Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009273.1 Hibiscus syriacus cultivar Beakdansim tig00112949_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 227370
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.33
Found at i:11388 original size:5 final size:5
Alignment explanation
Indices: 11378--11405 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
11368 ATAGTTTATT
11378 ATAAA ATAAA ATAAA ATAAA ATAAA ATA
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATA
11406 TTAACCCTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (5 bp):
ATAAA
Found at i:12451 original size:16 final size:16
Alignment explanation
Indices: 12432--12467 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
12422 ATACATTCTA
12432 TTAATCTTTTATTCCT
1 TTAATCTTTTATTCCT
*
12448 TTAATCTTTTATTTCT
1 TTAATCTTTTATTCCT
12464 TTAA
1 TTAA
12468 CCAAACACTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.22, C:0.14, G:0.00, T:0.64
Consensus pattern (16 bp):
TTAATCTTTTATTCCT
Found at i:13712 original size:6 final size:6
Alignment explanation
Indices: 13703--13729 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
13693 ATAATCCAAC
13703 TTCTAG TTCTAG TTCTAG TTCTAG TTC
1 TTCTAG TTCTAG TTCTAG TTCTAG TTC
13730 CTTCCTTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.19, G:0.15, T:0.52
Consensus pattern (6 bp):
TTCTAG
Found at i:20865 original size:6 final size:6
Alignment explanation
Indices: 20854--20878 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
20844 AGTGAGAAGG
20854 GTGGAC GTGGAC GTGGAC GTGGAC G
1 GTGGAC GTGGAC GTGGAC GTGGAC G
20879 AGGAATGGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.16, G:0.52, T:0.16
Consensus pattern (6 bp):
GTGGAC
Found at i:21809 original size:21 final size:21
Alignment explanation
Indices: 21783--21824 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
21773 GGTGAAAAAA
21783 CCGGATC-TATTTTTATCCGAT
1 CCGGATCGT-TTTTTATCCGAT
21804 CCGGATCGGTTTTTTATCCGA
1 CCGGATC-GTTTTTTATCCGA
21825 CTTTGTGCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 7 0.37
22 11 0.58
23 1 0.05
ACGTcount: A:0.17, C:0.24, G:0.19, T:0.40
Consensus pattern (21 bp):
CCGGATCGTTTTTTATCCGAT
Found at i:23447 original size:16 final size:16
Alignment explanation
Indices: 23426--23460 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
23416 TTTTTACATG
*
23426 AACCAAAATCCTATTA
1 AACCAAAATCATATTA
*
23442 AACCAAAATTATATTA
1 AACCAAAATCATATTA
23458 AAC
1 AAC
23461 ATATAAATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.54, C:0.20, G:0.00, T:0.26
Consensus pattern (16 bp):
AACCAAAATCATATTA
Found at i:24793 original size:38 final size:37
Alignment explanation
Indices: 24708--24794 Score: 122
Period size: 38 Copynumber: 2.4 Consensus size: 37
24698 AAAAATAATT
*
24708 ATTATATATATATATAATATTAATAAATTTAATTTAA
1 ATTATATATATACATAATATTAATAAATTTAATTTAA
* * *
24745 ATTAAAATATATACATAATATTTATATATTTAATTTAA
1 ATT-ATATATATACATAATATTAATAAATTTAATTTAA
24783 A-TATATATATAC
1 ATTATATATATAC
24795 CCGGCCCAAT
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
36 9 0.20
37 4 0.09
38 31 0.70
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (37 bp):
ATTATATATATACATAATATTAATAAATTTAATTTAA
Found at i:44247 original size:21 final size:20
Alignment explanation
Indices: 44200--44248 Score: 55
Period size: 21 Copynumber: 2.5 Consensus size: 20
44190 TTAACTAATC
44200 TATTAT-TTTTAATAAATAA
1 TATTATATTTTAATAAATAA
** *
44219 TAAAATATTTGTAATTAATAA
1 TATTATATTT-TAATAAATAA
44240 TATTATATT
1 TATTATATT
44249 AATAAAAAAG
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
19 4 0.17
20 3 0.13
21 16 0.70
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (20 bp):
TATTATATTTTAATAAATAA
Found at i:44438 original size:71 final size:74
Alignment explanation
Indices: 44349--44487 Score: 203
Period size: 77 Copynumber: 1.9 Consensus size: 74
44339 GTAATGAGTT
* *
44349 GAGCATAACGAGCAACGAGTCGAGT-T-GAGTAGC-AAATTTTTTAACGAGCACGAGTCGAGCAC
1 GAGCATAAAGAGCAACGAGTCGAGTGTCGAGTAGCAAAATTTTTTAACGAGCACGAGTCAAGCAC
44411 AATTTTAAC
66 AATTTTAAC
*
44420 GAGCTTAAAGAGCAACGAGTCGAGTCGAGTCGAGTAGCAAAATTTTTTAACGAGCACGAGTCAAG
1 GAGCATAAAGAGCAACGAGTCGAGT---GTCGAGTAGCAAAATTTTTTAACGAGCACGAGTCAAG
44485 CAC
63 CAC
44488 TGCTCAACTC
Statistics
Matches: 59, Mismatches: 3, Indels: 6
0.87 0.04 0.09
Matches are distributed among these distances:
71 23 0.39
75 1 0.02
76 7 0.12
77 28 0.47
ACGTcount: A:0.35, C:0.19, G:0.25, T:0.21
Consensus pattern (74 bp):
GAGCATAAAGAGCAACGAGTCGAGTGTCGAGTAGCAAAATTTTTTAACGAGCACGAGTCAAGCAC
AATTTTAAC
Found at i:62102 original size:12 final size:13
Alignment explanation
Indices: 62085--62113 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
62075 TTTACTTACG
62085 AAAATTAAAA-TT
1 AAAATTAAAATTT
62097 AAAATTAAAATTT
1 AAAATTAAAATTT
62110 AAAA
1 AAAA
62114 ACCTAATTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (13 bp):
AAAATTAAAATTT
Found at i:62505 original size:32 final size:27
Alignment explanation
Indices: 62436--62507 Score: 81
Period size: 27 Copynumber: 2.5 Consensus size: 27
62426 ACTCAACATG
*
62436 ATTTTAAAGTACTATTAAAAATATTTA
1 ATTTTAAAGTACTATTAAAAATATTAA
*
62463 ATTTTCAAGTACTATTCAAAATAAATATTGAA
1 ATTTTAAAGTACTATT---AA-AAATATT-AA
62495 ATTTTAAAGTACT
1 ATTTTAAAGTACT
62508 TAATTTTTCA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
27 15 0.41
30 2 0.05
31 7 0.19
32 13 0.35
ACGTcount: A:0.46, C:0.07, G:0.06, T:0.42
Consensus pattern (27 bp):
ATTTTAAAGTACTATTAAAAATATTAA
Found at i:63485 original size:20 final size:20
Alignment explanation
Indices: 63428--63490 Score: 56
Period size: 20 Copynumber: 3.0 Consensus size: 20
63418 ATTATTATTA
*
63428 TTTTAATTAAATCTATATTTTT
1 TTTTAA-TAAATATA-ATTTTT
* *
63450 ATTGAATAAA-ATTAATTTTT
1 TTTTAATAAATA-TAATTTTT
63470 TTTTAATAAATATAATATTTT
1 TTTTAATAAATATAAT-TTTT
63491 GAATTGGGTC
Statistics
Matches: 33, Mismatches: 5, Indels: 7
0.73 0.11 0.16
Matches are distributed among these distances:
20 18 0.55
21 11 0.33
22 4 0.12
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.57
Consensus pattern (20 bp):
TTTTAATAAATATAATTTTT
Found at i:66263 original size:22 final size:23
Alignment explanation
Indices: 66220--66263 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
66210 ATTTTTAATT
* *
66220 AAATACATATTTTTATTGAATAA
1 AAATACATATTTTTAGTAAATAA
66243 AAATA-ATATTTTTAGTAAATA
1 AAATACATATTTTTAGTAAATA
66264 TATTATTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.50, C:0.02, G:0.05, T:0.43
Consensus pattern (23 bp):
AAATACATATTTTTAGTAAATAA
Found at i:76291 original size:30 final size:30
Alignment explanation
Indices: 76247--76311 Score: 85
Period size: 30 Copynumber: 2.2 Consensus size: 30
76237 GCAGCTCCAT
* * *
76247 AGGTCGTCAAGTGCTTCTGGAGACCTATGG
1 AGGTCGACAAGTGCTCCCGGAGACCTATGG
*
76277 AGGTCGACATGTGCTCCCGGAGACCTATGG
1 AGGTCGACAAGTGCTCCCGGAGACCTATGG
*
76307 CGGTC
1 AGGTC
76312 ACTGTAACAA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.18, C:0.25, G:0.34, T:0.23
Consensus pattern (30 bp):
AGGTCGACAAGTGCTCCCGGAGACCTATGG
Found at i:82598 original size:16 final size:16
Alignment explanation
Indices: 82574--82607 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
82564 TTCATTAAGC
82574 ACATCTGAATCATTCA
1 ACATCTGAATCATTCA
*
82590 ACATTTGAATCATTCA
