAATTCTAAATAATA-TTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCA
326 ATTAAATTAAAAATTCTAAATAATATTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCA
37844 AATGAAATTATTAAATCAATATTGTAGGTGGAAAACATG-AACACTGTTAAAAAAATTGAAACAT
391 AATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAAACACTGTTAAAAAAATTGAAACAT
37908 AAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATA
456 AAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATA
37973 ATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATGTAATAGGTATCGTTTATATAA
521 ATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATGTAATAGGTATCGTTTATATAA
38035 TGTAATAGGT
Statistics
Matches: 3066, Mismatches: 10, Indels: 98
0.97 0.00 0.03
Matches are distributed among these distances:
839 9 0.00
840 54 0.02
841 183 0.06
842 43 0.01
843 268 0.09
844 119 0.04
845 59 0.02
846 135 0.04
847 63 0.02
848 140 0.05
849 467 0.15
850 343 0.11
851 165 0.05
852 230 0.08
853 121 0.04
854 194 0.06
855 81 0.03
856 392 0.13
ACGTcount: A:0.40, C:0.08, G:0.13, T:0.39
Consensus pattern (858 bp):
ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
TAATAGGTATCGTTTATATAATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTAT
AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTT
AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATT
ATTAAATTAAAAATTCTAAATAATATTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCA
AATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAAACACTGTTAAAAAAATTGAAACAT
AAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATA
ATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATGTAATAGGTATCGTTTATATAAATA
GGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGG
AAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGT
CTAATGATTTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAATTCTAAATAATATTT
TATAAAATATAAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATCAATATTGTAGG
TGGAAAACATGAA
Found at i:36327 original size:22 final size:22
Alignment explanation
Indices: 36277--36346 Score: 79
Period size: 21 Copynumber: 3.2 Consensus size: 22
36267 TAATAGGTAC
* * **
36277 ATATGATGTAATAGGTAGCCCT
1 ATATAATGTAATAGGTATCGTT
36299 -TATAATGTAATAGGTATCGTT
1 ATATAATGTAATAGGTATCGTT
*
36320 ATATAATGTAATAGGTAATGGTT
1 ATATAATGTAATAGGT-ATCGTT
36343 ATAT
1 ATAT
36347 TGTAAAGTGT
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
21 17 0.41
22 15 0.37
23 9 0.22
ACGTcount: A:0.36, C:0.06, G:0.20, T:0.39
Consensus pattern (22 bp):
ATATAATGTAATAGGTATCGTT
Found at i:36757 original size:23 final size:23
Alignment explanation
Indices: 36701--36762 Score: 81
Period size: 22 Copynumber: 2.7 Consensus size: 23
36691 ATAGGTAAAC
*
36701 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGCCCTT
* **
36724 ATA-AATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCCCTT
36746 ATATAATGTAATAGGTA
1 ATATAATGTAATAGGTA
36763 ATGGTTATAT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
22 18 0.53
23 16 0.47
ACGTcount: A:0.37, C:0.06, G:0.19, T:0.37
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCCCTT
Found at i:36770 original size:23 final size:23
Alignment explanation
Indices: 36701--36772 Score: 76
Period size: 23 Copynumber: 3.2 Consensus size: 23
36691 ATAGGTAAAC
* * **
36701 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTATCGGTT
*
36724 ATA-AATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTATCGGTT
36746 ATATAATGTAATAGGTAAT-GGTT
1 ATATAATGTAATAGGT-ATCGGTT
36769 ATAT
1 ATAT
36773 TGTAAAGTGT
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
22 18 0.43
23 22 0.52
24 2 0.05
ACGTcount: A:0.36, C:0.06, G:0.19, T:0.39
Consensus pattern (23 bp):
ATATAATGTAATAGGTATCGGTT
Found at i:37183 original size:22 final size:23
Alignment explanation
Indices: 37127--37188 Score: 81
Period size: 23 Copynumber: 2.7 Consensus size: 23
37117 ATAGGTAAAC
*
37127 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGCCCTT
* **
37150 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCCCTT
37173 ATAT-ATGTAATAGGTA
1 ATATAATGTAATAGGTA
37189 ATGGTTATAT
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
22 12 0.34
23 23 0.66
ACGTcount: A:0.35, C:0.06, G:0.19, T:0.39
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCCCTT
Found at i:37196 original size:22 final size:22
