genome.fa.s9265.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009265.1 Hibiscus syriacus cultivar Beakdansim tig00112919_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76718

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
489--518	15	2.1	15	93	6	53	16	26	20	36	1.93
7113--7242	65	2.0	65	90	3	208	29	13	16	40	1.88
15846--15937	47	2.0	47	80	4	105	41	25	14	19	1.89
16387--16532	60	2.4	58	80	7	159	31	25	4	38	1.77
17462--17971	35	14.7	35	73	13	313	31	11	26	30	1.91
17462--17713	106	2.4	102	84	4	306	30	10	27	30	1.90
17469--17840	141	2.7	138	80	7	369	31	11	26	30	1.91
17541--17807	106	2.5	103	79	8	231	31	11	26	29	1.92
17632--17942	137	2.3	135	80	7	326	31	12	27	29	1.92
19021--19067	23	2.0	23	91	0	76	29	14	17	38	1.89
18983--19105	62	2.0	60	92	3	201	39	13	17	30	1.88
19044--19151	38	2.8	38	97	2	200	42	13	16	26	1.86
24631--24926	35	8.7	35	75	9	231	29	12	27	30	1.93
24811--24915	31	3.0	36	77	18	123	29	14	26	29	1.95
34037--34081	21	2.1	21	88	8	65	37	4	4	53	1.41
34440--34487	23	2.1	23	88	0	69	35	12	18	33	1.89
34864--34917	23	2.5	20	75	18	54	42	18	1	37	1.61
34879--34941	23	2.7	23	90	0	90	38	19	6	36	1.77
37498--38727	184	6.7	184	98	0	2309	34	15	14	35	1.89
40089--40139	3	17.0	3	83	0	66	25	33	3	37	1.74
40089--40151	12	5.2	12	90	0	81	23	33	6	36	1.80
40093--40154	18	3.4	18	88	0	88	20	33	6	38	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40093--40154	6	10.3	6	83	0	61	20	33	6	38	1.79
41617--43230	198	8.1	198	95	1	2878	32	15	14	37	1.88
41617--43230	593	2.7	594	97	0	3025	32	15	14	37	1.88
43318--43373	19	2.9	19	97	0	103	53	10	3	32	1.53
45166--45231	33	2.0	33	87	0	96	24	45	1	28	1.62
47336--47388	24	2.2	24	83	6	63	26	7	13	52	1.66
47533--47579	20	2.4	19	79	10	58	19	17	8	55	1.67
47700--47745	19	2.3	20	86	13	69	17	17	10	54	1.70
60068--60172	51	2.0	52	96	1	194	28	30	18	22	1.97
64937--64998	22	2.8	21	76	9	61	32	8	19	40	1.81
64942--65103	81	2.0	81	96	0	297	37	9	20	33	1.84
67719--67760	11	3.6	11	77	22	50	23	28	21	26	1.99
72006--72053	23	2.1	23	88	0	69	35	12	18	33	1.89
72462--72533	23	3.2	23	86	2	92	40	22	4	33	1.73
72120--73147	419	2.5	428	94	4	1818	38	12	7	41	1.72
72892--72949	23	2.5	23	94	0	98	37	20	5	36	1.75
73098--73141	22	2.0	23	86	4	63	43	0	4	52	1.22
73362--73447	39	2.2	39	93	0	145	18	13	18	48	1.80
73706--73742	18	2.1	18	89	0	56	51	10	5	32	1.60
74156--74234	23	3.5	22	78	14	72	39	22	3	34	1.72
74171--74234	23	2.7	23	90	2	92	37	21	4	35	1.75

Tables:   1

The End!