Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009276.1 Hibiscus syriacus cultivar Beakdansim tig00112959_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 285815
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
File 1 of 2
Found at i:348 original size:194 final size:197
Alignment explanation
Indices: 1--830 Score: 1362
Period size: 194 Copynumber: 4.3 Consensus size: 197
*
1 GTTTTATGAGAGAAT-TGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTT
1 GTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTC
65 CC-GAATGAATGGAAAACAGGGTGCACCCAT--AGTGTCGATCCATATATAAAAAGTGTCGATCC
66 CCAGAATGAATGGAAAACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAG-GTCGATCC
127 C-AAATCAATCGAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTAT
130 CAAAATC-ATCGAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTAT
*
191 ACCC
194 ACCG
* *
195 GTTTTATGAGAGGATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGTATTTTTTTT
1 GTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCG-ATATTTTTT
* *
260 TCCAGAATGAATGGGAAA-A-GGTGCA-CCATAAAGTGTCGATCCATATATAAAAA-GTCGATCC
65 CCCAGAATGAATGGAAAACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGGTCGATCC
321 CAAAATCATCGAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACC-GTACAATTATA
130 CAAAATCATCGAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATA
385 CCG
195 CCG
*
388 GTTTTATGAGAGGATA-GTCTAAATAATGTGTCGACACTAATATAGTTT-TGTCGATATTTTTTC
1 GTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTC
451 CCAGAATG-ATGGAAAACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCC
66 CCAGAATGAATGGAAAACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAG-GTCGATCC
* *
515 CAAAATCATCGAACCC-AAAGTATAATGTAATATGTAATTTTTCAATCTAATCGGTATAATTATA
130 CAAAATCATCGAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATA
579 CCG
195 CCG
582 GTTTTATGAGAGAATATGTCTAAATAATGTGTCGACAC-----TAGTTTGTGTCGATATTTTTTC
1 GTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTC
*
642 CCAGAATGAATGGAAAACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCC
66 CCAGAATGAATGGAAAACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAG-GTCGATCC
707 CAAAAATCATCGAACCCAAAAGTATAATGTAATATGT-ATTTTTCAATCTAA-CGGTACAATTAT
130 C-AAAATCATCGAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTAT
770 A-CG
194 ACCG
773 GTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATA
1 GTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATA
831 CTAATTTAAA
Statistics
Matches: 602, Mismatches: 12, Indels: 42
0.92 0.02 0.06
Matches are distributed among these distances:
189 7 0.01
190 23 0.04
191 74 0.12
192 128 0.21
193 93 0.15
194 144 0.24
195 71 0.12
196 49 0.08
197 13 0.02
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.32
Consensus pattern (197 bp):
GTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTC
CCAGAATGAATGGAAAACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGGTCGATCCC
AAAATCATCGAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATAC
CG
Found at i:715 original size:387 final size:381
Alignment explanation
Indices: 1--830 Score: 1366
Period size: 387 Copynumber: 2.1 Consensus size: 381
* *
1 GTTTTATGAGAGAATTGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTC
1 GTTTTATGAGAGAATAGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTCC
66 CGAATGAATGGAAAACAGGGTGCACCCATAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAA
66 CGAATGAATGGAAAACAGGGTGCACCCATAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAA
131 TCAATCGAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCCG
131 TCAATCGAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCCG
* * *
196 TTTTATGAGAGGATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGTATTTTTTTTT
196 TTTTATGAGAGAATATGTCTAAATAATGTGTCGACAC----ATAGTTTGTGTCGTATATTTTTTC
*
261 CCAGAATGAATGGGAAAAGGTGCACCATAAAGTGTCGATCCATATATAAAAAGTCGATCCCAAAA
257 CCAGAATGAATGGAAAAAGGTGCACCATAAAGTGTCGATCCATATATAAAAAGTCGATCCCAAAA
326 TCATCGAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGTACAATTATACCG
322 TCATCGAACCCAAAAGTATAATGTAATATGT-ATTTTTCAATCTAACCGTACAATTATA-CG
*
388 GTTTTATGAGAGGATAGTCTAAATAATGTGTCGACACTAATATAGTTT-TGTCGATATTTTTTCC
1 GTTTTATGAGAGAATAGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTCC
452 CAGAATG-ATGGAAAACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCC
66 C-GAATGAATGGAAAACAGGGTGCACCCAT--AGTGTCGATCCATATATAAAAAGTGTCGATCCC
* *
516 AAAATC-ATCGAACCC-AAAGTATAATGTAATATGTAATTTTTCAATCTAATCGGTATAATTATA
128 -AAATCAATCGAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATA
