genome.fa.s9256.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009256.1 Hibiscus syriacus cultivar Beakdansim tig00112904_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65801

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2425--2455	16	1.9	16	93	0	53	48	6	6	38	1.55
8290--8503	117	1.8	119	83	8	285	50	5	16	27	1.68
9520--9550	16	1.9	16	93	0	53	51	9	12	25	1.70
28308--28333	12	2.2	12	100	0	52	15	7	7	69	1.35
29047--29249	98	2.1	97	82	7	241	33	17	18	31	1.94
29216--29259	13	3.4	13	93	0	70	34	18	18	29	1.94
35099--35141	18	2.3	19	92	4	70	67	0	4	27	1.10
37187--37516	46	7.2	46	92	0	536	33	21	6	37	1.80
37607--37721	61	1.9	61	87	0	167	29	27	18	24	1.98
39580--39626	13	3.8	13	81	16	64	14	19	48	17	1.81
39642--39693	10	5.3	10	80	11	63	36	26	21	15	1.93
46847--46898	13	3.8	13	78	9	59	13	19	50	17	1.78
46853--46878	5	5.2	5	100	0	52	0	23	57	19	1.40
46911--46956	10	4.6	10	84	10	67	34	28	21	15	1.94
46911--46957	11	4.6	11	82	17	66	34	27	21	17	1.95
46919--46957	19	2.0	20	95	5	71	35	25	20	17	1.95
50978--51041	5	12.2	5	77	11	58	1	18	1	78	0.92
50972--51059	13	6.8	13	75	14	58	2	18	1	78	0.92
50973--51059	18	4.9	18	74	16	67	2	18	1	78	0.93
50972--51060	6	14.8	6	71	16	60	2	17	1	78	0.91
50976--51059	35	2.4	34	80	13	91	2	19	1	77	0.95
51030--51066	19	2.1	19	85	10	51	8	18	0	72	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53288--53319	13	2.5	13	94	0	55	40	18	21	18	1.91
53397--53438	21	2.0	21	95	0	75	26	28	16	28	1.97
53840--54169	46	7.2	46	91	0	527	33	21	6	37	1.81
56047--56071	7	3.6	7	100	0	50	12	0	0	88	0.53
61365--61415	21	2.4	21	96	0	93	39	15	15	29	1.89
61840--62051	54	3.9	53	86	2	298	32	16	16	34	1.91
61835--62058	108	2.1	108	88	1	342	31	16	17	34	1.92

Tables:   1

The End!