genome.fa.s9251.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009251.1 Hibiscus syriacus cultivar Beakdansim tig00112894_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52425

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5930--5957	13	2.2	13	100	0	56	39	21	21	17	1.93
7918--7967	18	2.8	18	100	0	100	50	16	4	30	1.63
9987--10026	21	1.9	21	94	0	71	15	17	37	30	1.90
9986--10038	21	2.5	21	84	0	70	18	22	32	26	1.97
14116--14142	3	9.0	3	100	0	54	33	0	33	33	1.58
18141--18187	2	23.5	2	100	0	94	51	0	0	48	1.00
18717--18741	12	2.1	12	100	0	50	8	52	16	24	1.70
19789--19826	20	1.9	20	88	0	58	21	26	10	42	1.85
20462--20495	16	2.1	17	94	5	61	35	8	20	35	1.84
24990--25027	20	1.9	20	88	0	58	21	26	10	42	1.85
26437--26532	20	4.7	21	77	5	97	39	16	23	19	1.92
26437--26532	41	2.3	41	96	0	174	39	16	23	19	1.92
26462--26594	41	3.2	41	80	5	117	38	20	21	19	1.94
26521--26615	20	4.7	20	77	5	82	34	24	17	23	1.96
27135--27201	19	3.5	19	83	2	80	49	23	16	10	1.77
27197--27380	19	10.1	19	76	13	172	13	23	19	43	1.86
27268--27355	33	2.6	33	92	1	140	13	27	20	38	1.90
27334--27380	20	2.3	20	75	13	51	14	25	12	46	1.80
29358--29480	42	2.9	42	80	2	122	22	36	17	22	1.95
29414--29480	21	3.2	21	66	6	55	23	35	20	19	1.95
30836--30871	14	2.6	14	95	0	63	30	0	25	44	1.54
31049--31166	19	6.7	19	65	19	67	12	23	21	42	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31053--31146	33	2.8	33	96	0	170	11	24	20	43	1.85
35521--35555	14	2.5	14	85	0	52	48	20	0	31	1.50
34560--35956	589	2.4	587	98	0	2685	36	18	12	32	1.89
35922--35998	20	3.8	20	96	0	136	37	18	23	20	1.94
36017--36084	19	3.8	19	87	12	101	13	22	17	47	1.82
36199--36235	14	2.6	14	86	0	56	48	21	0	29	1.50
38098--38164	19	3.5	19	83	4	89	37	23	23	14	1.93
38137--38246	31	3.4	32	94	3	195	46	24	19	10	1.80
38330--38375	20	2.3	20	88	0	65	15	21	26	36	1.93
38848--38892	18	2.5	18	85	0	63	15	15	42	26	1.87
40198--40235	20	1.9	20	88	0	58	50	21	15	13	1.78
40497--40539	21	2.0	21	95	0	77	18	16	44	20	1.87
40724--40817	20	4.7	20	80	2	89	23	18	24	34	1.96
40744--40821	41	1.9	41	86	0	111	21	16	21	39	1.92
40704--40818	20	5.7	20	78	5	88	23	17	23	35	1.95
40807--40857	20	2.5	20	83	0	66	17	23	19	39	1.92
45893--46038	59	2.5	59	84	7	190	41	4	20	33	1.74
45939--46025	30	3.0	29	73	15	81	39	4	21	34	1.74
45893--46067	59	3.0	58	78	12	187	41	5	19	33	1.75
46236--46263	3	9.3	3	100	0	56	32	0	0	67	0.91
47566--47605	16	2.4	16	87	8	53	32	10	0	57	1.32
48745--48878	21	6.5	21	75	17	104	31	23	23	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48765--48878	40	2.8	41	90	5	178	32	21	23	22	1.98
49623--49755	21	6.4	20	73	15	119	39	23	17	20	1.92
49643--49773	41	3.2	42	93	3	221	38	24	16	20	1.93
50002--50031	15	2.1	14	93	6	51	53	6	0	40	1.27
50217--50278	24	2.6	24	92	0	97	32	22	12	32	1.92
50727--50765	15	2.8	13	82	14	51	61	0	0	38	0.96

Tables:   1

The End!