genome.fa.s927.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000927.1 Hibiscus syriacus cultivar Beakdansim tig00001851_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106268

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6058--6128	35	2.0	36	91	2	117	38	19	14	28	1.91
12121--12180	29	2.1	29	100	0	120	26	13	16	43	1.85
15084--15124	20	2.0	20	86	9	57	39	9	7	43	1.65
19502--19532	15	2.1	15	94	5	55	19	19	19	41	1.90
22148--22313	76	2.2	76	93	0	278	21	30	24	22	1.99
28053--28114	23	2.9	21	85	7	81	20	35	25	17	1.95
28096--28135	21	1.9	21	89	0	62	25	40	25	10	1.86
38427--38485	29	2.0	29	100	0	118	23	13	13	49	1.78
43115--43173	29	2.0	29	100	0	118	23	13	13	49	1.78
48991--49077	29	3.0	29	94	3	156	45	13	16	24	1.83
48991--49077	30	2.9	30	96	1	158	45	13	16	24	1.83
57946--57990	21	2.1	21	87	0	63	31	28	24	15	1.96
58570--58604	18	1.9	18	88	11	54	54	5	17	22	1.64
58661--58704	22	2.0	22	86	4	63	45	0	22	31	1.53
59421--59871	149	3.0	149	97	0	834	28	17	19	34	1.95
59850--59894	23	2.0	23	86	0	63	20	24	28	26	1.99
67883--67927	21	2.1	21	87	0	63	31	28	24	15	1.96
68507--68541	18	1.9	18	88	11	54	54	5	17	22	1.64
68598--68641	22	2.0	22	86	4	63	45	0	22	31	1.53
69353--69805	149	3.0	149	98	0	861	28	17	19	34	1.95
69784--69828	23	2.0	23	86	0	63	20	24	28	26	1.99
75444--75480	11	3.5	10	89	10	56	2	18	0	78	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81255--81281	12	2.2	12	100	0	54	11	29	14	44	1.80
85645--85673	10	2.9	10	100	0	58	48	10	10	31	1.71
86306--86330	2	12.5	2	100	0	50	48	0	0	52	1.00
91178--91216	20	2.0	20	89	0	60	35	33	10	20	1.86
91244--91296	20	2.7	20	85	2	72	30	28	18	22	1.98
99837--99927	45	2.0	46	82	2	112	29	20	18	30	1.97
105238--105281	23	2.0	22	82	13	54	47	6	0	45	1.29

Tables:   1

The End!