genome.fa.s9262.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009262.1 Hibiscus syriacus cultivar Beakdansim tig00112913_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63965

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7200--7289	47	1.9	46	82	6	110	58	0	1	40	1.05
7246--7329	29	2.9	30	82	10	77	55	1	1	41	1.15
7246--7321	30	2.5	30	79	12	93	56	0	1	42	1.07
11228--11264	17	2.2	17	100	0	74	56	18	5	18	1.60
11822--11869	17	2.8	17	96	0	87	41	10	6	41	1.64
15347--15399	27	2.0	27	96	3	99	45	11	3	39	1.58
17377--17436	2	30.5	2	96	3	113	50	0	0	50	1.00
23493--23562	34	2.1	34	88	0	104	21	11	35	31	1.89
24321--24395	21	3.6	21	90	0	114	26	24	17	32	1.97
24389--24542	21	7.4	21	88	1	213	22	24	21	31	1.98
24390--24542	82	1.9	83	87	1	227	22	24	21	30	1.99
30386--30501	46	2.5	46	81	2	133	19	18	27	34	1.95
30706--30795	30	3.3	27	81	14	87	48	4	18	27	1.67
30719--30821	30	3.4	30	86	5	136	47	4	20	27	1.70
30719--30852	60	2.2	62	80	10	152	46	5	20	27	1.72
37460--37523	21	3.0	21	81	4	65	23	35	25	15	1.94
37462--37542	21	3.8	21	74	18	60	23	37	24	14	1.93
39787--39857	32	2.2	32	100	0	142	36	2	19	40	1.67
45626--45843	76	2.9	76	78	1	222	29	15	13	41	1.85
45821--45932	38	2.9	38	74	4	100	34	14	9	41	1.79
51130--51219	31	3.0	29	74	13	74	62	4	2	31	1.27
53319--53353	3	12.3	3	88	11	56	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53319--53353	11	3.1	11	87	4	52	68	0	0	31	0.90
53821--53851	16	2.0	16	93	6	55	32	6	6	54	1.51
53467--54420	256	3.8	258	86	3	1312	33	15	15	35	1.90
53924--54016	42	2.3	42	84	3	118	31	21	23	23	1.99
54073--54107	16	2.2	16	89	0	52	34	2	2	60	1.26
54178--54267	41	2.2	41	84	4	119	32	23	20	24	1.98
54178--54257	42	1.9	41	87	2	115	33	22	18	25	1.97
56435--56475	14	3.0	14	83	16	59	7	14	0	78	0.96
56438--56474	15	2.5	15	86	4	58	8	10	0	81	0.89

Tables:   1

The End!