*
579 CCGGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACAC-TAGTTTGTGTCG-ATATTTTTTC
192 CCCGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACATAGTTTGTGTCGTATATTTTTTC
642 CCAGAATGAATGGAAAACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCC
257 CCAGAATGAATGG-AAA-AAGGTGCA-CCATAAAGTGTCGATCCATATATAAAAA--GTCGATCC
*
707 CAAAAATCATCGAACCCAAAAGTATAATGTAATATGTATTTTTCAATCTAACGGTACAATTATAC
317 C-AAAATCATCGAACCCAAAAGTATAATGTAATATGTATTTTTCAATCTAACCGTACAATTATAC
772 G
381 G
773 GTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATA
1 GTTTTATGAGAGAATA-GTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATA
831 CTAATTTAAA
Statistics
Matches: 419, Mismatches: 12, Indels: 24
0.92 0.03 0.05
Matches are distributed among these distances:
381 21 0.05
382 14 0.03
383 8 0.02
384 28 0.07
385 17 0.04
386 105 0.25
387 179 0.43
388 42 0.10
389 5 0.01
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.32
Consensus pattern (381 bp):
GTTTTATGAGAGAATAGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTCC
CGAATGAATGGAAAACAGGGTGCACCCATAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAA
TCAATCGAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCCG
TTTTATGAGAGAATATGTCTAAATAATGTGTCGACACATAGTTTGTGTCGTATATTTTTTCCCAG
AATGAATGGAAAAAGGTGCACCATAAAGTGTCGATCCATATATAAAAAGTCGATCCCAAAATCAT
CGAACCCAAAAGTATAATGTAATATGTATTTTTCAATCTAACCGTACAATTATACG
Found at i:2304 original size:18 final size:18
Alignment explanation
Indices: 2283--2350 Score: 55
Period size: 21 Copynumber: 3.4 Consensus size: 18
2273 AGCGGTCGCA
2283 GAAGATGAAGCTGACGAT
1 GAAGATGAAGCTGACGAT
* *
2301 GAAGATGACGATGATGATGAT
1 GAAGATGA--A-GCTGACGAT
*
2322 GATGACGATGAAGCTGGCGAT
1 GA--A-GATGAAGCTGACGAT
2343 GAAGATGA
1 GAAGATGA
2351 TGACGATGAT
Statistics
Matches: 39, Mismatches: 5, Indels: 12
0.70 0.09 0.21
Matches are distributed among these distances:
18 13 0.33
19 1 0.03
20 1 0.03
21 17 0.44
22 1 0.03
23 1 0.03
24 5 0.13
ACGTcount: A:0.37, C:0.09, G:0.35, T:0.19
Consensus pattern (18 bp):
GAAGATGAAGCTGACGAT
Found at i:2307 original size:6 final size:6
Alignment explanation
Indices: 2283--2380 Score: 70
Period size: 6 Copynumber: 16.3 Consensus size: 6
2273 AGCGGTCGCA
* * * * * *
2283 GAAGAT GAAGCT GACGAT GAAGAT GACGAT GATGAT GATGAT GACGAT
1 GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT
* ** * * * * *
2331 GAAGCT GGCGAT GAAGAT GATGAC GATGAT GATGAT GATGAT GAAGAT
1 GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT
2379 GA
1 GA
2381 TGATCCAAAC
Statistics
Matches: 74, Mismatches: 18, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
6 74 1.00
ACGTcount: A:0.37, C:0.07, G:0.35, T:0.21
Consensus pattern (6 bp):
GAAGAT
Found at i:2318 original size:3 final size:3
Alignment explanation
Indices: 2298--2384 Score: 84
Period size: 3 Copynumber: 29.0 Consensus size: 3
2288 TGAAGCTGAC
* * * * * ** *
2298 GAT GAA GAT GAC GAT GAT GAT GAT GAT GAC GAT GAA GCT GGC GAT GAA
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
* *
2346 GAT GAT GAC GAT GAT GAT GAT GAT GAT GAA GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
2385 CCAAACAAGT
Statistics
Matches: 65, Mismatches: 19, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
3 65 1.00
ACGTcount: A:0.36, C:0.06, G:0.34, T:0.24
Consensus pattern (3 bp):
GAT
Found at i:2333 original size:42 final size:42
Alignment explanation
Indices: 2286--2376 Score: 146
Period size: 42 Copynumber: 2.2 Consensus size: 42
2276 GGTCGCAGAA
*
2286 GATGAAGCTGACGATGAAGATGACGATGATGATGATGATGAC
1 GATGAAGCTGACGATGAAGATGACGACGATGATGATGATGAC
* * *
2328 GATGAAGCTGGCGATGAAGATGATGACGATGATGATGATGAT
1 GATGAAGCTGACGATGAAGATGACGACGATGATGATGATGAC
2370 GATGAAG
1 GATGAAG
2377 ATGATGATCC
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.35, C:0.08, G:0.35, T:0.22
Consensus pattern (42 bp):
GATGAAGCTGACGATGAAGATGACGACGATGATGATGATGAC
Found at i:2384 original size:18 final size:18
Alignment explanation
Indices: 2283--2380 Score: 88
Period size: 18 Copynumber: 5.4 Consensus size: 18
2273 AGCGGTCGCA
* *
2283 GAAGATGAAGCTGACGAT
1 GAAGATGAAGATGATGAT
*
2301 GAAGATGACGATGATGAT
1 GAAGATGAAGATGATGAT
* * * *
2319 GATGATGACGATGAAGCT
1 GAAGATGAAGATGATGAT
** *
2337 GGCGATGAAGATGATGAC
1 GAAGATGAAGATGATGAT
* *
2355 GATGATGATGATGATGAT
1 GAAGATGAAGATGATGAT
2373 GAAGATGA
1 GAAGATGA
2381 TGATCCAAAC
Statistics
Matches: 63, Mismatches: 17, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 63 1.00
ACGTcount: A:0.37, C:0.07, G:0.35, T:0.21
Consensus pattern (18 bp):