1 ACATCTGAATCATTCA
82606 AC
1 AC
82608 TAGAAAACTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.38, C:0.24, G:0.06, T:0.32
Consensus pattern (16 bp):
ACATCTGAATCATTCA
Found at i:90900 original size:19 final size:18
Alignment explanation
Indices: 90861--90913 Score: 58
Period size: 18 Copynumber: 3.1 Consensus size: 18
90851 TAAGTGTTTA
*
90861 ATTTT-TTATTTT-AGAT
1 ATTTTATTATTTTAAAAT
*
90877 A-TTTATTTTTATTAAAAT
1 ATTTTATTATT-TTAAAAT
90895 ATTTTATTATTTTAAAAT
1 ATTTTATTATTTTAAAAT
90913 A
1 A
90914 AAGGAGCGAT
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
15 3 0.10
16 5 0.17
17 2 0.07
18 12 0.40
19 8 0.27
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (18 bp):
ATTTTATTATTTTAAAAT
Found at i:91808 original size:17 final size:16
Alignment explanation
Indices: 91786--91818 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
91776 AAACCGATCC
91786 AAAAAATCGAAAACCGA
1 AAAAAATCG-AAACCGA
91803 AAAAAATCGAAACCGA
1 AAAAAATCGAAACCGA
91819 TTTAGTATGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.64, C:0.18, G:0.12, T:0.06
Consensus pattern (16 bp):
AAAAAATCGAAACCGA
Found at i:93681 original size:2 final size:2
Alignment explanation
Indices: 93676--93801 Score: 74
Period size: 2 Copynumber: 64.5 Consensus size: 2
93666 TTTGGTAAAA
* *
93676 AT AT AT AT A- AT AGT AT AT AT A- AT AT AGC AT AT A- AT AT ACC
1 AT AT AT AT AT AT A-T AT AT AT AT AT AT A-T AT AT AT AT AT A-T
*
93716 AT AT TT AT A- AT AT A- AT AT AT AT AT AT ACT AT ACT AT AT A- AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT A-T AT AT AT AT
* *
93757 AT A- AT AT A- AT AT AT A- AT AT AC A- AA AT AT AT ACT AT AT ACT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT A-T
93797 AT AT A
1 AT AT A
93802 CTATCTCGGA
Statistics
Matches: 99, Mismatches: 8, Indels: 34
0.70 0.06 0.24
Matches are distributed among these distances:
1 10 0.10
2 77 0.78
3 12 0.12
ACGTcount: A:0.52, C:0.06, G:0.02, T:0.40
Consensus pattern (2 bp):
AT
Found at i:93692 original size:12 final size:11
Alignment explanation
Indices: 93676--93799 Score: 94
Period size: 12 Copynumber: 10.8 Consensus size: 11
93666 TTTGGTAAAA
93676 ATATATATAAT
1 ATATATATAAT
93687 AGTATATATAAT
1 A-TATATATAAT
*
93699 ATAGCATATAAT
1 ATA-TATATAAT
* *
93711 ATACCATAT-TT
1 ATA-TATATAAT
93722 ATA-ATATAAT
1 ATATATATAAT
93732 ATATATATATACT
1 ATATATATA-A-T
93745 ATACTATATAAT
1 ATA-TATATAAT
93757 ATA-ATATAAT
1 ATATATATAAT
93767 ATATAATATACA-
1 ATAT-ATATA-AT
* *
93779 AAATATATACT
1 ATATATATAAT
93790 ATATACTATA
1 ATATA-TATA
93800 TACTATCTCG
Statistics
Matches: 94, Mismatches: 7, Indels: 23
0.76 0.06 0.19
Matches are distributed among these distances:
9 4 0.04
10 14 0.15
11 21 0.22
12 43 0.46
13 6 0.06
14 6 0.06
ACGTcount: A:0.52, C:0.06, G:0.02, T:0.40
Consensus pattern (11 bp):
ATATATATAAT
Found at i:93694 original size:10 final size:9
Alignment explanation
Indices: 93675--93801 Score: 66
Period size: 9 Copynumber: 13.1 Consensus size: 9
93665 TTTTGGTAAA
93675 AATATATAT
1 AATATATAT
93684 AATAGTATAT
1 AATA-TATAT
93694 -ATA-ATAT
1 AATATATAT
93701 AGCATATAATAT
1 A--ATAT-ATAT
*
93713 ACCATATTTAT
1 A--ATATATAT
93724 AATATA-AT
1 AATATATAT
93732 ATATATATAT
1 A-ATATATAT
93742 ACTATACTATAT
1 A--ATA-TATAT
93754 AATATA-AT
1 AATATATAT
93762 -ATAATATAT
1 AAT-ATATAT
* *
93771 AATATACAA
1 AATATATAT
93780 AATATATACT
1 AATATATA-T
93790 ATATACTATAT
1 A-ATA-TATAT
93801 A
1 A
93802 CTATCTCGGA
Statistics
Matches: 95, Mismatches: 7, Indels: 30
0.72 0.05 0.23
Matches are distributed among these distances:
7 6 0.06
8 8 0.08
9 31 0.33
10 17 0.18
11 13 0.14
12 20 0.21
ACGTcount: A:0.52, C:0.06, G:0.02, T:0.40
Consensus pattern (9 bp):
AATATATAT
Found at i:93776 original size:5 final size:5
Alignment explanation
Indices: 93675--93769 Score: 72
Period size: 5 Copynumber: 18.2 Consensus size: 5
93665 TTTTGGTAAA
*
93675 AATAT -ATAT AATAGT ATATAT AATAT AGCATAT AATAT ACCATAT -TTAT
1 AATAT AATAT AATA-T A-ATAT AATAT A--ATAT AATAT A--ATAT AATAT
*
93724 AATAT AATAT -ATAT -ATAT ACTAT ACTATAT AATAT AATAT AATAT A
1 AATAT AATAT AATAT AATAT AATAT A--ATAT AATAT AATAT AATAT A
93770 TAATATACAA
Statistics
Matches: 75, Mismatches: 4, Indels: 22
0.74 0.04 0.22
Matches are distributed among these distances:
4 15 0.20
5 40 0.53
6 4 0.05
7 16 0.21
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.41
Consensus pattern (5 bp):
AATAT
Found at i:93803 original size:7 final size:7
Alignment explanation
Indices: 93725--93805 Score: 52
Period size: 7 Copynumber: 12.3 Consensus size: 7
93715 CATATTTATA
*
93725 ATATAAT
1 ATATACT
93732 ATATA-T
1 ATATACT
93738 ATATAC-
1 ATATACT
93744 -TATACT
1 ATATACT
*
93750 ATATAAT
1 ATATACT
93757 ATAATA-T
1 AT-ATACT
93764 AATATA-T
1 -ATATACT
93771 AATATAC-
1 -ATATACT
*
93778 A-A-AAT
1 ATATACT
93783 ATATACT
1 ATATACT
93790 ATATACT
1 ATATACT
93797 ATATACT
1 ATATACT
93804 AT
1 AT
93806 CTCGGAAGAA
Statistics
Matches: 62, Mismatches: 3, Indels: 18
0.75 0.04 0.22
Matches are distributed among these distances:
4 1 0.02
5 7 0.11
6 8 0.13
7 41 0.66
8 5 0.08
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (7 bp):
ATATACT
Found at i:94294 original size:93 final size:93
Alignment explanation
Indices: 94135--94321 Score: 365
Period size: 93 Copynumber: 2.0 Consensus size: 93
94125 ACCTTTGCAA
94135 TAGTAATAATAAAAATAATGAGAATAAATTAAGACGACCCCGAATTACTCAATCAAAATATTATT
1 TAGTAATAATAAAAATAATGAGAATAAATTAAGACGACCCCGAATTACTCAATCAAAATATTATT
94200 ATTTTTATTTAAAATAACTAGAATATCT
66 ATTTTTATTTAAAATAACTAGAATATCT
*
94228 TAGTAATAATAAAAATAATGAGAATAAATTAAGACGACCCCGAATTACTCCATCAAAATATTATT
1 TAGTAATAATAAAAATAATGAGAATAAATTAAGACGACCCCGAATTACTCAATCAAAATATTATT
94293 ATTTTTATTTAAAATAACTAGAATATCT
66 ATTTTTATTTAAAATAACTAGAATATCT
94321 T
1 T
94322 TAAAATATAT
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
93 93 1.00
ACGTcount: A:0.48, C:0.11, G:0.07, T:0.34
Consensus pattern (93 bp):
TAGTAATAATAAAAATAATGAGAATAAATTAAGACGACCCCGAATTACTCAATCAAAATATTATT
ATTTTTATTTAAAATAACTAGAATATCT
Found at i:104363 original size:4 final size:4
Alignment explanation
Indices: 104354--104408 Score: 56
Period size: 4 Copynumber: 13.8 Consensus size: 4
104344 ATGATTTATG
* * * * * *
104354 CATA CATA CATG CATA CATG CATA CATG CATA CATG CATA CATG CATC
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
104402 CATA CAT
1 CATA CAT
104409 TAATTATTGT
Statistics
Matches: 40, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
4 40 1.00
ACGTcount: A:0.38, C:0.27, G:0.09, T:0.25
Consensus pattern (4 bp):
CATA
Found at i:104368 original size:12 final size:12
Alignment explanation
Indices: 104351--104408 Score: 71
Period size: 12 Copynumber: 4.8 Consensus size: 12
104341 GGTATGATTT
104351 ATGCATACATAC
1 ATGCATACATAC
*
104363 ATGCATACATGC
1 ATGCATACATAC
* *
104375 ATACATGCATAC
1 ATGCATACATAC
*
104387 ATGCATACATGC
1 ATGCATACATAC
*
104399 ATCCATACAT
1 ATGCATACAT
104409 TAATTATTGT
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 38 1.00
ACGTcount: A:0.38, C:0.26, G:0.10, T:0.26
Consensus pattern (12 bp):
ATGCATACATAC
Found at i:104371 original size:8 final size:8
Alignment explanation
Indices: 104358--104400 Score: 86
Period size: 8 Copynumber: 5.4 Consensus size: 8
104348 TTTATGCATA
104358 CATACATG
1 CATACATG
104366 CATACATG
1 CATACATG
