genome.fa.s926.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000926.1 Hibiscus syriacus cultivar Beakdansim tig00001849_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69952

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4036--4074	2	19.5	2	83	0	51	51	2	2	43	1.29
9114--9458	181	1.9	181	98	0	672	33	13	15	37	1.87
10020--10440	200	2.1	200	77	6	426	33	11	19	35	1.88
21831--21884	20	2.7	20	91	0	90	33	22	14	29	1.94
21893--21945	20	2.7	20	93	0	88	24	28	20	26	1.99
22504--22545	19	2.2	19	91	0	66	52	26	16	4	1.63
22541--22591	19	2.7	19	90	0	84	13	19	19	47	1.83
22576--22661	33	2.6	33	92	1	136	13	25	22	38	1.91
22629--22686	20	2.9	20	80	10	64	13	24	18	43	1.87
24740--24806	21	3.2	21	66	6	55	23	35	20	19	1.95
24688--24806	42	2.8	42	76	12	102	23	36	17	22	1.95
26238--26316	34	2.4	34	93	2	133	46	21	24	7	1.77
26326--26452	33	3.9	32	84	8	175	15	22	18	43	1.88
26326--26451	66	1.9	66	95	0	225	15	22	19	42	1.88
26326--26472	33	4.2	36	78	13	141	16	21	19	42	1.89
28743--28767	12	2.1	12	100	0	50	0	28	0	72	0.86
28942--28995	24	2.2	24	90	0	81	38	20	16	24	1.92
30032--30089	20	2.9	20	92	0	98	37	22	22	17	1.93
30113--30166	14	3.5	14	77	22	63	11	20	20	48	1.80
30095--30165	33	2.2	33	84	0	88	19	19	21	39	1.93
30108--30185	33	2.4	33	91	0	120	12	23	21	42	1.87
30273--30309	14	2.6	14	86	0	56	48	21	0	29	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32180--32247	20	3.5	20	81	2	75	39	23	22	14	1.91
32295--32352	14	3.9	14	75	16	53	12	15	22	50	1.77
32278--32368	32	2.8	33	91	3	148	13	17	20	48	1.81
32353--32407	20	2.8	19	83	8	65	16	23	23	36	1.94
32889--32933	18	2.5	18	85	0	63	15	15	42	26	1.87
34785--34848	20	3.2	20	90	0	101	29	18	26	25	1.98
34765--34900	41	3.3	41	76	6	150	25	16	23	33	1.96
34892--34980	41	2.2	41	100	0	142	17	23	17	40	1.91
34893--34963	21	3.4	21	80	3	99	15	23	18	42	1.88
34907--34980	20	3.7	20	80	3	94	17	22	18	40	1.91
35059--35104	19	2.3	20	81	7	58	26	17	28	28	1.98
35910--35943	2	17.5	2	93	6	61	50	0	0	50	1.00
37026--37192	30	5.8	29	71	18	109	38	5	1	54	1.34
37012--37089	28	2.8	27	74	14	68	39	5	1	53	1.31
37028--37160	30	4.5	29	77	9	110	38	6	1	54	1.34
37028--37157	59	2.2	59	82	6	147	39	6	1	53	1.35
39162--39284	43	2.9	43	77	1	140	34	18	21	26	1.96
41183--41269	41	2.1	41	89	0	129	32	21	17	28	1.96
41192--41373	41	4.4	40	75	13	138	34	22	16	26	1.95
41954--41994	21	2.0	21	90	0	64	14	29	26	29	1.95
45060--45100	20	2.0	20	86	9	57	70	7	0	21	1.11
60060--60180	22	5.8	21	83	8	81	33	20	19	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60121--60194	22	3.5	22	90	7	118	28	20	20	31	1.97
60080--60339	41	6.3	41	75	14	157	29	20	18	31	1.97
60182--60239	21	2.8	21	94	0	107	18	17	15	48	1.82
60047--60342	20	14.4	21	78	9	179	29	20	17	31	1.96
60861--60908	19	2.5	19	77	12	53	45	27	16	10	1.80
60926--61014	14	5.6	14	71	23	70	11	23	22	42	1.85
60909--61035	33	3.8	33	92	1	191	11	22	22	43	1.85
61000--61062	20	3.1	21	79	9	67	12	23	15	47	1.80
62755--63131	94	4.1	93	93	3	602	21	11	18	47	1.81
62755--63131	189	2.0	183	90	5	596	21	11	18	47	1.81
63228--63267	14	2.9	14	80	0	53	50	25	17	7	1.72
63256--63293	20	1.9	20	100	0	76	50	28	15	5	1.66
63299--63401	19	5.6	19	76	13	108	12	21	19	46	1.83
63332--63425	19	4.8	19	81	5	107	12	19	18	50	1.78
63328--63425	39	2.5	39	88	1	133	13	19	17	50	1.78
63826--63941	42	2.8	42	77	2	99	23	37	16	23	1.94
65296--65331	14	2.6	14	95	0	63	33	0	22	44	1.53
65438--65484	19	2.5	19	92	0	76	44	19	21	14	1.86
65513--65606	33	2.8	33	86	0	116	13	21	17	47	1.81
65590--65672	20	4.2	20	72	15	64	22	20	22	33	1.97
68140--68193	24	2.2	24	93	0	90	40	20	18	20	1.91
68140--68207	24	2.8	24	84	0	64	38	20	17	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69062--69135	20	3.7	20	79	12	89	39	17	18	24	1.92
69131--69248	21	5.7	21	91	2	202	18	22	15	43	1.88
69245--69287	21	2.0	21	86	4	59	37	16	25	20	1.93
69108--69288	83	2.2	84	78	2	204	26	20	17	34	1.95

Tables:   1

The End!