GAAGATGAAGATGATGAT
Found at i:4154 original size:184 final size:184
Alignment explanation
Indices: 3845--4181 Score: 575
Period size: 184 Copynumber: 1.8 Consensus size: 184
3835 CTTTCAACAT
* *
3845 ATTATAATAAAATAGGTAAATTTGCAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
1 ATTATAATAAAATAGATAAATTTGCAATATAACCGGTATAAATATACCGGTCTTATGAGCGAATA
* *
3910 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
66 GGTCTACAACCTATATCGACACTTTATAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAA
*
3975 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
131 AATGTGTCGATACCATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
** * * *
4029 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGCGAATA
1 ATTATAATAAAATAGATAAATTTGCAATATAACCGGTATAAATATACCGGTCTTATGAGCGAATA
*
4094 GGTCTACAACCTATATCGACACTTTATAATATTGTGTCGGTACTTTATGTCCAGATTGGAATAAA
66 GGTCTACAACCTATATCGACACTTTATAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAA
4159 AATGTGTCGATACCATTTAAAAA
131 AATGTGTCGATACCATTTAAAAA
4182 GGTCGGTAAT
Statistics
Matches: 142, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
184 142 1.00
ACGTcount: A:0.36, C:0.14, G:0.16, T:0.34
Consensus pattern (184 bp):
ATTATAATAAAATAGATAAATTTGCAATATAACCGGTATAAATATACCGGTCTTATGAGCGAATA
GGTCTACAACCTATATCGACACTTTATAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAA
AATGTGTCGATACCATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
Found at i:6786 original size:23 final size:23
Alignment explanation
Indices: 6755--6818 Score: 92
Period size: 23 Copynumber: 2.8 Consensus size: 23
6745 ATAGGTAAAC
*
6755 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGCCCTT
* **
6778 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCCCTT
6801 ATATAATGTAATAGGTAG
1 ATATAATGTAATAGGTAG
6819 TGGTTATATT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.36, C:0.06, G:0.20, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCCCTT
Found at i:6825 original size:23 final size:23
Alignment explanation
Indices: 6755--6827 Score: 85
Period size: 23 Copynumber: 3.2 Consensus size: 23
6745 ATAGGTAAAC
* **
6755 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGTGCTT
*
6778 ATATAATGTAATAGGTA-TCGTTT
1 ATATAATGTAATAGGTAGT-GCTT
*
6801 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGTGCTT
6824 ATAT
1 ATAT
6828 TGTAAAGTGT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
23 42 0.98
24 1 0.02
ACGTcount: A:0.34, C:0.05, G:0.21, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGTGCTT
Found at i:6855 original size:20 final size:20
Alignment explanation
Indices: 6830--6868 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
6820 GGTTATATTG
* *
6830 TAAAGTGTCTATCCTTTTTA
1 TAAAGTGTCCATACTTTTTA
6850 TAAAGTGTCCATACTTTTT
1 TAAAGTGTCCATACTTTTT
6869 TCACTGTGGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.26, C:0.15, G:0.10, T:0.49
Consensus pattern (20 bp):
TAAAGTGTCCATACTTTTTA
Found at i:7213 original size:23 final size:24
Alignment explanation
Indices: 7182--7254 Score: 98
Period size: 23 Copynumber: 3.2 Consensus size: 24
7172 ATAGGTAAAC
*
7182 ATATGATGTAATAGGTAGTC-CTT
1 ATATAATGTAATAGGTAGTCGCTT
*
7205 ATATAATGTAATAGGTA-TCGTTT
1 ATATAATGTAATAGGTAGTCGCTT
*
7228 ATATAATGTAATAGGTAGT-GGTT
1 ATATAATGTAATAGGTAGTCGCTT
7251 ATAT
1 ATAT
7255 TGTAAAGTGT
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
22 2 0.04
23 42 0.93
24 1 0.02
ACGTcount: A:0.34, C:0.04, G:0.21, T:0.41
Consensus pattern (24 bp):
ATATAATGTAATAGGTAGTCGCTT
Found at i:7551 original size:25 final size:25
Alignment explanation
Indices: 7517--7567 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
7507 ACAACAAATC
*
7517 AATTAAACATTGTTGTGGGTACATT
1 AATTAAACATTGTTATGGGTACATT
*
7542 AATTGAACATTGTTATGGGTACATT
1 AATTAAACATTGTTATGGGTACATT
7567 A
1 A
7568 TTTGGATTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.39
Consensus pattern (25 bp):
AATTAAACATTGTTATGGGTACATT
Found at i:7836 original size:18 final size:18
Alignment explanation
Indices: 7815--7851 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
7805 GTAATTGGAG
7815 TTTGAATTTAAATTTCAA
1 TTTGAATTTAAATTTCAA
* *
7833 TTTGAGTTTGAATTTCAA
1 TTTGAATTTAAATTTCAA
7851 T
1 T
7852 ATATATTTCG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.32, C:0.05, G:0.11, T:0.51
Consensus pattern (18 bp):
TTTGAATTTAAATTTCAA
Found at i:7859 original size:24 final size:24
Alignment explanation
Indices: 7807--7853 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
7797 TTTCATATGT
* *
7807 AATTGGAGTTTGAATTTAAATTTC
