genome.fa.s9252.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009252.1 Hibiscus syriacus cultivar Beakdansim tig00112900_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  120143

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4222--4397	59	3.0	59	79	11	191	41	5	19	32	1.75
4268--4354	30	3.0	29	73	15	81	39	4	21	34	1.74
4569--4599	3	10.3	3	100	0	62	32	0	0	67	0.91
5926--5964	16	2.3	16	86	8	51	33	10	0	56	1.33
7126--7260	21	6.5	21	78	10	127	31	22	22	22	1.99
7146--7260	41	2.8	41	93	2	187	32	20	23	23	1.98
7167--7239	20	3.6	20	82	10	103	35	19	21	23	1.96
7382--7414	5	6.6	5	96	0	57	24	54	21	0	1.45
7382--7419	15	2.5	15	86	0	58	26	50	23	0	1.50
8023--8157	21	6.4	21	75	16	136	40	22	17	20	1.92
8044--8176	42	3.2	42	92	2	214	39	24	16	20	1.92
8065--8176	21	5.3	22	70	23	89	37	25	16	19	1.93
8414--8440	14	1.9	14	100	0	54	51	7	0	40	1.30
8628--8689	24	2.6	24	92	0	97	32	22	12	32	1.92
9142--9180	15	2.8	13	82	14	51	61	0	0	38	0.96
16649--16722	31	2.4	31	84	2	96	18	14	14	51	1.77
17766--17794	2	14.5	2	100	0	58	0	48	0	51	1.00
20039--20073	18	1.9	18	88	0	52	60	0	0	40	0.97
21990--22020	2	15.5	2	100	0	62	51	0	0	48	1.00
23542--23579	20	1.9	20	88	0	58	15	47	13	23	1.81
25257--25313	27	2.1	27	90	0	87	29	10	45	14	1.78
31582--31631	20	2.4	21	83	6	66	66	0	2	32	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35081--35111	4	7.5	4	96	3	53	0	22	0	77	0.77
36467--36510	18	2.4	19	85	11	56	25	0	4	70	1.06
44194--44229	6	6.0	6	96	0	63	47	0	52	0	1.00
48269--48324	26	2.2	26	81	12	62	60	12	5	21	1.51
52339--52435	3	33.0	3	85	2	126	32	3	0	63	1.10
52324--52433	12	9.9	11	77	16	61	30	4	0	64	1.13
52915--52953	19	2.1	19	90	9	62	79	5	15	0	0.90
53802--53901	12	7.9	13	69	13	66	36	0	4	60	1.16
53872--53901	14	2.2	14	94	5	53	40	0	0	60	0.97
54588--54624	15	2.7	15	88	12	53	24	5	8	62	1.44
65175--65221	14	3.5	13	83	11	60	89	0	10	0	0.49
65177--65222	23	2.0	23	91	0	74	86	0	13	0	0.56
65172--65218	11	4.2	11	79	15	60	87	0	12	0	0.55
65178--65222	15	3.0	14	87	12	63	86	0	13	0	0.57
66200--66628	52	8.2	52	93	2	711	24	14	22	37	1.92
66578--66776	83	2.4	83	98	0	380	28	13	22	36	1.91
67329--68563	114	10.9	113	91	1	1954	37	14	19	28	1.91
67347--68563	227	5.4	227	96	0	2116	37	14	19	28	1.91
67332--68563	341	3.6	340	91	1	1986	37	14	19	28	1.91
68811--68904	3	32.0	3	84	2	120	32	3	0	63	1.10
68802--68889	12	7.3	12	83	7	90	32	5	0	61	1.20
69385--69423	19	2.1	19	90	9	62	79	5	15	0	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70267--70365	13	7.9	13	69	14	57	36	0	4	59	1.16
70336--70365	14	2.2	14	94	5	53	40	0	0	60	0.97
83215--83602	4	97.5	4	94	1	546	44	24	5	25	1.76
84504--84554	27	2.0	24	85	14	68	56	5	3	33	1.42
86968--86994	13	2.1	13	100	0	54	51	0	0	48	1.00
91677--91728	28	1.9	26	81	14	61	26	9	1	61	1.38
91794--91855	19	3.1	19	77	11	52	17	4	4	72	1.20
91799--91861	22	2.8	21	85	9	72	19	4	4	71	1.22
95022--95070	13	3.5	13	81	13	62	77	2	16	4	1.01
95146--95283	69	2.0	69	88	0	204	39	21	13	26	1.90
96196--96315	32	3.7	31	82	4	132	29	14	20	36	1.91
96994--97066	32	2.3	32	100	0	146	28	28	16	26	1.97
97115--97263	68	2.2	68	83	5	180	32	21	8	37	1.83
97989--98186	110	1.8	110	86	0	288	34	23	19	22	1.96
97986--98238	110	2.3	106	81	5	285	32	24	19	23	1.97
99477--99515	20	2.1	19	85	9	53	23	7	2	66	1.30
99610--99650	17	2.4	17	87	4	55	17	2	7	73	1.17
99589--99657	9	7.7	9	71	12	52	17	4	5	72	1.21
107096--107150	24	2.3	24	84	3	67	49	0	1	49	1.11
108348--108602	133	1.9	135	94	2	451	40	14	9	36	1.77
114856--114885	12	2.4	13	94	5	53	60	0	0	40	0.97
114762--114885	50	2.5	48	72	11	108	59	0	2	37	1.10

Tables:   1

The End!