104374 CATACATG
1 CATACATG
104382 CATACATG
1 CATACATG
104390 CATACATG
1 CATACATG
104398 CAT
1 CAT
104401 CCATACATTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 35 1.00
ACGTcount: A:0.37, C:0.26, G:0.12, T:0.26
Consensus pattern (8 bp):
CATACATG
Found at i:128033 original size:3 final size:3
Alignment explanation
Indices: 128025--128067 Score: 77
Period size: 3 Copynumber: 14.3 Consensus size: 3
128015 TTAATATATT
*
128025 TAA TAA TAA TAA TAA TAA TGA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
128068 GATATGGGTA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:128591 original size:113 final size:113
Alignment explanation
Indices: 128389--129054 Score: 1208
Period size: 113 Copynumber: 5.9 Consensus size: 113
128379 AGCATCAAAC
*
128389 AAAGGTTGAACAAACTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
*
128454 ATGAACTTTCTCTGGAAAAGATGATCCATCAAATGATGAATTCATGTA
66 ATGAACTTTCTCTGGAAAAGATGATCCATCAAATGATGAATTCAGGTA
*
128502 AAAGGTTGAACAAATTCTTCTCATCATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
* * *
128567 ATGAACTTTTTCTGGAAAAAATGATCCATCAAGTGATGAATTCAGGTA
66 ATGAACTTTCTCTGGAAAAGATGATCCATCAAATGATGAATTCAGGTA
128615 AAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
128680 ATGAACTTTCTCTGGAAAAGATGATCCATCAAATGATGAATTCAGGTA
66 ATGAACTTTCTCTGGAAAAGATGATCCATCAAATGATGAATTCAGGTA
128728 AAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
128793 ATGAACTTTCTCTGGAAAAGATGATCCATCAAATGATGAATTCAGGTA
66 ATGAACTTTCTCTGGAAAAGATGATCCATCAAATGATGAATTCAGGTA
*
128841 AAAGGTTGAACAAATTCTTCTCATTATGAACTTCTCCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
* * *
128906 ATGAACTTTTTCTGGAAAAAATGATCCATCAAGTGATGAATTCAGGTA
66 ATGAACTTTCTCTGGAAAAGATGATCCATCAAATGATGAATTCAGGTA
128954 AAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
* * *
129019 ATGAAC-TTCTCTGGAAAAGCTAACCCATCAAATGAT
66 ATGAACTTTCTCTGGAAAAGATGATCCATCAAATGAT
129055 AGATTTGAAT
Statistics
Matches: 532, Mismatches: 21, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
112 24 0.05
113 508 0.95
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (113 bp):
AAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
ATGAACTTTCTCTGGAAAAGATGATCCATCAAATGATGAATTCAGGTA
Found at i:129771 original size:83 final size:83
Alignment explanation
Indices: 129674--129854 Score: 301
Period size: 83 Copynumber: 2.2 Consensus size: 83
129664 TTCATCTTTT
* *
129674 AATTCCAACGATTGGTTCTGTCC-AACCAGATTAGATAACTCAAAGAACACTTCCAGAAGATGCT
1 AATT-CAATGATTGGTTCTG-CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCT
129738 ATTGGCAAATTCATCTTCCA
64 ATTGGCAAATTCATCTTCCA
* *
129758 AATTCAATGATTGGTTCTGCCAAATCAGATCAGATAACTCAAAGAACACTTCTAGAAGATGCTAT
1 AATTCAATGATTGGTTCTGCCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTAT
129823 TGGCAAATTCATCTTCCA
66 TGGCAAATTCATCTTCCA
129841 AATTCAATGATTGG
1 AATTCAATGATTGG
129855 ACTAAGATAT
Statistics
Matches: 92, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
82 2 0.02
83 86 0.93
84 4 0.04
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.29
Consensus pattern (83 bp):
AATTCAATGATTGGTTCTGCCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTAT
TGGCAAATTCATCTTCCA
Found at i:130644 original size:16 final size:16
Alignment explanation
Indices: 130623--130662 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
130613 GAATTTCCAA
*
130623 AAATAAATTG-ACTCTT
1 AAATAAATTGAACT-TG
130639 AAATAAATTGAACTTG
1 AAATAAATTGAACTTG
130655 AAATAAAT
1 AAATAAAT
130663 AGAATTGTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 19 0.86
17 3 0.14
ACGTcount: A:0.53, C:0.07, G:0.07, T:0.33
Consensus pattern (16 bp):
AAATAAATTGAACTTG
Found at i:131015 original size:16 final size:15
Alignment explanation
Indices: 130978--131046 Score: 72
Period size: 15 Copynumber: 4.5 Consensus size: 15
130968 CCTTGACCCC
130978 CTTTCTTTTTCTTC-T
1 CTTT-TTTTTCTTCTT
130993 CTTTTTTTTTCATT-TT
1 C-TTTTTTTTC-TTCTT
131009 CTATTTTTTT-TTCTT
1 CT-TTTTTTTCTTCTT
131024 CTCTTTTTTTCTTCTT
1 CT-TTTTTTTCTTCTT
131040 CTTTTTT
1 CTTTTTT
131047 CTTTTCTCTT
Statistics
Matches: 47, Mismatches: 1, Indels: 12
0.78 0.02 0.20
Matches are distributed among these distances:
14 2 0.04
15 24 0.51
16 21 0.45
ACGTcount: A:0.03, C:0.19, G:0.00, T:0.78
Consensus pattern (15 bp):
CTTTTTTTTCTTCTT
Found at i:131015 original size:18 final size:16
Alignment explanation
Indices: 130983--131053 Score: 67
Period size: 16 Copynumber: 4.4 Consensus size: 16
130973 ACCCCCTTTC
*
130983 TTTTTCTTCTC-TTTT
1 TTTTTCTTTTCTTTTT
130998 TTTTTCATTTTCTATTTT
1 TTTTTC-TTTTCT-TTTT
*
131016 TTTTTCTTCTCTTTTT
1 TTTTTCTTTTCTTTTT
*
131032 TTCTTC--TTCTTTTT
1 TTTTTCTTTTCTTTTT
131046 TCTTTTCT
1 T-TTTTCT
131054 CTTCAAGCAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
14 8 0.17
15 10 0.22
16 13 0.28
17 5 0.11
18 10 0.22
ACGTcount: A:0.03, C:0.18, G:0.00, T:0.79
Consensus pattern (16 bp):
TTTTTCTTTTCTTTTT
Found at i:131018 original size:31 final size:29
Alignment explanation
Indices: 130978--131056 Score: 88
Period size: 31 Copynumber: 2.6 Consensus size: 29
130968 CCTTGACCCC
130978 CTTTCTTTTTCTTCTCTTTTTTTTTCATT-TT
1 CTTT-TTTTT-TTCTCTTTTTTTTTC-TTCTT
*
131009 CTATTTTTTTTTCTTCTCTTTTTTTCTTCTT
1 CT-TTTTTTTTTC-TCTTTTTTTTTCTTCTT
131040 CTTTTTTCTTTTCTCTT
1 CTTTTTT-TTTTCTCTT
131057 CAAGCATAAT
Statistics
Matches: 42, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
30 13 0.31
31 27 0.64
32 2 0.05
ACGTcount: A:0.03, C:0.20, G:0.00, T:0.77
Consensus pattern (29 bp):
CTTTTTTTTTTCTCTTTTTTTTTCTTCTT
Found at i:131030 original size:13 final size:13
Alignment explanation
Indices: 131014--131056 Score: 59
Period size: 14 Copynumber: 3.2 Consensus size: 13
131004 ATTTTCTATT
131014 TTTTTTTCTTCTC
1 TTTTTTTCTTCTC
131027 TTTTTTTCTTCTTC
1 TTTTTTTCTTC-TC
*
131041 TTTTTTCTTTTCTC
1 TTTTTT-TCTTCTC
131055 TT
1 TT
131057 CAAGCATAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
13 11 0.41
14 12 0.44
15 4 0.15
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (13 bp):
TTTTTTTCTTCTC
Found at i:131057 original size:33 final size:33
Alignment explanation
Indices: 130979--131057 Score: 101
Period size: 33 Copynumber: 2.4 Consensus size: 33
130969 CTTGACCCCC
130979 TTTCTTTTTCTTCTCTTTTTTTTTCATTTTCTA
1 TTTCTTTTTCTTCTCTTTTTTTTTCATTTTCTA
*
131012 TTTTTTTTTCTTCTCTTTTTTTCTTC-TTCTT-T-
1 TTTCTTTTTCTTCTCTTTTTTT-TTCATT-TTCTA
131044 TTTCTTTTCTCTTC
1 TTTCTTTT-TCTTC
131058 AAGCATAATA
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
32 7 0.17
33 29 0.71
34 5 0.12
ACGTcount: A:0.03, C:0.20, G:0.00, T:0.77
Consensus pattern (33 bp):
TTTCTTTTTCTTCTCTTTTTTTTTCATTTTCTA
Found at i:138332 original size:14 final size:15
Alignment explanation
Indices: 138315--138347 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
138305 TATTTTTTTC
138315 AAATTTTAA-TTAAT
1 AAATTTTAACTTAAT
138329 AAATTTTAACTTAAT
1 AAATTTTAACTTAAT
138344 AAAT
1 AAAT
138348 AATAATTCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (15 bp):
AAATTTTAACTTAAT
Found at i:141662 original size:13 final size:15
Alignment explanation
Indices: 141640--141676 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
141630 TTTGACAGAA
141640 AAAT-AAATAC-TG-
1 AAATAAAATACTTGC
141652 AAATAAAATACTTGC
1 AAATAAAATACTTGC
141667 AAATAAAATA
1 AAATAAAATA