1 AATTTGAGTTTGAATTTAAATATC
*
7831 AATTTGAGTTTGAATTTCAATAT
1 AATTTGAGTTTGAATTTAAATAT
7854 ATATTTCGGC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.34, C:0.04, G:0.15, T:0.47
Consensus pattern (24 bp):
AATTTGAGTTTGAATTTAAATATC
Found at i:8153 original size:39 final size:39
Alignment explanation
Indices: 8110--8196 Score: 156
Period size: 39 Copynumber: 2.2 Consensus size: 39
8100 TCCGATGCTC
*
8110 ATCAAAATCCAAAGCTCATATGGTGCCAAGCAAAAGGAA
1 ATCAAAATCCAAAGCTCATATGATGCCAAGCAAAAGGAA
*
8149 ATCAAAATCCAAATCTCATATGATGCCAAGCAAAAGGAA
1 ATCAAAATCCAAAGCTCATATGATGCCAAGCAAAAGGAA
8188 ATCAAAATC
1 ATCAAAATC
8197 TACAACTTGA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 46 1.00
ACGTcount: A:0.48, C:0.21, G:0.14, T:0.17
Consensus pattern (39 bp):
ATCAAAATCCAAAGCTCATATGATGCCAAGCAAAAGGAA
Found at i:8650 original size:21 final size:23
Alignment explanation
Indices: 8600--8661 Score: 83
Period size: 21 Copynumber: 2.8 Consensus size: 23
8590 ATAGGTAAAC
*
8600 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGCCCTT
* *
8623 ATATAATGTAATAGGTA-TCGTT
1 ATATAATGTAATAGGTAGCCCTT
8645 -TATAATGTAATAGGTAG
1 ATATAATGTAATAGGTAG
8662 TGGTTATATT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
21 16 0.46
22 3 0.09
23 16 0.46
ACGTcount: A:0.35, C:0.06, G:0.21, T:0.37
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCCCTT
Found at i:8668 original size:21 final size:21
Alignment explanation
Indices: 8624--8675 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
8614 GTAGCCCTTA
*
8624 TATAATGTAATAGGTATCGTT
1 TATAATGTAATAGGTATCGGT
8645 TATAATGTAATAGGTAGT-GGT
1 TATAATGTAATAGGTA-TCGGT
*
8666 TATATTGTAA
1 TATAATGTAA
8676 GTGTCTATCC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 27 0.96
22 1 0.04
ACGTcount: A:0.35, C:0.02, G:0.21, T:0.42
Consensus pattern (21 bp):
TATAATGTAATAGGTATCGGT
Found at i:15998 original size:23 final size:23
Alignment explanation
Indices: 15963--16021 Score: 82
Period size: 23 Copynumber: 2.6 Consensus size: 23
15953 ATCTTATATA
*
15963 GCACTACGGTGCAATTCTAAGCG
1 GCACTTCGGTGCAATTCTAAGCG
* * *
15986 GCACTTCGATGCAATTCTACGTG
1 GCACTTCGGTGCAATTCTAAGCG
16009 GCACTTCGGTGCA
1 GCACTTCGGTGCA
16022 TTTATACGAG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.22, C:0.27, G:0.25, T:0.25
Consensus pattern (23 bp):
GCACTTCGGTGCAATTCTAAGCG
Found at i:16029 original size:23 final size:23
Alignment explanation
Indices: 15985--16029 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
15975 AATTCTAAGC
*
15985 GGCACTTCGATGCAATTCTACGT
1 GGCACTTCGATGCAATTATACGT
* *
16008 GGCACTTCGGTGCATTTATACG
1 GGCACTTCGATGCAATTATACG
16030 AGCTGTGGTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.20, C:0.24, G:0.24, T:0.31
Consensus pattern (23 bp):
GGCACTTCGATGCAATTATACGT
Found at i:21275 original size:23 final size:23
Alignment explanation
Indices: 21236--21294 Score: 73
Period size: 23 Copynumber: 2.6 Consensus size: 23
21226 ATCTTATATA
*
21236 GCACTACGGTGCAATTCTACGCG
1 GCACTTCGGTGCAATTCTACGCG
* * * *
21259 GCATTTCTGTGCCATTCTACGTG
1 GCACTTCGGTGCAATTCTACGCG
21282 GCACTTCGGTGCA
1 GCACTTCGGTGCA
21295 TTTATACGAG
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.17, C:0.29, G:0.25, T:0.29
Consensus pattern (23 bp):
GCACTTCGGTGCAATTCTACGCG
Found at i:24216 original size:21 final size:20
Alignment explanation
Indices: 24191--24242 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 20
24181 ATACTCATAG
*
24191 GGGTATCAATACTTGACACTA
1 GGGTATCAATACTTCA-ACTA
* *
24212 GGGTATCGATACTTCAAGTA
1 GGGTATCAATACTTCAACTA
*
24232 GAGTATCAATA
1 GGGTATCAATA
24243 TTACTCACTT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 12 0.46
21 14 0.54
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.29
Consensus pattern (20 bp):
GGGTATCAATACTTCAACTA
Found at i:35681 original size:39 final size:40
Alignment explanation
Indices: 35606--35698 Score: 152
Period size: 39 Copynumber: 2.4 Consensus size: 40
35596 TTGAACGTAT
35606 AAATTATCTTAATACTAAAGTTTTTTTCATATATTGTACG
1 AAATTATCTTAATACTAAAGTTTTTTTCATATATTGTACG
* * *
35646 AACTTATCTGAATATTAAAG-TTTTTTCATATATTGTACG
1 AAATTATCTTAATACTAAAGTTTTTTTCATATATTGTACG
35685 AAATTATCTTAATA
1 AAATTATCTTAATA
35699 AAGTTTAACA
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
39 31 0.65
40 17 0.35
ACGTcount: A:0.37, C:0.10, G:0.08, T:0.46
Consensus pattern (40 bp):
AAATTATCTTAATACTAAAGTTTTTTTCATATATTGTACG
Found at i:35924 original size:21 final size:20
Alignment explanation
Indices: 35839--35995 Score: 84