Alignment explanation
Indices: 37127--37203 Score: 77
Period size: 23 Copynumber: 3.5 Consensus size: 22
37117 ATAGGTAAAC
* **
37127 ATATGATGTAATAGGTAGCCCTT
1 ATAT-ATGTAATAGGTATCGGTT
*
37150 ATATAATGTAATAGGTATCGTTT
1 ATAT-ATGTAATAGGTATCGGTT
37173 ATATATGTAATAGGTAAT-GGTT
1 ATATATGTAATAGGT-ATCGGTT
37195 ATAT-TGTAA
1 ATATATGTAA
37204 AGTGTCTATC
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
21 5 0.10
22 18 0.38
23 25 0.52
ACGTcount: A:0.35, C:0.05, G:0.19, T:0.40
Consensus pattern (22 bp):
ATATATGTAATAGGTATCGGTT
Found at i:37585 original size:23 final size:23
Alignment explanation
Indices: 37554--37616 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
37544 ATAGGTAAAC
*
37554 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGCCCTT
* **
37577 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCCCTT
37600 ATATAATGTAATAGGTA
1 ATATAATGTAATAGGTA
37617 ATGGTTATAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.37, C:0.06, G:0.19, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCCCTT
Found at i:37624 original size:23 final size:23
Alignment explanation
Indices: 37554--37626 Score: 85
Period size: 23 Copynumber: 3.2 Consensus size: 23
37544 ATAGGTAAAC
* * **
37554 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTATCGGTT
*
37577 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTATCGGTT
37600 ATATAATGTAATAGGTAAT-GGTT
1 ATATAATGTAATAGGT-ATCGGTT
37623 ATAT
1 ATAT
37627 TGTAAAGTGT
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
23 42 0.95
24 2 0.05
ACGTcount: A:0.36, C:0.05, G:0.19, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTATCGGTT
Found at i:38046 original size:23 final size:23
Alignment explanation
Indices: 37983--38047 Score: 94
Period size: 23 Copynumber: 2.8 Consensus size: 23
37973 ATAGGTAAAC
* *
37983 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTATCCCTT
**
38006 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTATCCCTT
38029 ATATAATGTAATAGGTATC
1 ATATAATGTAATAGGTATC
38048 TATCTCGCAT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.35, C:0.08, G:0.18, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTATCCCTT
Found at i:38271 original size:18 final size:18
Alignment explanation
Indices: 38250--38286 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
38240 GTAATTGGAG
38250 TTTGAATTTAAATTTCAA
1 TTTGAATTTAAATTTCAA
* *
38268 TTTGAGTTTGAATTTCAA
1 TTTGAATTTAAATTTCAA
38286 T
1 T
38287 ATATATTTCG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.32, C:0.05, G:0.11, T:0.51
Consensus pattern (18 bp):
TTTGAATTTAAATTTCAA
Found at i:38294 original size:24 final size:24
Alignment explanation
Indices: 38242--38288 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
38232 TTTCATATGT
* *
38242 AATTGGAGTTTGAATTTAAATTTC
1 AATTTGAGTTTGAATTTAAATATC
*
38266 AATTTGAGTTTGAATTTCAATAT
1 AATTTGAGTTTGAATTTAAATAT
38289 ATATTTCGGC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.34, C:0.04, G:0.15, T:0.47
Consensus pattern (24 bp):
AATTTGAGTTTGAATTTAAATATC
Found at i:39441 original size:23 final size:23
Alignment explanation
Indices: 39411--39460 Score: 100
Period size: 23 Copynumber: 2.2 Consensus size: 23
39401 GGTATATATA
39411 ACCTTTAGATTCATATTTTAGCC
1 ACCTTTAGATTCATATTTTAGCC
39434 ACCTTTAGATTCATATTTTAGCC
1 ACCTTTAGATTCATATTTTAGCC
39457 ACCT
1 ACCT
39461 GGGAAAGAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.26, C:0.24, G:0.08, T:0.42
Consensus pattern (23 bp):
ACCTTTAGATTCATATTTTAGCC
Found at i:39579 original size:18 final size:19
Alignment explanation
Indices: 39556--39592 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
39546 TCAACAATAG
39556 CTGCAAAAAGGG-CACCGA
1 CTGCAAAAAGGGACACCGA
*
39574 CTGCAAAAGGGGACACCGA
1 CTGCAAAAAGGGACACCGA
39593 ATTCGGTGAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.38, C:0.27, G:0.30, T:0.05
Consensus pattern (19 bp):
CTGCAAAAAGGGACACCGA
Found at i:40049 original size:16 final size:17
Alignment explanation
Indices: 40028--40059 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
40018 TTACTATTCG
40028 CGTGAATAGT-AAATTT
1 CGTGAATAGTGAAATTT
40044 CGTGAATAGTGAAATT
1 CGTGAATAGTGAAATT
40060 CGGTCGGCGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.38, C:0.06, G:0.22, T:0.34
Consensus pattern (17 bp):
CGTGAATAGTGAAATTT
Done.