141677 AAACATATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 4 0.18
13 6 0.27
14 2 0.09
15 10 0.45
ACGTcount: A:0.62, C:0.08, G:0.05, T:0.24
Consensus pattern (15 bp):
AAATAAAATACTTGC
Found at i:141715 original size:18 final size:17
Alignment explanation
Indices: 141667--141717 Score: 50
Period size: 18 Copynumber: 2.9 Consensus size: 17
141657 AAATACTTGC
*
141667 AAATAAAATAAAACATAT
1 AAAT-AAATAAAAAATAT
*
141685 AAAT-ATTATAAAAATAAT
1 AAATAAATA-AAAAAT-AT
141703 AAATAAATAAAAAAT
1 AAATAAATAAAAAAT
141718 TTGAAAAGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
16 3 0.11
17 5 0.19
18 16 0.59
19 3 0.11
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (17 bp):
AAATAAATAAAAAATAT
Found at i:143918 original size:3 final size:3
Alignment explanation
Indices: 143910--143979 Score: 122
Period size: 3 Copynumber: 23.3 Consensus size: 3
143900 TTAATATATT
* *
143910 TAA TAA TAA TAA TAA TGA TAA TAA TAA TAA TAA TGA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
143958 TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA T
143980 GATATGGGTA
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 63 1.00
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:145020 original size:15 final size:17
Alignment explanation
Indices: 144979--145021 Score: 54
Period size: 19 Copynumber: 2.5 Consensus size: 17
144969 ATCTTATTTG
144979 AAAATTATTTAAAGGAAC
1 AAAATTATTTAAA-GAAC
144997 AATAATTATTTAAA-AA-
1 AA-AATTATTTAAAGAAC
145013 AAAATTATT
1 AAAATTATT
145022 GGGCTGCAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
15 7 0.29
16 2 0.08
17 2 0.08
18 2 0.08
19 11 0.46
ACGTcount: A:0.58, C:0.02, G:0.05, T:0.35
Consensus pattern (17 bp):
AAAATTATTTAAAGAAC
Found at i:145335 original size:24 final size:24
Alignment explanation
Indices: 145308--145393 Score: 77
Period size: 24 Copynumber: 3.5 Consensus size: 24
145298 TCGGTTTGCA
*
145308 AAAAAATCGGATTTTTT-TCCGGAT
1 AAAAAACCGG-TTTTTTATCCGGAT
*
145332 AAAAAACCGGTTTTTTATCCGGTTT
1 AAAAAACCGGTTTTTTATCCGG-AT
* *
145357 GAAAAAACCCGGTTTTTAATCTGG-T
1 -AAAAAA-CCGGTTTTTTATCCGGAT
145382 AAAAAAACCGGT
1 -AAAAAACCGGT
145394 CGTTCAATTT
Statistics
Matches: 53, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
23 6 0.11
24 19 0.36
25 8 0.15
26 6 0.11
27 14 0.26
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (24 bp):
AAAAAACCGGTTTTTTATCCGGAT
Found at i:145361 original size:26 final size:25
Alignment explanation
Indices: 145299--145373 Score: 73
Period size: 24 Copynumber: 2.9 Consensus size: 25
145289 TAACCGGTTT
*
145299 CGGTTTGCAAAAAAATCGGATTTTTTTC
1 CGGTTTG--AAAAAACCGG-TTTTTTTC
*
145327 CGG-AT-AAAAAACCGGTTTTTTATC
1 CGGTTTGAAAAAACCGGTTTTTT-TC
145351 CGGTTTGAAAAAACCCGGTTTTT
1 CGGTTTGAAAAAA-CCGGTTTTT
145374 AATCTGGTAA
Statistics
Matches: 40, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
23 6 0.15
24 14 0.35
25 1 0.03
26 6 0.15
27 10 0.25
28 3 0.08
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.36
Consensus pattern (25 bp):
CGGTTTGAAAAAACCGGTTTTTTTC
Found at i:145387 original size:26 final size:26
Alignment explanation
Indices: 145332--145393 Score: 65
Period size: 27 Copynumber: 2.4 Consensus size: 26
145322 TTTTCCGGAT
* *
145332 AAAAAACCGGTTTTTTATCCGGTTTGA
1 AAAAAACCGGTTTTTAATCCGG-TTAA
* *
145359 AAAAACCCGGTTTTTAATCTGG-T-A
1 AAAAAACCGGTTTTTAATCCGGTTAA
145383 AAAAAACCGGT
1 AAAAAACCGGT
145394 CGTTCAATTT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
24 11 0.35
25 1 0.03
27 19 0.61
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.31
Consensus pattern (26 bp):
AAAAAACCGGTTTTTAATCCGGTTAA
Found at i:145932 original size:22 final size:22
Alignment explanation
Indices: 145907--145959 Score: 88
Period size: 22 Copynumber: 2.4 Consensus size: 22
145897 TCTCGATCTA
* *
145907 TCTCTGATTTCATGCATGTACC
1 TCTCTAATCTCATGCATGTACC
145929 TCTCTAATCTCATGCATGTACC
1 TCTCTAATCTCATGCATGTACC
145951 TCTCTAATC
1 TCTCTAATC
145960 ATCTACGGTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.21, C:0.30, G:0.09, T:0.40
Consensus pattern (22 bp):
TCTCTAATCTCATGCATGTACC
Found at i:151848 original size:21 final size:23
Alignment explanation
Indices: 151822--151864 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 23
151812 TAACATCTAA
*
151822 ATTATATATAT-AAT-TTAAATT
1 ATTATAAATATAAATATTAAATT
151843 ATTATAAATATAAATATTAAAT
1 ATTATAAATATAAATATTAAAT
151865 ATGTGAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 10 0.53
22 3 0.16
23 6 0.32
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (23 bp):
ATTATAAATATAAATATTAAATT
Found at i:153739 original size:29 final size:29
Alignment explanation
Indices: 153697--153755 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
153687 GGTTCCATGA
*
153697 ACTATCATATACGATTCTTTATCTAAATT
1 ACTATCATATACGATCCTTTATCTAAATT
153726 ACTATCATATACGATCCTTTATCTAAATT
1 ACTATCATATACGATCCTTTATCTAAATT
153755 A
1 A
153756 AGAGGGATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.36, C:0.19, G:0.03, T:0.42
Consensus pattern (29 bp):
ACTATCATATACGATCCTTTATCTAAATT
Found at i:154351 original size:43 final size:42
Alignment explanation
Indices: 154289--154388 Score: 105
Period size: 43 Copynumber: 2.4 Consensus size: 42
154279 CTATACACCA
* * *
154289 GTAAGGCTTAATCTTTGCACAAAGCAGA-GGAGCCTAGGAAAACT
1 GTAAGG-TTTATCCTTGCACAAAGCAAATGGA-CCT-GGAAAACT
* * *
154333 GTAAGGTTTATCCTTGCACACAGTAAATGGACCTGGGAAACT
1 GTAAGGTTTATCCTTGCACAAAGCAAATGGACCTGGAAAACT
154375 GTAAGGTTTA-CCTT
1 GTAAGGTTTATCCTT
154389 CGCATACAGT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
41 4 0.08
42 17 0.35
43 19 0.39
44 9 0.18
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (42 bp):
GTAAGGTTTATCCTTGCACAAAGCAAATGGACCTGGAAAACT
Found at i:160813 original size:3 final size:3
Alignment explanation
Indices: 160805--160838 Score: 59
Period size: 3 Copynumber: 11.0 Consensus size: 3
160795 CAAACAAAGA
160805 AAG AAG AAGG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AA-G AAG AAG AAG AAG AAG AAG AAG AAG
160839 GAAGCTTCTT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 27 0.90
4 3 0.10
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:166087 original size:19 final size:20
Alignment explanation
Indices: 166050--166088 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
166040 TTTCAGAAAA
*
166050 TTTTCAAATATTATATTATC
1 TTTTCAAATAATATATTATC
*
166070 TTTT-AAATAATATTTTATC
1 TTTTCAAATAATATATTATC
166089 GAGATTGTTC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.36, C:0.08, G:0.00, T:0.56
Consensus pattern (20 bp):
TTTTCAAATAATATATTATC
Found at i:172050 original size:14 final size:14
Alignment explanation
Indices: 172031--172057 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
172021 TTTTCAACCA
172031 TTTAACAATGAGCC
1 TTTAACAATGAGCC
172045 TTTAACAATGAGC
1 TTTAACAATGAGC
172058 GTTCAAACAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.30
Consensus pattern (14 bp):
TTTAACAATGAGCC
Found at i:173092 original size:4 final size:4
Alignment explanation
Indices: 173083--173121 Score: 51
Period size: 4 Copynumber: 9.8 Consensus size: 4
173073 ACTTTGATGT
* * *
173083 TATG TATG TATG TATG TATG TATG CATG CATG CATG TAT
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT
173122 ATGTATAATA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 33 1.00