Period size: 21 Copynumber: 7.8 Consensus size: 20
35829 AATGACCAAT
** *
35839 AAAATCGCAACGCGA-AATA
1 AAAATCGCAACGCGATTTTC
***
35858 AAAATCGCAACGCGATCCCC
1 AAAATCGCAACGCGATTTTC
* ** *
35878 AGAATCGCAAATC-AGTTTCC
1 AAAATCGCAACGCGA-TTTTC
*
35898 AAAATCGCAACGCGATTCTTG
1 AAAATCGCAACGCGATT-TTC
* * *
35919 AAAATCGCAATGCGATAGTAC
1 AAAATCGCAACGCGAT-TTTC
* **
35940 AAATTCGCATTGCGATTTTCC
1 AAAATCGCAACGCGATTTT-C
* * *
35961 AAAATCGCAACGCGAATATG
1 AAAATCGCAACGCGATTTTC
35981 AAAATCGCAACGCGA
1 AAAATCGCAACGCGA
35996 ACACATAAAT
Statistics
Matches: 104, Mismatches: 28, Indels: 11
0.73 0.20 0.08
Matches are distributed among these distances:
19 16 0.15
20 41 0.39
21 47 0.45
ACGTcount: A:0.39, C:0.25, G:0.17, T:0.19
Consensus pattern (20 bp):
AAAATCGCAACGCGATTTTC
Found at i:36024 original size:20 final size:20
Alignment explanation
Indices: 35962--36155 Score: 221
Period size: 20 Copynumber: 9.7 Consensus size: 20
35952 CGATTTTCCA
* ** *
35962 AAATCGCAACGCGAATATGA
1 AAATCGCAACGCGTATCCGT
* *
35982 AAATCGCAACGCG-AACACAT
1 AAATCGCAACGCGTATC-CGT
36002 AAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
36022 AAATCGCAACGTGTATCCGT
1 AAATCGCAACGCGTATCCGT
**
36042 AAATCGCAACGCGTATGGGT
1 AAATCGCAACGCGTATCCGT
*
36062 AAATCGCAATGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
36082 ATATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
* * *
36102 AAATCGCAACG-ATAATACAT
1 AAATCGCAACGCGT-ATCCGT
36122 AAAATCGCAACGCGTATCCGT
1 -AAATCGCAACGCGTATCCGT
36143 AAATCGCAACGCG
1 AAATCGCAACGCG
36156 ATATTTAAAG
Statistics
Matches: 146, Mismatches: 23, Indels: 10
0.82 0.13 0.06
Matches are distributed among these distances:
19 2 0.01
20 126 0.86
21 17 0.12
22 1 0.01
ACGTcount: A:0.36, C:0.26, G:0.20, T:0.19
Consensus pattern (20 bp):
AAATCGCAACGCGTATCCGT
Found at i:36046 original size:60 final size:60
Alignment explanation
Indices: 35962--36155 Score: 253
Period size: 60 Copynumber: 3.2 Consensus size: 60
35952 CGATTTTCCA
* ** * *
35962 AAATCGCAACGCGAATATGAAAATCGCAACGCGAACACATAAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGTAAATCGCAACGCGAATACATAAATCGCAACGCGTATCCGT
* * *** *
36022 AAATCGCAACGTGTATCCGTAAATCGCAACGCGTATGGGTAAATCGCAATGCGTATCCGT
1 AAATCGCAACGCGTATCCGTAAATCGCAACGCGAATACATAAATCGCAACGCGTATCCGT
* **
36082 ATATCGCAACGCGTATCCGTAAATCGCAACGATAATACATAAAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGTAAATCGCAACGCGAATACAT-AAATCGCAACGCGTATCCGT
36143 AAATCGCAACGCG
1 AAATCGCAACGCG
36156 ATATTTAAAG
Statistics
Matches: 112, Mismatches: 21, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
60 81 0.72
61 31 0.28
ACGTcount: A:0.36, C:0.26, G:0.20, T:0.19
Consensus pattern (60 bp):
AAATCGCAACGCGTATCCGTAAATCGCAACGCGAATACATAAATCGCAACGCGTATCCGT
Found at i:36702 original size:20 final size:20
Alignment explanation
Indices: 36654--36763 Score: 99
Period size: 21 Copynumber: 5.8 Consensus size: 20
36644 TGCAGAAGAG
*
36654 TCGCAACGAGATAAATGAAAA
1 TCGCAACGAGA-GAATGAAAA
* ***
36675 TCGTAACGAGAGAATGACTG
1 TCGCAACGAGAGAATGAAAA
36695 TCGCAACGAGAGAAATGAAAA
1 TCGCAACGAGAG-AATGAAAA
36716 TCGCAAC--GAG-A-G--AA
1 TCGCAACGAGAGAATGAAAA
*
36730 TCGCAACGCGA-AATGAAAA
1 TCGCAACGAGAGAATGAAAA
36749 TCGCAACGAGAGAAT
1 TCGCAACGAGAGAAT
36764 CGCAACGCGA
Statistics
Matches: 71, Mismatches: 10, Indels: 17
0.72 0.10 0.17
Matches are distributed among these distances:
14 9 0.13
16 4 0.06
17 2 0.03
19 15 0.21
20 19 0.27
21 22 0.31
ACGTcount: A:0.45, C:0.17, G:0.25, T:0.13
Consensus pattern (20 bp):
TCGCAACGAGAGAATGAAAA
Found at i:36711 original size:41 final size:41
Alignment explanation
Indices: 36653--36763 Score: 139
Period size: 41 Copynumber: 2.9 Consensus size: 41
36643 TTGCAGAAGA
* *
36653 GTCGCAACGAGATAAATGAAAATCGTAACGAGAGAATGACT
1 GTCGCAACGAGAGAAATGAAAATCGCAACGAGAGAATGACT
36694 GTCGCAACGAGAGAAATGAAAATCGCAACGAGAG-A--A--
1 GTCGCAACGAGAGAAATGAAAATCGCAACGAGAGAATGACT
*
36730 -TCGCAAC--GCGAAATGAAAATCGCAACGAGAGAAT
1 GTCGCAACGAGAGAAATGAAAATCGCAACGAGAGAAT
36764 CGCAACGCGA
Statistics
Matches: 65, Mismatches: 3, Indels: 10
0.83 0.04 0.13
Matches are distributed among these distances:
33 23 0.35
34 1 0.02
35 7 0.11
38 1 0.02
40 1 0.02
41 32 0.49
ACGTcount: A:0.45, C:0.17, G:0.25, T:0.13
Consensus pattern (41 bp):
GTCGCAACGAGAGAAATGAAAATCGCAACGAGAGAATGACT
Found at i:36733 original size:14 final size:14
Alignment explanation
Indices: 36714--36770 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
36704 GAGAAATGAA
36714 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
36728 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
