genome.fa.s9271.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009271.1 Hibiscus syriacus cultivar Beakdansim tig00112941_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66580

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5741--5870	39	3.4	37	74	17	124	49	5	4	40	1.46
5809--5842	15	2.3	15	94	0	59	50	5	2	41	1.42
5741--5904	75	2.1	78	87	5	237	48	4	5	41	1.48
6103--6174	26	2.7	27	79	10	69	47	5	5	41	1.50
6257--6296	7	5.7	7	81	0	53	42	35	2	20	1.65
6236--6300	21	3.1	21	78	8	60	43	27	1	27	1.64
6328--6358	16	1.9	16	100	0	62	48	0	6	45	1.28
6570--6701	21	6.2	21	70	16	83	40	6	6	46	1.55
6549--6648	21	4.8	20	76	12	69	36	6	10	48	1.61
6684--6743	14	4.2	14	73	12	50	41	6	3	48	1.46
6805--6894	24	3.8	23	78	10	92	52	1	2	44	1.20
7494--7579	25	3.4	25	90	3	102	47	17	9	25	1.77
7506--7581	13	5.9	14	69	18	67	48	15	9	26	1.75
8131--8170	11	3.5	11	83	6	53	40	7	5	47	1.54
9009--9107	47	2.1	48	96	1	182	18	25	22	34	1.96
10149--10222	36	2.1	35	82	7	87	35	20	4	40	1.71
11418--11470	24	2.2	24	100	0	106	32	32	0	35	1.58
15209--15251	17	2.5	17	81	7	52	60	0	13	25	1.34
15837--15885	12	3.9	13	75	20	50	69	4	6	20	1.27
15838--15894	24	2.4	24	83	11	73	71	3	7	17	1.22
17875--17919	22	2.0	22	100	0	90	28	40	8	22	1.84
19129--19154	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20464--20503	20	2.0	21	85	5	55	55	0	0	45	0.99
22973--23007	3	11.7	3	100	0	70	0	34	0	65	0.93
24208--24289	16	5.7	15	75	22	79	32	9	21	35	1.87
24208--24292	12	6.1	14	74	20	72	32	9	22	35	1.86
24200--24294	43	2.2	43	96	1	174	33	8	23	34	1.85
24365--24461	46	2.1	46	94	0	167	16	25	24	32	1.96
24365--24466	23	4.4	23	87	0	132	15	24	26	33	1.95
32816--32877	23	2.9	21	85	7	81	20	35	25	17	1.95
32859--32898	21	1.9	21	85	10	55	22	45	22	10	1.82
36382--36406	9	2.8	9	100	0	50	76	0	0	24	0.80
36358--36412	23	2.4	24	78	9	69	69	3	0	27	1.05
36405--36453	13	3.6	13	83	8	62	59	10	0	30	1.31
36453--36519	21	3.3	21	64	8	57	70	8	1	19	1.22
36925--36976	21	2.5	21	75	12	61	26	15	28	28	1.96
38849--38893	6	7.5	6	90	7	65	28	2	68	0	1.01
40509--40560	20	2.7	20	85	8	63	50	15	7	26	1.71
40797--41205	20	20.5	20	84	5	486	35	25	18	20	1.95
41878--41924	24	2.0	24	87	8	69	25	14	21	38	1.92
42099--42123	12	2.1	12	100	0	50	72	0	28	0	0.86
44429--44754	19	18.4	19	80	15	405	47	17	20	14	1.82
44429--44754	33	9.2	34	82	13	321	47	17	20	14	1.82
44457--44776	161	2.0	157	93	3	552	46	16	21	14	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44457--44776	52	6.0	52	93	4	550	46	16	21	14	1.83
44783--44884	19	5.6	19	85	12	151	14	23	17	44	1.86
44991--45027	14	2.6	14	91	0	65	45	21	0	32	1.52
45022--45094	12	6.0	12	67	20	53	57	16	1	24	1.47
45008--45080	38	1.9	38	97	0	137	53	16	1	28	1.51
46894--47028	19	7.6	19	76	16	137	45	24	19	10	1.81
46950--47006	14	3.7	14	77	20	60	45	24	21	8	1.80
46931--47023	33	2.8	33	98	0	177	47	22	20	9	1.79
46894--47028	52	2.5	54	75	18	131	45	24	19	10	1.81
47024--47152	19	7.3	19	75	17	125	8	17	28	45	1.77
47024--47115	33	2.8	33	93	3	150	7	18	28	45	1.76
47196--47573	92	4.1	93	97	2	726	46	18	12	22	1.83
49278--49367	14	5.7	14	74	23	81	42	23	25	8	1.83
49270--49384	33	3.5	33	95	0	212	45	20	24	9	1.81
49277--49389	19	6.8	18	72	23	88	43	22	24	9	1.83
49401--49455	14	3.6	14	73	21	56	9	27	23	40	1.85
49576--49646	33	2.2	33	92	0	115	47	18	22	11	1.80
49826--49880	22	2.5	22	81	0	74	20	16	40	23	1.91
50026--50219	20	9.6	20	82	5	221	19	19	25	35	1.95
50026--50219	60	3.2	60	83	0	253	19	19	25	35	1.95
50212--50288	21	3.7	20	70	13	57	27	16	23	32	1.96
50274--50325	20	2.6	20	96	0	95	21	13	26	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50576--50615	21	1.9	21	84	0	53	32	10	7	50	1.64
50650--50688	18	2.1	19	90	4	62	58	5	2	33	1.33
51938--52115	90	2.0	90	93	2	304	46	7	10	35	1.67
53479--53552	30	2.4	31	78	10	80	55	12	6	25	1.61
64644--64697	26	2.1	26	82	6	65	50	5	3	40	1.44

Tables:   1

The End!