Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009253.1 Hibiscus syriacus cultivar Beakdansim tig00112901_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94475

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5290--5334
3
14.0
3
82
13
54
40
0
0
60
0.97
5249--5329
26
3.1
24
77
13
81
40
2
1
55
1.21
5272--5342
17
4.2
17
76
16
69
42
1
1
54
1.17
5260--5344
26
3.2
26
70
16
68
42
2
1
54
1.21
6603--6668
26
2.6
25
71
21
64
43
3
3
50
1.33
6585--6668
18
4.8
18
75
23
56
42
3
3
50
1.37
7804--7830
2
13.5
2
100
0
54
48
0
0
51
1.00
12682--12713
5
6.2
5
96
3
55
0
18
56
25
1.42
13313--13420
55
1.9
56
90
1
173
35
6
23
35
1.80
14099--14201
41
2.5
41
85
3
136
24
22
20
33
1.97
14232--14270
18
2.2
18
90
0
60
43
10
20
25
1.83
22553--22600
22
2.2
22
92
7
80
14
35
22
27
1.93
24084--24128
23
2.0
23
86
0
63
40
0
0
60
0.97
27421--27466
23
2.1
23
84
8
60
52
6
6
34
1.53
28022--28106
32
2.7
31
75
15
84
27
31
28
12
1.93
30496--30549
22
2.5
22
90
0
90
33
27
24
14
1.94
30571--30597
13
2.1
13
100
0
54
29
14
22
33
1.94
31583--31614
2
16.0
2
100
0
64
50
0
0
50
1.00
37265--37305
21
1.9
22
85
5
57
51
12
2
34
1.52
38071--38105
18
1.9
18
88
11
54
71
0
17
11
1.14
38195--38332
54
2.7
53
90
6
221
51
15
6
26
1.67
43670--43694
6
4.2
6
100
0
50
20
48
0
32
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44256--44316
29
2.1
29
82
8
72
34
8
4
52
1.53
44276--44331
29
2.0
29
85
3
78
32
12
3
51
1.56
44456--44533
29
2.7
29
79
0
93
43
5
20
30
1.73
44615--44696
41
2.0
41
97
0
155
45
9
7
37
1.65
45357--45429
30
2.4
30
93
0
119
43
8
43
4
1.53
50888--50913
10
2.6
10
100
0
52
92
0
0
7
0.39
64125--64212
24
3.7
24
75
6
79
43
17
12
27
1.84
65229--65316
24
3.7
24
89
3
106
42
20
12
25
1.87
74309--74456
60
2.5
60
85
4
183
32
20
6
40
1.78
81799--81889
20
4.9
20
68
20
72
34
5
15
45
1.69
81798--81947
53
2.9
52
96
3
275
32
6
13
48
1.67
81904--81943
20
2.0
20
95
0
71
37
5
12
45
1.64
86340--86429
20
5.1
19
68
23
70
34
4
15
45
1.66
86392--86429
19
2.0
20
89
5
60
36
5
15
42
1.70
86340--86482
51
2.8
51
92
6
231
34
3
13
48
1.60

Tables:   1

The End!