genome.fa.s9254.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009254.1 Hibiscus syriacus cultivar Beakdansim tig00112902_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  155719

Tables:   1   

This is table  1  of  1  ( 95 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7086--7176	20	4.9	20	68	20	72	34	5	15	45	1.69
7085--7234	53	2.9	52	96	3	275	32	6	13	48	1.67
7191--7230	20	2.0	20	95	0	71	37	5	12	45	1.64
11615--11644	14	2.1	14	93	0	51	36	6	23	33	1.81
11629--11731	31	3.6	30	65	30	82	32	3	13	50	1.60
11659--11698	20	2.0	21	90	5	64	35	5	15	45	1.68
11629--11750	53	2.4	52	95	4	221	32	4	13	50	1.60
11712--11751	20	2.0	20	95	0	71	37	5	12	45	1.64
22383--22471	45	2.0	45	84	4	117	17	28	15	38	1.91
22443--22601	42	3.8	42	75	11	132	16	30	13	38	1.88
22404--22641	84	2.8	87	82	4	261	18	29	13	39	1.88
22395--22635	45	5.6	44	73	13	187	17	29	13	39	1.88
22561--22662	45	2.3	46	78	11	113	14	24	14	46	1.83
28211--28257	23	2.1	23	84	7	62	51	0	0	48	1.00
28211--28273	23	2.8	22	77	13	58	47	0	3	49	1.17
28400--28461	26	2.4	26	81	10	74	48	0	6	45	1.28
32814--32882	5	14.4	5	77	11	65	75	4	1	18	1.05
32809--32898	4	21.2	4	72	24	53	75	3	1	20	1.01
33642--33743	34	2.9	36	88	11	165	27	14	14	43	1.85
34290--34842	105	5.3	105	89	3	762	22	17	26	33	1.96
35446--35603	68	2.4	65	85	4	208	37	9	20	32	1.85
35446--35629	65	2.8	65	83	3	215	38	9	20	31	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35578--35828	36	7.2	36	76	10	209	38	13	19	28	1.89
35527--35832	137	2.2	136	84	1	389	39	12	19	28	1.88
35708--35824	37	3.2	37	87	6	159	40	12	17	29	1.87
35768--35851	37	2.3	36	84	8	100	41	11	19	27	1.86
36194--36229	18	2.0	18	88	0	54	41	30	8	19	1.81
36632--36686	22	2.5	22	96	0	101	25	12	25	36	1.91
37325--37395	8	8.9	8	73	22	51	0	16	5	77	0.95
37308--37368	25	2.3	27	83	8	72	1	16	6	75	1.09
37295--37372	16	4.6	17	71	15	56	1	16	7	74	1.11
37326--37397	23	3.1	23	78	13	67	0	16	5	77	0.94
37358--37400	15	2.9	15	82	6	52	0	13	4	81	0.84
40413--40490	5	16.4	5	85	5	92	75	3	0	20	0.95
40408--40534	48	2.6	47	80	10	139	69	3	4	22	1.22
41633--41689	21	2.7	21	83	0	78	10	31	36	21	1.87
54308--54362	24	2.3	24	93	0	92	50	7	0	41	1.30
57199--57262	33	1.9	33	90	0	101	23	9	0	67	1.20
57941--58015	38	2.0	37	84	5	98	46	4	2	46	1.35
61131--61186	2	27.0	2	82	13	69	46	5	1	46	1.36
69292--69428	23	6.0	23	96	0	247	27	16	25	30	1.97
70288--70358	31	2.3	29	77	13	70	46	4	5	43	1.46
71388--71448	2	30.5	2	100	0	122	49	0	0	50	1.00
74274--74308	6	5.8	6	100	0	70	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83477--83520	21	2.1	21	86	0	61	27	27	27	18	1.98
83959--83996	20	2.0	20	89	5	60	50	2	10	36	1.51