36747 AATCGCAACGAGAG
1 AATCGCAACGAGAG
36761 AATCGCAACG
1 AATCGCAACG
36771 CGAAACCAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 20 0.56
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.28
ACGTcount: A:0.44, C:0.23, G:0.25, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:36746 original size:33 final size:33
Alignment explanation
Indices: 36706--36786 Score: 144
Period size: 33 Copynumber: 2.5 Consensus size: 33
36696 CGCAACGAGA
36706 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
36739 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
**
36772 GAAACCAAAATCGCA
1 GAAATGAAAATCGCA
36787 TTGCGATTTT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 46 1.00
ACGTcount: A:0.47, C:0.22, G:0.22, T:0.09
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:36804 original size:19 final size:19
Alignment explanation
Indices: 36782--36879 Score: 90
Period size: 19 Copynumber: 5.7 Consensus size: 19
36772 GAAACCAAAA
*
36782 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
36801 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
*
36815 TCTCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
36834 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* *
36848 TCTCGTTGCGATTGTCATT
1 TCGCGTTGCGATTTTCATT
36867 TCGCGTTGCGATT
1 TCGCGTTGCGATT
36880 CTCTCGTTGC
Statistics
Matches: 63, Mismatches: 6, Indels: 20
0.71 0.07 0.22
Matches are distributed among these distances:
14 20 0.32
16 5 0.08
17 6 0.10
19 32 0.51
ACGTcount: A:0.10, C:0.23, G:0.22, T:0.44
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:36823 original size:14 final size:14
Alignment explanation
Indices: 36804--36893 Score: 72
Period size: 14 Copynumber: 5.7 Consensus size: 14
36794 TTTCATTTCG
36804 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
36818 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
36837 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
36851 CGTTGCGATTGTCATTTCG
1 CGTTGCGA-T-TC---TCT
36870 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
36884 CGTTGCGATT
1 CGTTGCGATT
36894 TTCATTTCAA
Statistics
Matches: 62, Mismatches: 4, Indels: 20
0.72 0.05 0.23
Matches are distributed among these distances:
14 30 0.48
15 1 0.02
16 5 0.08
17 5 0.08
18 1 0.02
19 20 0.32
ACGTcount: A:0.09, C:0.24, G:0.23, T:0.43
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:36829 original size:33 final size:33
Alignment explanation
Indices: 36787--36901 Score: 221
Period size: 33 Copynumber: 3.5 Consensus size: 33
36777 CAAAATCGCA
36787 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
36820 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
*
36853 TTGCGATTGTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
36886 TTGCGATTTTCATTTC
1 TTGCGATTTTCATTTC
36902 AACCCAAAGA
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 80 1.00
ACGTcount: A:0.10, C:0.23, G:0.21, T:0.46
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
Found at i:38757 original size:93 final size:93
Alignment explanation
Indices: 38598--39066 Score: 922
Period size: 93 Copynumber: 5.1 Consensus size: 93
38588 TAGATTGCTT
*
38598 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
38663 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
38691 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
38756 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
38784 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
38849 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
38877 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
38942 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
38970 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
39035 TTTGTCTTTGTTTTGTCTTTTGGTTG-A
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
39062 AGTAA
1 AGTAA
39067 TGCAATCCAT
Statistics
Matches: 375, Mismatches: 1, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
92 6 0.02
93 369 0.98
ACGTcount: A:0.22, C:0.13, G:0.19, T:0.46
Consensus pattern (93 bp):
AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
TTTGTCTTTGTTTTGTCTTTTGGTTGAA
Found at i:39158 original size:19 final size:19
Alignment explanation
Indices: 39114--39242 Score: 107
Period size: 19 Copynumber: 7.3 Consensus size: 19
39104 TAGTTTACTT
* *
39114 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAAC-CAAAA
39134 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
* **
39153 TTGCAACGCGAAATGAAAA
1 TCGCAACGCGAAACCAAAA
*
39172 TCGCAA--CG--A-CAGAA
1 TCGCAACGCGAAACCAAAA
