genome.fa.s9275.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009275.1 Hibiscus syriacus cultivar Beakdansim tig00112958_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64125

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65--169	32	3.0	34	86	10	151	41	9	17	31	1.81
376--416	21	2.0	21	95	0	73	21	12	29	36	1.90
381--424	21	2.1	21	86	0	61	22	15	22	38	1.92
4238--4279	22	1.9	22	85	9	59	38	28	19	14	1.90
6246--6289	21	2.0	21	83	12	54	47	13	34	4	1.63
6969--7037	24	2.9	24	82	0	75	14	14	14	56	1.68
6986--7074	24	3.7	24	84	0	97	13	13	12	60	1.59
7610--7683	14	5.7	13	79	12	55	9	8	18	63	1.49
7613--7669	23	2.4	24	85	2	71	8	8	21	61	1.52
7585--7683	37	2.7	36	84	7	110	11	9	17	62	1.53
7624--7677	24	2.3	23	83	3	63	11	7	16	64	1.47
16184--16291	57	1.9	57	90	3	173	47	5	9	37	1.59
16509--16650	29	4.6	29	69	13	77	21	7	28	42	1.80
16635--16701	28	2.4	28	90	2	109	11	7	34	46	1.69
17333--17521	104	1.8	105	87	1	281	47	10	11	31	1.72
20861--20945	32	2.6	33	79	3	93	22	14	23	40	1.90
21709--21788	32	2.5	33	79	2	90	11	13	30	45	1.79
21785--21831	22	2.1	22	88	0	67	12	12	23	51	1.74
28009--28122	44	2.6	43	83	5	149	39	3	6	50	1.44
29397--29442	20	2.3	19	89	10	74	54	10	17	17	1.70
29564--29610	20	2.4	19	82	10	67	53	10	17	19	1.72
29573--29615	20	2.3	19	88	11	63	51	11	16	20	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31912--31977	33	2.0	33	87	0	96	28	1	45	24	1.62
33765--33813	19	2.6	19	93	0	80	30	2	10	57	1.43
33884--35638	199	8.9	199	97	1	3260	36	15	16	31	1.90
33884--35638	397	4.4	397	97	0	3281	36	15	16	31	1.90
37097--37164	21	3.4	18	69	21	55	36	8	35	19	1.83
37097--37194	6	16.3	6	80	0	70	36	7	34	21	1.81
37112--37198	3	29.0	3	77	0	84	35	5	34	24	1.79
37100--37190	42	2.2	42	91	0	146	35	7	35	21	1.83
37097--37194	18	5.4	18	78	0	88	36	7	34	21	1.81
38657--38999	184	1.9	183	92	0	578	35	14	16	33	1.89
41561--41618	23	2.6	23	86	2	82	36	6	20	36	1.80
41577--41627	23	2.2	23	89	6	77	35	1	19	43	1.63
41630--41668	20	2.0	20	89	0	60	25	15	10	48	1.76
41989--42057	21	3.3	22	86	8	90	33	4	21	40	1.73
42314--42364	25	2.0	25	92	0	84	33	7	19	39	1.81
42610--42646	18	2.1	18	89	0	56	32	5	10	51	1.60
42602--42648	24	2.0	24	86	0	67	34	4	14	46	1.64
42900--42986	40	2.2	40	91	4	142	47	21	13	17	1.82
43381--43438	22	2.6	23	88	5	91	36	6	20	36	1.80
43400--43452	22	2.5	20	77	19	54	35	1	20	41	1.64
50647--50705	23	2.6	23	86	0	82	22	27	25	25	2.00
50669--50713	23	2.0	23	86	0	63	20	24	24	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55851--55909	23	2.6	23	77	0	73	16	28	25	28	1.97
58782--58833	21	2.5	20	81	3	59	34	15	21	28	1.94

Tables:   1

The End!