85210--85269	23	2.6	23	91	0	93	20	26	28	25	1.99
86410--86536	31	4.1	31	85	6	159	32	22	18	26	1.97
86415--86534	63	1.9	62	84	5	161	32	20	19	27	1.97
86779--86809	2	15.0	2	93	6	53	48	3	0	48	1.17
87315--87353	20	1.9	21	94	5	71	30	12	20	35	1.90
87865--87920	21	2.7	21	100	0	112	32	16	8	42	1.79
91085--91156	30	2.3	32	83	4	85	34	20	15	29	1.93
93517--93641	31	4.0	31	88	2	180	20	18	23	38	1.93
99028--99105	30	2.6	30	93	2	131	19	20	24	35	1.95
99450--99492	21	2.0	21	100	0	86	25	23	27	23	2.00
99605--99629	13	1.9	13	100	0	50	44	8	0	48	1.32
99923--99955	16	2.2	15	89	10	50	48	0	3	48	1.17
100112--100236	59	2.1	59	81	8	139	34	17	14	33	1.90
107355--107513	60	2.7	60	82	5	180	34	17	3	44	1.67
108450--108474	2	12.5	2	100	0	50	52	0	0	48	1.00
108794--108869	35	2.1	36	90	2	118	46	21	0	32	1.52
109056--109429	183	2.0	187	97	2	720	44	11	9	34	1.74
109552--109844	148	2.0	146	91	2	480	45	8	5	39	1.59
114460--115164	171	4.1	172	86	5	866	50	17	12	20	1.77
114460--115164	343	2.1	336	84	4	907	50	17	12	20	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115871--115928	31	1.9	31	86	10	84	56	3	12	27	1.51
122913--122983	19	3.7	19	98	0	133	26	21	30	21	1.98
122970--123122	64	2.4	63	92	5	256	30	18	22	28	1.98
123130--123167	20	1.9	20	94	0	67	23	21	28	26	1.99
123472--124197	252	2.9	246	83	7	849	22	15	21	40	1.91
125511--125535	7	3.6	7	100	0	50	16	0	28	56	1.41
127324--127793	120	3.9	120	83	4	554	35	26	18	18	1.94
127326--127775	123	3.7	120	84	5	532	36	26	18	18	1.94
127321--127826	61	8.3	59	77	7	460	36	26	18	18	1.94
127321--127826	243	2.1	242	82	4	599	36	26	18	18	1.94
130236--130285	21	2.4	20	87	9	73	26	14	22	38	1.91
130348--130736	183	2.1	184	89	3	588	45	7	3	43	1.47
130854--130882	15	1.9	15	100	0	58	17	6	27	48	1.72
131125--131153	2	14.5	2	100	0	58	51	0	0	48	1.00
131433--131488	27	2.1	27	86	0	76	33	23	14	28	1.94
134635--134699	21	3.1	21	90	0	103	26	26	21	26	2.00
137581--137650	34	2.1	34	97	0	131	30	18	17	34	1.94
146898--147079	36	5.0	35	84	9	224	45	7	3	42	1.51
146898--147090	74	2.6	73	86	8	250	45	7	4	42	1.52
146898--147112	74	2.9	74	83	9	194	45	9	3	41	1.54
147734--148856	248	4.6	247	86	5	980	24	18	26	30	1.98
147951--148874	165	5.6	164	80	6	920	24	19	25	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
147867--148874	246	4.1	248	87	2	1185	24	19	25	30	1.98
147732--148857	413	2.7	411	86	3	1396	24	19	26	30	1.98
147742--148874	84	13.8	83	75	6	950	24	19	26	30	1.98
152245--152308	19	3.4	19	97	2	121	68	9	10	10	1.39
153773--153797	2	12.5	2	100	0	50	52	0	0	48	1.00
153864--153912	19	2.6	19	83	6	55	77	0	6	16	0.96
153951--153998	20	2.4	20	78	0	51	60	6	6	27	1.45

Tables:   1

The End!