39186 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
*
39205 TCGCAA--CG--A-CAAGA
1 TCGCAACGCGAAACCAAAA
*
39219 TCGCAAAGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
39238 TCGCA
1 TCGCA
39243 TTGCGATTTT
Statistics
Matches: 88, Mismatches: 11, Indels: 21
0.73 0.09 0.17
Matches are distributed among these distances:
14 19 0.22
15 2 0.02
16 4 0.05
17 4 0.05
18 2 0.02
19 44 0.50
20 13 0.15
ACGTcount: A:0.47, C:0.27, G:0.17, T:0.09
Consensus pattern (19 bp):
TCGCAACGCGAAACCAAAA
Found at i:39197 original size:33 final size:33
Alignment explanation
Indices: 39155--39242 Score: 133
Period size: 33 Copynumber: 2.7 Consensus size: 33
39145 AACCAAAATT
**
39155 GCAACGCGAAATGAAAATCGCAACGAC-AGAATC
1 GCAACGCGAAACCAAAATCGCAACGACAAG-ATC
39188 GCAACGCGAAACCAAAATCGCAACGACAAGATC
1 GCAACGCGAAACCAAAATCGCAACGACAAGATC
*
39221 GCAAAGCGAAACCAAAATCGCA
1 GCAACGCGAAACCAAAATCGCA
39243 TTGCGATTTT
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
33 49 0.96
34 2 0.04
ACGTcount: A:0.47, C:0.27, G:0.19, T:0.07
Consensus pattern (33 bp):
GCAACGCGAAACCAAAATCGCAACGACAAGATC
Found at i:39240 original size:52 final size:51
Alignment explanation
Indices: 39130--39242 Score: 131
Period size: 52 Copynumber: 2.2 Consensus size: 51
39120 CACGAAACTT
* * *
39130 AAAATCGCAACGCGAAACCAAAATTGCAACGCGAAATGAAAATCGCAACGAC
1 AAAATCGCAACGCGAAACCAAAATCGCAACGCGAAATGAAAAGCGAAAC-AC
* *
39182 AGAATCGCAACGCGAAACCAAAATCGCAACGAC-AAGATCGCAAAGCGAAAC-C
1 AAAATCGCAACGCGAAACCAAAATCGCAACG-CGAA-AT-GAAAAGCGAAACAC
39234 AAAATCGCA
1 AAAATCGCA
39243 TTGCGATTTT
Statistics
Matches: 52, Mismatches: 6, Indels: 6
0.81 0.09 0.09
Matches are distributed among these distances:
52 40 0.77
53 3 0.06
54 9 0.17
ACGTcount: A:0.48, C:0.27, G:0.18, T:0.08
Consensus pattern (51 bp):
AAAATCGCAACGCGAAACCAAAATCGCAACGCGAAATGAAAAGCGAAACAC
Found at i:39260 original size:19 final size:19
Alignment explanation
Indices: 39238--39357 Score: 126
Period size: 19 Copynumber: 6.6 Consensus size: 19
39228 GAAACCAAAA
*
39238 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
39257 TCGCGTTGCGA--TTC-TT
1 TCGCGTTGCGATTTTCATT
**
39273 T--CGTTGCGATTTTGGTT
1 TCGCGTTGCGATTTTCATT
39290 TCGCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
**
39309 TCGCGTTGCGA-TTTGGTT
1 TCGCGTTGCGATTTTCATT
*
39327 TCGCGTTGCGATTTTAAGTT
1 TCGCGTTGCGATTTTCA-TT
*
39347 TCGTGTTGCGA
1 TCGCGTTGCGA
39358 AAGTAAACTA
Statistics
Matches: 85, Mismatches: 9, Indels: 13
0.79 0.08 0.12
Matches are distributed among these distances:
14 8 0.09
16 5 0.06
17 6 0.07
18 16 0.19
19 38 0.45
20 12 0.14
ACGTcount: A:0.10, C:0.18, G:0.26, T:0.46
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:39321 original size:52 final size:56
Alignment explanation
Indices: 39238--39357 Score: 167
Period size: 52 Copynumber: 2.2 Consensus size: 56
39228 GAAACCAAAA
* *
39238 TCGCATTGCGATTTTCATTTCGCGTTGCGA-TT-CTTT-CGTTGCGATTTT-GGTT
1 TCGCGTTGCGATTTTCATTTCGCGTTGCGATTTGCTTTCCGTTGCGATTTTAAGTT
*
39290 TCGCGTTGCGATTTTCATTTCGCGTTGCGATTTGGTTTCGCGTTGCGATTTTAAGTT
1 TCGCGTTGCGATTTTCATTTCGCGTTGCGATTTGCTTTC-CGTTGCGATTTTAAGTT
*
39347 TCGTGTTGCGA
1 TCGCGTTGCGA
39358 AAGTAAACTA
Statistics
Matches: 59, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
52 29 0.49
53 2 0.03
54 3 0.05
56 12 0.20
57 13 0.22
ACGTcount: A:0.10, C:0.18, G:0.26, T:0.46
Consensus pattern (56 bp):
TCGCGTTGCGATTTTCATTTCGCGTTGCGATTTGCTTTCCGTTGCGATTTTAAGTT
Found at i:39333 original size:37 final size:38
Alignment explanation
Indices: 39238--39357 Score: 144
Period size: 33 Copynumber: 3.3 Consensus size: 38
39228 GAAACCAAAA
* **
39238 TCGCATTGCGATTTTCATTTCGCGTTGCGA--TTC-TT
1 TCGCGTTGCGATTTTGGTTTCGCGTTGCGATTTTCATT
39273 T--CGTTGCGATTTTGGTTTCGCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTGGTTTCGCGTTGCGATTTTCATT
*
39309 TCGCGTTGCGA-TTTGGTTTCGCGTTGCGATTTTAAGTT
1 TCGCGTTGCGATTTTGGTTTCGCGTTGCGATTTTCA-TT
*
39347 TCGTGTTGCGA
1 TCGCGTTGCGA
39358 AAGTAAACTA
Statistics
Matches: 74, Mismatches: 5, Indels: 9
0.84 0.06 0.10
Matches are distributed among these distances:
33 24 0.32
35 4 0.05
36 3 0.04
37 23 0.31
38 20 0.27
ACGTcount: A:0.10, C:0.18, G:0.26, T:0.46
Consensus pattern (38 bp):
TCGCGTTGCGATTTTGGTTTCGCGTTGCGATTTTCATT
Found at i:41297 original size:14 final size:14
Alignment explanation
Indices: 41278--41313 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
41268 ATTGTTTAAT
41278 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
*
41292 TGATTTGTAAAAGT
1 TGATTTGTAAAAGA
41306 TGATTTGT
1 TGATTTGT