ACGTcount: A:0.26, C:0.08, G:0.23, T:0.44
Consensus pattern (4 bp):
TATG
Found at i:180428 original size:23 final size:26
Alignment explanation
Indices: 180383--180429 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
180373 TCTATTTAGT
*
180383 TTAATAAACTAATGTTATGCAAACTA
1 TTAACAAACTAATGTTATGCAAACTA
180409 TTAACAAA-TAAT-TTAT-CAAAC
1 TTAACAAACTAATGTTATGCAAAC
180430 ACTAAAATCC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 5 0.25
24 4 0.20
25 4 0.20
26 7 0.35
ACGTcount: A:0.49, C:0.13, G:0.04, T:0.34
Consensus pattern (26 bp):
TTAACAAACTAATGTTATGCAAACTA
Found at i:180787 original size:268 final size:271
Alignment explanation
Indices: 180318--180815 Score: 759
Period size: 268 Copynumber: 1.8 Consensus size: 271
180308 AACTTTCATA
* * * * * * *
180318 TGAATTTATTCGTGAACATAAATGAATCGTTCACACATTTATTTGTGTTGGTTCATCTATTTAGT
1 TGAACTTATCCGTGAACATAAACGAATC-TTCACACATTTATTTATCTTCGTTCATCTATTTAAT
*
180383 TTAATAAACTAATGTTATGCAAACTATTAACAAATAATTTATCAAACACTAAAATCCGGTCCATA
65 TTAATAAACTAATCTTATGCAAACTATTAACAAATAATTTATCAAACACTAAAATCCGGTCCATA
* * *
180448 ACACTGACCATATTGAAAAATGAAAACCATTGGCTGTGTATTCTCGAGCTACGGCGAC-A-CGAG
130 ACACTGACCATAATGAAAAATGAAAACCATTGGCCGTGTATTCTCGAGCTACGGCGACAAGAGAG
180511 AGAGAGAGAGACAAACCTCGGAGTAAATATGGTTAAAATATGAGAGTCGGGGAAACAGGTTTAAA
195 AGAGAGAGAGACAAACCTCGGAGTAAATATGGTTAAAATATGAGAGTCGGGGAAACAGGTTTAAA
180576 CGAATTTTGGTG
260 CGAATTTTGGTG
* * * *
180588 TGAACTTATCCGTGAACATAAACGAAT-TTTACACGTTTATTTATCTTCGTTTATTTATTTAATT
1 TGAACTTATCCGTGAACATAAACGAATCTTCACACATTTATTTATCTTCGTTCATCTATTTAATT
* * * *
180652 TAATAAACTAATCTTATGCAAACTATTCACAAATAGTTTATCAATCGCTAAAATCCGGTCCATAA
66 TAATAAACTAATCTTATGCAAACTATTAACAAATAATTTATCAAACACTAAAATCCGGTCCATAA
* *
180717 CACTGACCATAATGAAAAATGAAAATCATTGGCCGTGTATTCTGGAGCTACGGCGACAAGAGAGA
131 CACTGACCATAATGAAAAATGAAAACCATTGGCCGTGTATTCTCGAGCTACGGCGAC-A-AGAGA
180782 GAGAGAGAGAGACAAACCTCGGAGTAAATATGGT
194 GAGAGAGAGAGACAAACCTCGGAGTAAATATGGT
180816 CAGAATCAGG
Statistics
Matches: 203, Mismatches: 21, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
268 142 0.70
270 24 0.12
271 1 0.00
272 36 0.18
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.30
Consensus pattern (271 bp):
TGAACTTATCCGTGAACATAAACGAATCTTCACACATTTATTTATCTTCGTTCATCTATTTAATT
TAATAAACTAATCTTATGCAAACTATTAACAAATAATTTATCAAACACTAAAATCCGGTCCATAA
CACTGACCATAATGAAAAATGAAAACCATTGGCCGTGTATTCTCGAGCTACGGCGACAAGAGAGA
GAGAGAGAGACAAACCTCGGAGTAAATATGGTTAAAATATGAGAGTCGGGGAAACAGGTTTAAAC
GAATTTTGGTG
Found at i:186880 original size:36 final size:36
Alignment explanation
Indices: 186838--186913 Score: 143
Period size: 36 Copynumber: 2.1 Consensus size: 36
186828 TATAGCTAAA
*
186838 AAAAATCGTCTTTATTCGAATTTTGCCAAAAATAGC
1 AAAAATCGTATTTATTCGAATTTTGCCAAAAATAGC
186874 AAAAATCGTATTTATTCGAATTTTGCCAAAAATAGC
1 AAAAATCGTATTTATTCGAATTTTGCCAAAAATAGC
186910 AAAA
1 AAAA
186914 TCCCGAAAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (36 bp):
AAAAATCGTATTTATTCGAATTTTGCCAAAAATAGC
Found at i:187540 original size:2 final size:2
Alignment explanation
Indices: 187533--187561 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
187523 AAATAAGAAT
187533 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
187562 CATTTTTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:187613 original size:26 final size:26
Alignment explanation
Indices: 187582--187633 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
187572 CGATAAAATT
187582 GAGATCTAACCGAAAAAGAATATAAA
1 GAGATCTAACCGAAAAAGAATATAAA
* *
187608 GAGATCTAATCGAAAAATAATATAAA
1 GAGATCTAACCGAAAAAGAATATAAA
187634 TAGAGGAGCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.58, C:0.10, G:0.13, T:0.19
Consensus pattern (26 bp):
GAGATCTAACCGAAAAAGAATATAAA
Found at i:190578 original size:4 final size:4
Alignment explanation
Indices: 190569--190602 Score: 59
Period size: 4 Copynumber: 8.5 Consensus size: 4
190559 ATACATATGT
*
190569 ATAC ATAC ATAC ATAC ATAC GTAC ATAC ATAC AT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT
190603 CTGGTGTTTC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.47, C:0.24, G:0.03, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:196801 original size:2 final size:2
Alignment explanation
Indices: 196794--196831 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
196784 TTGATCTTAC
196794 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
196832 GTTGAATCAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:197139 original size:29 final size:29
Alignment explanation
Indices: 197097--197155 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
197087 ATTTTCACCT
197097 AACTAAATTGATGTAAGCAATGACATCAA
1 AACTAAATTGATGTAAGCAATGACATCAA
197126 AACTAAATTGATGTAAGCAATGACATCAA
1 AACTAAATTGATGTAAGCAATGACATCAA
197155 A
1 A
197156 TTAATTTAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.49, C:0.14, G:0.14, T:0.24
Consensus pattern (29 bp):
AACTAAATTGATGTAAGCAATGACATCAA
Found at i:200692 original size:2 final size:2
Alignment explanation
Indices: 200685--200712 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
200675 TTGATCTTAC
200685 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
200713 GTTGAATCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:201019 original size:29 final size:29
Alignment explanation
Indices: 200977--201035 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
200967 ATTTTCACCT
200977 AACTAAATTGATGTAAGCAATGACATCAA
1 AACTAAATTGATGTAAGCAATGACATCAA
201006 AACTAAATTGATGTAAGCAATGACATCAA
1 AACTAAATTGATGTAAGCAATGACATCAA
201035 A
1 A
201036 TTAATTTAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.49, C:0.14, G:0.14, T:0.24
Consensus pattern (29 bp):
AACTAAATTGATGTAAGCAATGACATCAA
Found at i:204577 original size:2 final size:2
Alignment explanation
Indices: 204565--204609 Score: 83
Period size: 2 Copynumber: 23.0 Consensus size: 2
204555 TTGATCTTAC
204565 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
204606 AT AT
1 AT AT
204610 TAAAATATTG
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.02
2 41 0.98
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:210311 original size:21 final size:21
Alignment explanation
Indices: 210287--210331 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
210277 CAGTACAAAT
210287 TCGCATTGCGATTTTCCAGAA
1 TCGCATTGCGATTTTCCAGAA
210308 TCGCATTGCGATTTTCCAGAA
1 TCGCATTGCGATTTTCCAGAA
210329 TCG
1 TCG
210332 TAACGCGAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.33
Consensus pattern (21 bp):
TCGCATTGCGATTTTCCAGAA
Found at i:210339 original size:21 final size:21
Alignment explanation
Indices: 210294--210339 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
210284 AATTCGCATT
**
210294 GCGATTTTCCAGAATCGCATT
1 GCGATTTTCCAGAATCGCAAC
*
210315 GCGATTTTCCAGAATCGTAAC
1 GCGATTTTCCAGAATCGCAAC
210336 GCGA
1 GCGA
210340 ATATGAAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (21 bp):
GCGATTTTCCAGAATCGCAAC
Found at i:210356 original size:20 final size:20
Alignment explanation
Indices: 210327--210600 Score: 131
Period size: 20 Copynumber: 13.6 Consensus size: 20
210317 GATTTTCCAG
* **
210327 AATCGTAACGCGAATATGAA
1 AATCGCAACGCGAATCCGAA
**
210347 AATCGCAACGCGAA-CATATA
1 AATCGCAACGCGAATCCGA-A
* * *
210367 AATCGCAACGCGATTCTGAC
1 AATCGCAACGCGAATCCGAA
* * *
