genome.fa.s9264.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009264.1 Hibiscus syriacus cultivar Beakdansim tig00112918_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  131041

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2180--2213	2	17.0	2	100	0	68	50	0	0	50	1.00
2557--2590	16	2.0	18	88	11	54	58	2	0	38	1.13
24629--24692	21	3.4	20	66	29	59	31	4	18	45	1.70
24621--24739	35	3.3	36	88	5	170	32	5	18	42	1.74
25135--25166	16	1.9	17	93	6	57	37	6	21	34	1.79
29208--29268	21	3.2	21	65	29	64	31	4	21	42	1.74
29200--29318	35	3.3	37	88	8	174	31	5	19	43	1.72
31507--31566	31	2.0	31	83	3	77	51	5	18	25	1.66
31599--31651	23	2.4	22	78	12	63	30	1	3	64	1.22
40822--40893	34	2.1	35	86	2	101	51	5	2	40	1.40
40832--40898	34	2.0	34	91	5	109	49	7	2	40	1.46
42814--42856	22	2.0	22	95	0	77	41	18	23	16	1.89
49649--49741	48	1.9	48	88	0	141	18	16	31	34	1.93
55370--55417	20	2.4	20	82	0	60	10	29	58	2	1.43
55387--55418	17	1.9	16	93	6	55	9	31	59	0	1.29
56974--57000	7	3.9	7	100	0	54	0	11	0	88	0.50
63153--63249	27	3.6	27	94	0	167	29	11	14	44	1.80
66907--67029	27	4.6	27	89	4	178	31	12	13	43	1.80
66914--67029	55	2.1	54	90	1	178	31	12	12	43	1.79
72505--72547	20	2.3	19	84	11	61	23	27	9	39	1.85
72510--72547	20	1.9	20	94	0	67	23	26	10	39	1.87
74615--74655	18	2.3	18	86	0	55	29	7	2	60	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74898--74941	23	1.9	23	85	0	61	29	25	27	18	1.98
76833--76890	20	2.7	20	84	10	62	22	20	22	34	1.97
80476--80507	13	2.6	13	90	9	50	34	9	0	56	1.32
80901--80939	20	2.0	20	89	0	60	17	25	23	33	1.96
91552--91610	21	2.8	21	89	0	91	16	22	32	28	1.96
91572--91621	21	2.4	21	86	0	64	24	18	32	26	1.97
93339--93386	24	2.0	24	100	0	96	41	8	8	41	1.65
93344--93396	24	2.2	24	86	0	70	49	3	9	37	1.53
94742--94809	34	2.2	31	82	12	77	32	11	7	48	1.67
94754--94821	34	2.0	34	94	5	120	30	17	8	42	1.80
95755--95785	16	1.9	16	93	0	53	54	16	9	19	1.68
103091--103132	2	21.0	2	100	0	84	50	0	0	50	1.00
105258--105424	30	5.8	30	72	13	125	16	15	10	57	1.64
105795--105825	5	6.2	5	92	0	53	16	0	3	80	0.83
108048--108128	40	2.0	40	97	0	153	29	24	13	32	1.94
115452--115584	20	6.5	20	70	14	74	36	22	19	21	1.95
115411--115568	62	2.6	59	78	8	190	40	21	18	18	1.92
115515--115770	20	12.6	20	74	10	162	38	24	18	18	1.93
115576--115726	61	2.5	61	87	2	205	38	23	18	19	1.93
115576--115767	41	4.7	40	85	3	242	38	24	18	18	1.93
116327--116377	20	2.5	20	87	0	66	54	21	9	13	1.67
116374--116441	33	2.1	33	88	0	100	45	23	20	10	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116437--116487	19	2.7	19	90	0	75	11	19	23	45	1.83
116485--116540	20	2.8	20	84	10	87	14	25	21	39	1.91
118243--118623	94	4.1	94	93	1	622	21	12	18	46	1.82
118671--118795	19	6.7	19	72	13	89	44	22	19	13	1.85
118743--118805	19	3.3	18	80	12	65	42	23	17	15	1.88
118802--118866	19	3.7	19	68	19	59	10	24	20	44	1.83
118805--118879	33	2.3	33	90	0	123	10	25	20	44	1.83
120944--121089	33	4.2	33	78	11	157	14	23	19	43	1.87
120940--121049	20	5.9	19	74	13	104	13	22	20	43	1.86
121036--121063	14	2.0	14	100	0	56	14	21	21	42	1.88
124510--124555	21	2.2	21	88	0	65	36	17	28	17	1.92
124888--125104	71	3.1	70	86	7	291	44	10	11	33	1.75
125189--125257	19	3.6	19	88	2	84	31	18	13	36	1.89
125370--125781	54	7.8	54	76	10	352	27	14	16	41	1.87
125370--125600	106	2.2	106	80	11	264	29	13	15	41	1.85
125429--125781	54	6.7	54	79	6	357	28	13	17	41	1.87
125562--125783	107	2.1	106	86	5	313	26	14	17	41	1.88
126274--126534	105	2.5	106	80	7	286	39	11	9	39	1.74

Tables:   1

The End!