genome.fa.s9260.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009260.1 Hibiscus syriacus cultivar Beakdansim tig00112911_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  220692

Tables:   1   

This is table  1  of  1  ( 101 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
137--200	19	3.3	19	80	10	76	75	6	3	15	1.14
343--410	29	2.3	29	78	16	70	75	4	7	13	1.17
2132--2204	36	2.0	36	97	0	137	30	19	13	36	1.90
2174--2801	80	7.9	80	85	3	757	31	20	12	36	1.90
2216--2801	239	2.5	238	86	3	793	31	19	12	35	1.90
2172--2801	319	2.0	319	86	4	876	31	20	12	36	1.90
3207--3386	94	1.9	94	88	4	274	26	25	12	36	1.91
5185--5210	10	2.6	10	100	0	52	92	7	0	0	0.39
12124--12149	5	5.2	5	100	0	52	19	38	19	23	1.93
17371--17411	22	2.0	21	85	9	57	24	24	24	26	2.00
25434--25581	36	4.0	37	89	6	219	25	19	14	40	1.89
25434--25579	75	2.0	75	90	2	233	25	19	14	40	1.90
28178--28796	307	2.0	307	97	0	1159	28	17	20	34	1.95
33794--33954	80	2.0	80	97	0	304	40	10	5	43	1.63
37128--37272	60	2.5	59	82	6	177	29	25	5	39	1.78
37128--37272	29	4.9	29	64	17	75	29	25	5	39	1.78
37421--37592	60	2.9	59	79	6	177	44	5	19	30	1.74
41810--41865	25	2.3	23	76	14	58	51	3	0	44	1.18
43305--43346	17	2.5	17	88	3	59	52	0	0	47	1.00
43293--43366	39	2.0	35	87	10	103	51	0	1	47	1.09
43488--44050	76	7.4	76	98	0	1090	35	22	20	21	1.96
44720--44796	22	3.5	22	78	0	91	37	14	11	36	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55223--55278	25	2.3	23	76	14	58	51	3	0	44	1.18
55981--56006	13	2.0	13	100	0	52	7	53	30	7	1.57
57157--57190	18	1.9	17	88	5	50	32	2	0	64	1.08
66585--66682	39	2.5	39	83	9	128	16	7	44	31	1.74
73539--73626	40	2.2	40	91	0	140	37	14	15	31	1.89
76494--76540	19	2.7	17	81	12	51	48	8	8	34	1.64
76509--76547	19	2.1	19	100	0	78	48	10	5	35	1.59
76494--76548	16	3.2	16	78	14	56	47	9	7	36	1.63
78227--78282	27	2.0	28	89	3	87	28	26	7	37	1.83
80509--80557	19	2.6	18	81	9	62	20	4	2	73	1.10
83798--83862	13	5.0	13	84	0	67	29	20	16	33	1.95
83811--83991	85	2.2	84	80	6	197	32	19	18	29	1.96
84087--84125	2	19.5	2	89	10	62	48	2	0	48	1.15
84412--84478	30	2.2	30	100	0	134	65	13	8	11	1.47
93237--93287	19	2.7	18	82	8	66	23	3	1	70	1.14
93317--93370	16	3.5	15	82	7	54	31	1	0	66	1.02
93997--94023	6	4.5	6	100	0	54	14	0	48	37	1.45
95298--95350	24	2.3	22	84	12	70	62	15	1	20	1.42
95298--95351	23	2.3	25	87	9	78	62	14	1	20	1.40
95442--95502	20	3.0	20	76	9	70	50	16	6	26	1.69
100062--100362	34	7.9	34	69	22	181	26	25	12	35	1.92
99976--100389	78	5.3	79	90	3	631	27	24	12	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99976--100389	157	2.6	155	89	3	634	27	24	12	35	1.92
100820--101007	95	2.0	95	88	2	279	25	23	16	35	1.95
100995--101051	19	2.9	19	75	10	60	31	21	14	33	1.92
101939--102030	43	2.1	43	83	0	112	19	28	17	34	1.94
101957--102042	43	2.0	43	88	0	127	18	26	17	37	1.93