210387 TATCGCAACGAGTATCCGTAA
1 AATCGCAACGCGAATCCG-AA
* * *
210408 AATCGTAACGCGTATCCGTA
1 AATCGCAACGCGAATCCGAA
* *
210428 ACTCGCAACGC-AATACGTAA
1 AATCGCAACGCGAATCCG-AA
* * *
210448 AATCGCAACGTGTATCCGTA
1 AATCGCAACGCGAATCCGAA
* * *
210468 AATCGCAACGAGAATACGTA
1 AATCGCAACGCGAATCCGAA
* * *
210488 AATCGCAACGCGTATCTGTA
1 AATCGCAACGCGAATCCGAA
* * * *
210508 AATCGCAATGAGAATACGTA
1 AATCGCAACGCGAATCCGAA
* * * *
210528 AATCGTAATGCGTATCCGTA
1 AATCGCAACGCGAATCCGAA
**
210548 AATCGCAACGAC-AATACATAA
1 AATCGCAACG-CGAAT-CCGAA
* ** *
210569 AATCGTAACGCTTATCCGTA
1 AATCGCAACGCGAATCCGAA
210589 AATCGCAACGCG
1 AATCGCAACGCG
210601 GTTTTTAAAG
Statistics
Matches: 189, Mismatches: 57, Indels: 16
0.72 0.22 0.06
Matches are distributed among these distances:
19 5 0.03
20 148 0.78
21 36 0.19
ACGTcount: A:0.37, C:0.24, G:0.18, T:0.21
Consensus pattern (20 bp):
AATCGCAACGCGAATCCGAA
Found at i:210463 original size:40 final size:41
Alignment explanation
Indices: 210388--210598 Score: 275
Period size: 40 Copynumber: 5.2 Consensus size: 41
210378 GATTCTGACT
** *
210388 ATCGCAACGAGTATCCGTAAAATCGTAACGCGTATCCGTAA
1 ATCGCAACGACAATACGTAAAATCGTAACGCGTATCCGTAA
* * *
210429 CTCGCAACG-CAATACGTAAAATCGCAACGTGTATCCGTAA
1 ATCGCAACGACAATACGTAAAATCGTAACGCGTATCCGTAA
* * *
210469 ATCGCAACGAGAATACGT-AAATCGCAACGCGTATCTGTAA
1 ATCGCAACGACAATACGTAAAATCGTAACGCGTATCCGTAA
* * *
210509 ATCGCAATGAGAATACGT-AAATCGTAATGCGTATCCGTAA
1 ATCGCAACGACAATACGTAAAATCGTAACGCGTATCCGTAA
* *
210549 ATCGCAACGACAATACATAAAATCGTAACGCTTATCCGTAA
1 ATCGCAACGACAATACGTAAAATCGTAACGCGTATCCGTAA
210590 ATCGCAACG
1 ATCGCAACG
210599 CGGTTTTTAA
Statistics
Matches: 149, Mismatches: 19, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
40 105 0.70
41 44 0.30
ACGTcount: A:0.37, C:0.24, G:0.18, T:0.21
Consensus pattern (41 bp):
ATCGCAACGACAATACGTAAAATCGTAACGCGTATCCGTAA
Found at i:210476 original size:121 final size:121
Alignment explanation
Indices: 210346--210600 Score: 338
Period size: 121 Copynumber: 2.1 Consensus size: 121
210336 GCGAATATGA
* * * *
210346 AAATCGCAACGCGAACATATAAATCGCAACGCG-ATTCTG-ACTATCGCAACGAGTATCCGTAAA
1 AAATCGCAACGCGAACACATAAATCGCAACGCGTA-TCTGTA-AATCGCAACGAGAATACGT-AA
* *
210409 ATCGTAACGCGTATCCGTAACTCGCAACG-CAATACGTAAAATCGCAACG-TGTATCCGT
63 ATCGTAACGCGTATCCGTAAATCGCAACGACAATACATAAAATCGCAACGCT-TATCCGT
* * * *
210467 AAATCGCAACGAGAATACGTAAATCGCAACGCGTATCTGTAAATCGCAATGAGAATACGTAAATC
1 AAATCGCAACGCGAACACATAAATCGCAACGCGTATCTGTAAATCGCAACGAGAATACGTAAATC
* *
210532 GTAATGCGTATCCGTAAATCGCAACGACAATACATAAAATCGTAACGCTTATCCGT
66 GTAACGCGTATCCGTAAATCGCAACGACAATACATAAAATCGCAACGCTTATCCGT
210588 AAATCGCAACGCG
1 AAATCGCAACGCG
210601 GTTTTTAAAG
Statistics
Matches: 117, Mismatches: 13, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
120 29 0.25
121 85 0.73
122 3 0.03
ACGTcount: A:0.37, C:0.24, G:0.18, T:0.21
Consensus pattern (121 bp):
AAATCGCAACGCGAACACATAAATCGCAACGCGTATCTGTAAATCGCAACGAGAATACGTAAATC
GTAACGCGTATCCGTAAATCGCAACGACAATACATAAAATCGCAACGCTTATCCGT
Found at i:210511 original size:60 final size:59
Alignment explanation
Indices: 210346--210600 Score: 201
Period size: 61 Copynumber: 4.2 Consensus size: 59
210336 GCGAATATGA
* ** *
210346 AAATCGCAACGCGAACATATAAATCGCAACGCGATTCTG-ACTATCGCAACGAGTATCCGT
1 AAATCGCAACGCGAATACGTAAATCGCAACGCGA-TCTGTA-AATCGCAACGAGTATCCGT
* * * * * *
210406 AAAATCGTAACGCGTATCCGTAACTCGCAACGCAATAC-GTAAAATCGCAACGTGTATCCGT
1 -AAATCGCAACGCGAATACGTAAATCGCAACGCGAT-CTGT-AAATCGCAACGAGTATCCGT
* * * *
210467 AAATCGCAACGAGAATACGTAAATCGCAACGCGTATCTGTAAATCGCAATGAGAATACGT
1 AAATCGCAACGCGAATACGTAAATCGCAACGCG-ATCTGTAAATCGCAACGAGTATCCGT
* * * * * * * **
210527 AAATCGTAATGCGTATCCGTAAATCGCAACGACAATACAT-AAAATCGTAACGCTTATCCGT
1 AAATCGCAACGCGAATACGTAAATCGCAACG-CGAT-C-TGTAAATCGCAACGAGTATCCGT
210588 AAATCGCAACGCG
1 AAATCGCAACGCG
210601 GTTTTTAAAG
Statistics
Matches: 151, Mismatches: 35, Indels: 16
0.75 0.17 0.08
Matches are distributed among these distances:
60 74 0.49
61 75 0.50
62 2 0.01
ACGTcount: A:0.37, C:0.24, G:0.18, T:0.21
Consensus pattern (59 bp):
AAATCGCAACGCGAATACGTAAATCGCAACGCGATCTGTAAATCGCAACGAGTATCCGT
Found at i:211198 original size:21 final size:21
Alignment explanation
Indices: 211137--211215 Score: 94
Period size: 20 Copynumber: 3.9 Consensus size: 21
211127 TTCTAAACTT
211137 AAAATCGCAAC-ATGA-AAATG
1 AAAATCGCAACGA-GAGAAATG
211157 AAAATCGCAAC-ACGA-AAATG
1 AAAATCGCAACGA-GAGAAATG
**
211177 ACTATCGCAACGAGAGAAATG
1 AAAATCGCAACGAGAGAAATG
211198 AAAATCGCAACGAGAGAA
1 AAAATCGCAACGAGAGAA
211216 TCGCAACGCG
Statistics
Matches: 52, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
20 30 0.58
21 22 0.42
ACGTcount: A:0.52, C:0.18, G:0.19, T:0.11
Consensus pattern (21 bp):
AAAATCGCAACGAGAGAAATG
Found at i:211219 original size:14 final size:14
Alignment explanation
Indices: 211197--211261 Score: 58
Period size: 14 Copynumber: 4.3 Consensus size: 14
211187 CGAGAGAAAT
211197 GAAAATCGCAACGA
1 GAAAATCGCAACGA
*
211211 GAGAATCGCAACGCGAAA
1 GAAAATCGCAA--CG--A
211229 TGAAAATCGCAACGA
1 -GAAAATCGCAACGA
* *
211244 GATAATCGCAACGC
1 GAAAATCGCAACGA
211258 GAAA
1 GAAA
211262 CCAAAATCGC
Statistics
Matches: 41, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
14 25 0.61
15 1 0.02
16 2 0.05
17 2 0.05
18 1 0.02
19 10 0.24
ACGTcount: A:0.46, C:0.22, G:0.23, T:0.09
Consensus pattern (14 bp):
GAAAATCGCAACGA
Found at i:211233 original size:33 final size:33
Alignment explanation
Indices: 211192--211272 Score: 135
Period size: 33 Copynumber: 2.5 Consensus size: 33
211182 CGCAACGAGA
211192 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
*
211225 GAAATGAAAATCGCAACGAGATAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
**
211258 GAAACCAAAATCGCA
1 GAAATGAAAATCGCA
211273 TTGCGATTTT
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 45 1.00
ACGTcount: A:0.47, C:0.22, G:0.21, T:0.10
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:211327 original size:33 final size:33
Alignment explanation
Indices: 211273--211347 Score: 114
Period size: 33 Copynumber: 2.2 Consensus size: 33
211263 CAAAATCGCA
* *
211273 TTGCGATTTTTCATTTCGCGTTGGGATTCTCTCG
1 TTGCGA-TTTTAATTTCGCGTTGCGATTCTCTCG
*
211307 TTGCGATTTTAATTTCGCGTTGCGATTCTCTTG
1 TTGCGATTTTAATTTCGCGTTGCGATTCTCTCG
211340 TTGCGATT
1 TTGCGATT
211348 CTCTCGTTGC
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
33 32 0.84
34 6 0.16
ACGTcount: A:0.11, C:0.19, G:0.23, T:0.48
Consensus pattern (33 bp):
TTGCGATTTTAATTTCGCGTTGCGATTCTCTCG
Found at i:211344 original size:14 final size:14
Alignment explanation
Indices: 211324--211361 Score: 67
Period size: 14 Copynumber: 2.7 Consensus size: 14
211314 TTTAATTTCG
211324 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
211338 TGTTGCGATTCTCT
1 CGTTGCGATTCTCT
211352 CGTTGCGATT
1 CGTTGCGATT
211362 TTCATTTCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.08, C:0.24, G:0.24, T:0.45
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:211490 original size:25 final size:26
Alignment explanation
Indices: 211436--211490 Score: 71
Period size: 25 Copynumber: 2.2 Consensus size: 26
211426 TTATGTTTAT
*
211436 TGTTTTTGGTATATCTTCACATTGTA
1 TGTTTTTGGTATATCTTAACATTGTA
211462 -GTTTTTGGTATATC-TAAC-TTGGTA
1 TGTTTTTGGTATATCTTAACATT-GTA
211486 TGTTT
1 TGTTT
211491 ATTGTTTTTG
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
23 2 0.08
24 6 0.23
25 18 0.69
ACGTcount: A:0.18, C:0.09, G:0.18, T:0.55
Consensus pattern (26 bp):
TGTTTTTGGTATATCTTAACATTGTA
Found at i:213220 original size:94 final size:94
Alignment explanation
Indices: 213059--213626 Score: 1023
Period size: 94 Copynumber: 6.1 Consensus size: 94
213049 TAGATTGCTT
* * *
213059 AGTAAATTTATTCGGTTGCTGCCAATACTGCTAAACTGTTTATTCTTTAACACTGTGAAGTTAGT
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
213124 ATTTGTCTTTTGTTTTGTCTTTTGGTTG-A
66 ATTTGTC-TTTGTTTTGTCTTTTGGTTGAA
*
213153 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
*
213218 ATTTGTCTTTGTTTTGTCTTTTAGTTGAA
66 ATTTGTCTTTGTTTTGTCTTTTGGTTGAA
*
213247 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACCGTGAAGTTAGT
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
213312 ATTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 ATTTGTCTTTGTTTTGTCTTTTGGTTGAA
*
213341 CGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
213406 ATTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 ATTTGTCTTTGTTTTGTCTTTTGGTTGAA
213435 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
213500 ATTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 ATTTGTCTTTGTTTTGTCTTTTGGTTGAA
* * *
213529 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAATACTCTAAAGTTAGT
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
213594 ATTTGTCTTTGTTTTGTCTTTTGGTTG-A
66 ATTTGTCTTTGTTTTGTCTTTTGGTTGAA
213622 AGTAA
1 AGTAA
213627 TGCAATCCAT
Statistics
Matches: 461, Mismatches: 12, Indels: 3
0.97 0.03 0.01
Matches are distributed among these distances:
93 25 0.05
94 436 0.95
ACGTcount: A:0.21, C:0.13, G:0.19, T:0.47
Consensus pattern (94 bp):
AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
ATTTGTCTTTGTTTTGTCTTTTGGTTGAA
Found at i:213747 original size:19 final size:19
Alignment explanation
Indices: 213723--213770 Score: 96
Period size: 19 Copynumber: 2.5 Consensus size: 19
213713 GCAACGAGAG
213723 AATCGCAACGCGAAATGAA
1 AATCGCAACGCGAAATGAA
213742 AATCGCAACGCGAAATGAA
1 AATCGCAACGCGAAATGAA
213761 AATCGCAACG
1 AATCGCAACG
213771 ACAAAATCGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.46, C:0.23, G:0.21, T:0.10
Consensus pattern (19 bp):
AATCGCAACGCGAAATGAA
Found at i:213856 original size:19 final size:21
Alignment explanation
Indices: 213832--213883 Score: 63
Period size: 19 Copynumber: 2.6 Consensus size: 21
213822 GCGATTCTCT
*
213832 CGTTGCGATTTTCA-TTTT-G
1 CGTTGCGATTTTCATTTTTCA
**
213851 CGTTGCGATAGTCATTTTTCA
1 CGTTGCGATTTTCATTTTTCA
213872 CGTTGCGATTTT
1 CGTTGCGATTTT
213884 AAGTTCCAGA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
19 12 0.46
20 4 0.15
21 10 0.38
ACGTcount: A:0.13, C:0.17, G:0.21, T:0.48
Consensus pattern (21 bp):
CGTTGCGATTTTCATTTTTCA
Found at i:214360 original size:21 final size:21
Alignment explanation
Indices: 214336--214402 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
214326 TCATTCCTCG
214336 AGAGTCCCCTCCCACCGTTCA
1 AGAGTCCCCTCCCACCGTTCA
* * ** * *
214357 AGAGGCCACTGTCATCGTTGA
1 AGAGTCCCCTCCCACCGTTCA
*
214378 AGAGGT-CCCTCCCACCATTCA
1 AGA-GTCCCCTCCCACCGTTCA
214399 AGAG
1 AGAG
214403 CCCAATTCAC
Statistics
Matches: 32, Mismatches: 13, Indels: 3
0.67 0.27 0.06
Matches are distributed among these distances:
20 1 0.03
21 30 0.94
22 1 0.03
ACGTcount: A:0.24, C:0.36, G:0.21, T:0.19
Consensus pattern (21 bp):
AGAGTCCCCTCCCACCGTTCA
Found at i:214360 original size:42 final size:42
Alignment explanation
Indices: 214284--214402 Score: 107
Period size: 42 Copynumber: 2.8 Consensus size: 42
214274 GACTCGCCTG
* * * * * * *
214284 TCATCCCTCAAGAGTCCACTCCTATCGTTGAAGAGGCCCCTA
1 TCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCCACTA
*
214326 TCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCCACTG
1 TCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCCACTA
* * *
214368 TCA-TCGTTGAAGAGGT-CCCTCCCACCATTCAAGAG
1 TCATTCCTCG-AGA-GTCCCCTCCCACCGTTCAAGAG
214403 CCCAATTCAC
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
41 4 0.06
42 58 0.91
43 2 0.03
ACGTcount: A:0.23, C:0.36, G:0.18, T:0.23
Consensus pattern (42 bp):
TCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCCACTA
Found at i:215895 original size:19 final size:17
Alignment explanation
Indices: 215879--215977 Score: 59
Period size: 19 Copynumber: 5.8 Consensus size: 17
215869 AAAAATGACT
215879 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATG--A
*
215898 ATCGCAA--CGAGA-GA
1 ATCGCAATGCGAAATGA
215912 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATG--A
215931 ATCGCAA--CGACAA--A
1 ATCGCAATGCGA-AATGA
*
215945 ATCGCAATGCGAAACTAAA
1 ATCGCAATGCGAAA-T-GA
*
215964 ATCGCAAAGCGAAA
1 ATCGCAATGCGAAA
215978 CTAAATTCGC
Statistics
Matches: 65, Mismatches: 3, Indels: 24
0.71 0.03 0.26
Matches are distributed among these distances:
14 16 0.25
15 2 0.03
16 8 0.12
17 8 0.12
18 2 0.03
19 29 0.45
ACGTcount: A:0.47, C:0.20, G:0.20, T:0.12
Consensus pattern (17 bp):
ATCGCAATGCGAAATGA
Found at i:215921 original size:33 final size:33
Alignment explanation
Indices: 215879--215970 Score: 150
Period size: 33 Copynumber: 2.8 Consensus size: 33
215869 AAAAATGACT
* *
215879 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
215912 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
215945 ATCGCAATGCGAAACT-AAAATCGCAA
1 ATCGCAATGCGAAA-TGAAAATCGCAA
215971 AGCGAAACTA
Statistics
Matches: 56, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
33 55 0.98
34 1 0.02
ACGTcount: A:0.47, C:0.21, G:0.20, T:0.13
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGACAAA
Found at i:215994 original size:19 final size:19
Alignment explanation
Indices: 215911--215987 Score: 85
Period size: 19 Copynumber: 4.3 Consensus size: 19
215901 GCAACGAGAG
215911 AATCGCAATGCGAAA-TGAA
1 AATCGCAATGCGAAACT-AA
215930 AATCGCAA--CG--AC-AA
1 AATCGCAATGCGAAACTAA
215944 AATCGCAATGCGAAACTAA
1 AATCGCAATGCGAAACTAA
*
215963 AATCGCAAAGCGAAACTAA
1 AATCGCAATGCGAAACTAA
*
215982 ATTCGC
1 AATCGC
215988 GTTGCGATTT
Statistics
Matches: 50, Mismatches: 2, Indels: 12
0.78 0.03 0.19
Matches are distributed among these distances:
14 10 0.20
15 1 0.02
16 2 0.04
17 2 0.04
18 2 0.04
19 33 0.66
ACGTcount: A:0.47, C:0.22, G:0.17, T:0.14
Consensus pattern (19 bp):
AATCGCAATGCGAAACTAA
Found at i:216005 original size:19 final size:19
Alignment explanation
Indices: 215983--216048 Score: 70
Period size: 19 Copynumber: 3.7 Consensus size: 19
215973 CGAAACTAAA
215983 TTCGCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
*
216002 TTCGCTTTGCGA--TTC--
1 TTCGCGTTGCGATTTTCAT
*
216017 -TCTCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
*
216035 TTCGCATTGCGATT
1 TTCGCGTTGCGATT
216049 CTCTCGTTGC
Statistics
Matches: 37, Mismatches: 5, Indels: 10
0.71 0.10 0.19
Matches are distributed among these distances:
14 9 0.24
16 3 0.08
17 3 0.08
19 22 0.59
ACGTcount: A:0.11, C:0.23, G:0.20, T:0.47
Consensus pattern (19 bp):
TTCGCGTTGCGATTTTCAT
Found at i:216027 original size:14 final size:14
Alignment explanation
Indices: 216008--216061 Score: 54
Period size: 14 Copynumber: 3.5 Consensus size: 14
215998 TCATTTCGCT
216008 TTGCGATTCTCTCG
1 TTGCGATTCTCTCG
*
216022 TTGCGATTTTCATTTCG
1 TTGCGA--TTC-TCTCG
216039 CATTGCGATTCTCTCG