102966--103014	18	2.7	18	96	0	89	53	30	0	16	1.43
102963--103023	18	3.4	18	90	0	86	52	26	0	21	1.47
105883--105979	31	2.9	33	71	14	92	38	22	19	19	1.94
111073--111170	27	3.6	28	76	10	105	17	6	26	50	1.69
112048--112097	19	2.6	19	90	0	82	22	38	26	14	1.91
115433--115459	3	9.0	3	100	0	54	66	0	0	33	0.92
115674--115920	79	3.1	78	84	3	289	25	19	24	30	1.98
115880--115982	34	3.0	34	87	5	145	29	17	23	30	1.97
117402--117426	5	5.0	5	100	0	50	60	20	0	20	1.37
122243--122276	17	2.1	16	88	5	50	50	11	0	38	1.39
122453--122481	2	14.5	2	100	0	58	48	0	0	51	1.00
126332--126370	21	1.9	20	84	5	51	35	20	15	28	1.93
133560--133603	21	2.1	21	87	8	63	79	9	9	2	1.02
136393--136487	50	1.9	50	80	4	111	22	14	23	40	1.91
136963--136997	10	3.4	10	84	7	52	85	8	0	5	0.73
136963--136997	11	3.3	11	88	4	54	85	8	0	5	0.73
136946--136988	9	4.8	9	77	11	52	83	9	4	2	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
136945--136987	8	5.0	8	78	15	50	81	11	4	2	0.93
145452--145739	97	2.9	97	92	2	479	47	15	7	29	1.74
145782--145853	11	6.6	11	72	15	51	51	9	1	37	1.44
145866--145940	9	7.9	9	69	16	53	41	21	1	36	1.62
145847--145940	29	3.2	29	77	14	104	42	21	1	35	1.60
145997--146042	19	2.4	18	86	13	58	54	6	6	32	1.52
148160--148194	18	1.9	18	88	0	52	25	11	20	42	1.85
148325--148394	21	3.3	21	93	0	122	31	4	20	44	1.70
148201--148478	140	1.9	139	87	5	394	32	7	18	41	1.78
148560--148926	157	2.3	157	90	2	578	35	16	7	41	1.75
148933--149022	46	2.0	46	90	0	144	43	24	4	27	1.73
149332--149480	64	2.3	64	83	0	199	51	11	11	26	1.72
150256--150375	64	1.9	64	94	0	213	44	13	11	30	1.79
150413--150917	200	2.5	198	87	3	692	30	15	14	38	1.88
155309--156037	200	3.7	200	88	2	1074	30	15	13	40	1.85
160392--161555	200	5.8	198	89	3	1507	31	16	15	36	1.90
160417--161555	399	2.8	398	89	2	1599	30	16	15	37	1.90
165629--165674	19	2.3	20	85	11	67	32	19	0	47	1.50
166085--166555	182	2.6	181	90	3	715	26	16	15	41	1.88
166861--166892	5	6.4	5	92	0	55	25	0	0	75	0.81
170880--171464	292	2.0	292	99	0	1152	40	20	14	25	1.90
189518--189581	23	2.9	22	84	9	78	28	25	23	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
192245--192452	65	3.2	63	82	10	233	30	23	18	26	1.98
196207--196286	20	3.9	21	75	13	69	15	25	35	25	1.94
196227--196286	20	3.0	20	82	2	75	16	25	33	25	1.96
199556--199658	9	10.8	9	69	12	53	17	25	27	30	1.97
199583--199662	19	4.3	19	91	1	135	16	25	30	28	1.96
199583--199664	9	8.8	9	76	7	83	15	26	29	28	1.96
199669--199717	22	2.2	22	92	0	80	18	46	22	12	1.82
208728--208767	21	1.9	21	85	10	55	35	10	2	52	1.48
211847--211908	22	2.8	22	85	0	70	25	22	17	33	1.96
215248--215282	15	2.3	15	100	0	70	37	5	0	57	1.23
216976--217002	4	6.8	4	100	0	54	48	0	0	51	1.00
219340--219374	17	2.1	17	94	0	61	28	0	14	57	1.38
219730--220261	137	3.9	137	82	4	639	34	22	18	23	1.96

Tables:   1

The End!