1 --TTGCGATTCTCTCG
216055 TTGCGAT
1 TTGCGAT
216062 AGTAATTTCT
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
14 13 0.39
16 7 0.21
17 7 0.21
19 6 0.18
ACGTcount: A:0.11, C:0.24, G:0.20, T:0.44
Consensus pattern (14 bp):
TTGCGATTCTCTCG
Found at i:216029 original size:33 final size:33
Alignment explanation
Indices: 215987--216061 Score: 141
Period size: 33 Copynumber: 2.3 Consensus size: 33
215977 ACTAAATTCG
*
215987 CGTTGCGATTTTCATTTCGCTTTGCGATTCTCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
216020 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
216053 CGTTGCGAT
1 CGTTGCGAT
216062 AGTAATTTCT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 41 1.00
ACGTcount: A:0.11, C:0.24, G:0.20, T:0.45
Consensus pattern (33 bp):
CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
Found at i:216070 original size:33 final size:33
Alignment explanation
Indices: 216000--216081 Score: 110
Period size: 33 Copynumber: 2.5 Consensus size: 33
215990 TGCGATTTTC
* ** *
216000 ATTTCGCTTTGCGATTCTCTCGTTGCGATTTTC
1 ATTTCGCATTGCGATTCTCTCGTTGCGATAGTA
216033 ATTTCGCATTGCGATTCTCTCGTTGCGATAGTA
1 ATTTCGCATTGCGATTCTCTCGTTGCGATAGTA
*
216066 ATTTCTGCGTTGCGAT
1 ATTTC-GCATTGCGAT
216082 AGACATTAAG
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
33 34 0.79
34 9 0.21
ACGTcount: A:0.13, C:0.22, G:0.21, T:0.44
Consensus pattern (33 bp):
ATTTCGCATTGCGATTCTCTCGTTGCGATAGTA
Found at i:216127 original size:20 final size:20
Alignment explanation
Indices: 216054--216127 Score: 62
Period size: 20 Copynumber: 3.6 Consensus size: 20
216044 CGATTCTCTC
* *
216054 GTTGCGATAGTAATTTCTGC
1 GTTGCGATAGTCATTTCTGT
* **
216074 GTTGCGATAGACA-TTAAGAT
1 GTTGCGATAGTCATTTCTG-T
216094 GATTGCGA-ACGTCATTTCTGT
1 G-TTGCGATA-GTCATTTCTGT
216115 GTTGCGATAGTCA
1 GTTGCGATAGTCA
216128 AATGAATGCT
Statistics
Matches: 41, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
19 3 0.07
20 23 0.56
21 12 0.29
22 3 0.07
ACGTcount: A:0.24, C:0.15, G:0.26, T:0.35
Consensus pattern (20 bp):
GTTGCGATAGTCATTTCTGT
Found at i:218626 original size:24 final size:24
Alignment explanation
Indices: 218592--218645 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
218582 CTGAAAAATC
218592 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
* *
218616 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
218640 ATCAAA
1 ATCAAA
218646 TTTCGAATAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.20
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGACCAAG
Found at i:218659 original size:24 final size:24
Alignment explanation
Indices: 218592--218659 Score: 64
Period size: 24 Copynumber: 2.8 Consensus size: 24
218582 CTGAAAAATC
* * *
218592 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAGTCCGAATACTGACCAAG
** *
218616 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAGTCCGAATACTGACCAAG
* *
218640 ATCAAATTTCGAATACTGAC
1 ATCAAAGTCCGAATACTGAC
218660 TAGTACTCAC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.18, T:0.24
Consensus pattern (24 bp):
ATCAAAGTCCGAATACTGACCAAG
Found at i:220002 original size:20 final size:20
Alignment explanation
Indices: 219977--220049 Score: 83
Period size: 20 Copynumber: 3.6 Consensus size: 20
219967 CAAAATCGCA
*
219977 TTGCGATTTATGTATTCTCG
1 TTGCGATTTACGTATTCTCG
* * *
219997 TTGCGATTTACGGATACGCG
1 TTGCGATTTACGTATTCTCG
*
220017 TTGCGATTTTACGTATTGTCG
1 TTGCGA-TTTACGTATTCTCG
*
220038 TTGTGATTTACG
1 TTGCGATTTACG
220050 GATACGCATT
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
20 28 0.65
21 15 0.35
ACGTcount: A:0.16, C:0.15, G:0.25, T:0.44
Consensus pattern (20 bp):
TTGCGATTTACGTATTCTCG
Found at i:220029 original size:21 final size:21
Alignment explanation
Indices: 219995--220085 Score: 98
Period size: 21 Copynumber: 4.4 Consensus size: 21
219985 TATGTATTCT
219995 CGTTGCGA-TTTACGGATACG
1 CGTTGCGATTTTACGGATACG
* *
220015 CGTTGCGATTTTACGTAT-TG
1 CGTTGCGATTTTACGGATACG
*
220035 TCGTTGTGA-TTTACGGATACG
1 -CGTTGCGATTTTACGGATACG
* * *
220056 CATTGTGATTTTACGGATACT
1 CGTTGCGATTTTACGGATACG
220077 CGTTGCGAT
1 CGTTGCGAT
220086 AGTCAGAATC
Statistics
Matches: 58, Mismatches: 9, Indels: 7
0.78 0.12 0.09
Matches are distributed among these distances:
20 24 0.41
21 34 0.59
ACGTcount: A:0.19, C:0.16, G:0.26, T:0.38
Consensus pattern (21 bp):
CGTTGCGATTTTACGGATACG
Found at i:220039 original size:41 final size:41
Alignment explanation
Indices: 219973--220085 Score: 156
Period size: 41 Copynumber: 2.8 Consensus size: 41
219963 AAACCAAAAT
*
219973 CGCATTGCGA-TTTATGTATTCTCGTTGCGATTTACGGATA
1 CGCATTGCGATTTTACGTATTCTCGTTGCGATTTACGGATA
* * *
220013 CGCGTTGCGATTTTACGTATTGTCGTTGTGATTTACGGATA
1 CGCATTGCGATTTTACGTATTCTCGTTGCGATTTACGGATA
* * *
220054 CGCATTGTGATTTTACGGATACTCGTTGCGAT
1 CGCATTGCGATTTTACGTATTCTCGTTGCGAT
220086 AGTCAGAATC
Statistics
Matches: 62, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
40 9 0.15
41 53 0.85
ACGTcount: A:0.19, C:0.17, G:0.25, T:0.40
Consensus pattern (41 bp):
CGCATTGCGATTTTACGTATTCTCGTTGCGATTTACGGATA
Found at i:220117 original size:20 final size:20
Alignment explanation
Indices: 220094--220144 Score: 77
Period size: 20 Copynumber: 2.5 Consensus size: 20
220084 ATAGTCAGAA
*
220094 TCGCGTTGCGATTTAT-ATGT
1 TCGCGTTGCGATTT-TCATAT
220114 TCGCGTTGCGATTTTCATAT
1 TCGCGTTGCGATTTTCATAT
220134 TCGCGTTGCGA
1 TCGCGTTGCGA
220145 GCGTTGCGAT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 1 0.03
20 28 0.97
ACGTcount: A:0.14, C:0.20, G:0.25, T:0.41
Consensus pattern (20 bp):
TCGCGTTGCGATTTTCATAT
Found at i:220158 original size:29 final size:29
Alignment explanation
Indices: 220116--220173 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
220106 TTATATGTTC
220116 GCGTTGCGATTTTCATATTCGCGTTGCGA
1 GCGTTGCGATTTTCATATTCGCGTTGCGA
220145 GCGTTGCGATTTTCATATTCGCGTTGCGA
1 GCGTTGCGATTTTCATATTCGCGTTGCGA
220174 TTCTGGAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.14, C:0.21, G:0.28, T:0.38
Consensus pattern (29 bp):
GCGTTGCGATTTTCATATTCGCGTTGCGA
Found at i:220228 original size:21 final size:21
Alignment explanation
Indices: 220148--220240 Score: 75
Period size: 21 Copynumber: 4.5 Consensus size: 21
220138 GTTGCGAGCG
* *
220148 TTGCGATT-TTCATATTCGCG
1 TTGCGATTCTTCATAATCGCA
** *
220168 TTGCGATTCTGGAAAATCGCA
1 TTGCGATTCTTCATAATCGCA
* *
220189 ATGCGAATT-TGT-ATTATCGCA
1 TTGCG-ATTCT-TCATAATCGCA
*
220210 TTGCGATTCTTCATAATCGCG
1 TTGCGATTCTTCATAATCGCA
220231 TTGCGATTCT
1 TTGCGATTCT
220241 GGGAACTGAT
Statistics
Matches: 56, Mismatches: 12, Indels: 9
0.73 0.16 0.12
Matches are distributed among these distances:
20 12 0.21
21 41 0.73
22 3 0.05
ACGTcount: A:0.22, C:0.19, G:0.20, T:0.39
Consensus pattern (21 bp):
TTGCGATTCTTCATAATCGCA
Found at i:220274 original size:20 final size:19
Alignment explanation
Indices: 220225--220277 Score: 61
Period size: 20 Copynumber: 2.7 Consensus size: 19
220215 ATTCTTCATA
220225 ATCGCGTTGCGATTCTGGG
1 ATCGCGTTGCGATTCTGGG
* **
220244 AACTGATTTGCGATTCTGGAG
1 ATC-GCGTTGCGATTCTGG-G
220265 ATCGCGTTGCGAT
1 ATCGCGTTGCGAT
220278 ATTTATTTCG
Statistics
Matches: 26, Mismatches: 6, Indels: 3
0.74 0.17 0.09
Matches are distributed among these distances:
19 2 0.08
20 21 0.81
21 3 0.12
ACGTcount: A:0.17, C:0.19, G:0.32, T:0.32
Consensus pattern (19 bp):
ATCGCGTTGCGATTCTGGG
Done.