41314 GTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:41436 original size:19 final size:19
Alignment explanation
Indices: 41420--41517 Score: 143
Period size: 19 Copynumber: 5.4 Consensus size: 19
41410 AAAAATGACT
41420 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
41439 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
41458 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
41472 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
41491 ATCGCAATGCGGAAATGAAA
1 ATCGCAATGC-GAAATGAAA
41511 ATCGCAA
1 ATCGCAA
41518 CGAGAGAATC
Statistics
Matches: 71, Mismatches: 2, Indels: 11
0.85 0.02 0.13
Matches are distributed among these distances:
14 10 0.14
15 1 0.01
16 2 0.03
17 2 0.03
18 1 0.01
19 39 0.55
20 16 0.23
ACGTcount: A:0.46, C:0.17, G:0.22, T:0.14
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:41549 original size:53 final size:53
Alignment explanation
Indices: 41420--41536 Score: 227
Period size: 53 Copynumber: 2.2 Consensus size: 53
41410 AAAAATGACT
41420 ATCGCAATGCGAAATGAAAATCGCAATGC-GAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGA
41472 ATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGA
41525 ATCGCAATGCGA
1 ATCGCAATGCGA
41537 TTTTCATTTC
Statistics
Matches: 64, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
52 29 0.45
53 35 0.55
ACGTcount: A:0.44, C:0.18, G:0.24, T:0.14
Consensus pattern (53 bp):
ATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGA
Found at i:41554 original size:19 final size:19
Alignment explanation
Indices: 41526--41766 Score: 270
Period size: 19 Copynumber: 13.7 Consensus size: 19
41516 AACGAGAGAA
*
41526 TCGCAATGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
41545 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
41564 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
*
41583 TCGCATTGCGA--TT-ATC
1 TCGCATTGCGATTTTCATT
41599 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
41616 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
*
41635 TCGCATTGCGA--TTC-TC
1 TCGCATTGCGATTTTCATT
41651 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
41668 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
*
41687 TCGCATTGCGA--TTC-TC
1 TCGCATTGCGATTTTCATT
*
41703 TCG--TTGCGATTTTTATT
1 TCGCATTGCGATTTTCATT
41720 TCCGCATTGCGATTTTCA--
1 T-CGCATTGCGATTTTCATT
*
41738 T-G--TTGGGATTTTCATT
1 TCGCATTGCGATTTTCATT
*
41754 TTGCATTGCGATT
1 TCGCATTGCGATT
41767 CTCTCGTTGC
Statistics
Matches: 190, Mismatches: 11, Indels: 42
0.78 0.05 0.17
Matches are distributed among these distances:
14 29 0.15
16 22 0.12
17 20 0.11
18 3 0.02
19 105 0.55
20 11 0.06
ACGTcount: A:0.15, C:0.21, G:0.18, T:0.46
Consensus pattern (19 bp):
TCGCATTGCGATTTTCATT
Found at i:41608 original size:52 final size:52
Alignment explanation
Indices: 41550--41738 Score: 351
Period size: 52 Copynumber: 3.6 Consensus size: 52
41540 TCATTTCGCA
*
41550 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTATCTCG
1 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCG
41602 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCG
41654 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCG
*
41706 TTGCGATTTTTATTTCCGCATTGCGATTTTCAT
1 TTGCGATTTTCATTT-CGCATTGCGATTTTCAT
41739 GTTGGGATTT
Statistics
Matches: 134, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
52 117 0.87
53 17 0.13
ACGTcount: A:0.14, C:0.22, G:0.17, T:0.47
Consensus pattern (52 bp):
TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCG
Found at i:41611 original size:33 final size:33
Alignment explanation
Indices: 41532--41780 Score: 218
Period size: 33 Copynumber: 7.2 Consensus size: 33
41522 AGAATCGCAA
*
41532 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCAT
1 TGCGATTTTCATTTCGCATTGCGA--TT-ATCTCG--T
41570 TGCGATTTTCATTTCGCATTGCGATTATCTCGT
1 TGCGATTTTCATTTCGCATTGCGATTATCTCGT
*
41603 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCAT
1 TGCGATTTTCATTTCGCATTGCGA--TT-ATCTCG--T
* * * * *
41641 TGCGATTCTCTCGTTGCG-ATTTTC-ATT-TCGCAT
1 TGCGATT-T-TCATTTCGCA-TTGCGATTATCTCGT
*
41674 TGCGATTTTCATTTCGCATTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCATTGCGATTATCTCGT
* *
41707 TGCGATTTTTATTTCCGCATTGCGATTTTCAT-GT
1 TGCGATTTTCATTT-CGCATTGCGATTATC-TCGT
* * *
41741 TGGGATTTTCATTTTGCATTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCATTGCGATTATCTCGT
41774 TGCGATT
1 TGCGATT
41781 GTAATTTCCG
Statistics
Matches: 177, Mismatches: 20, Indels: 33
0.77 0.09 0.14
Matches are distributed among these distances:
31 9 0.05
32 6 0.03
33 71 0.40
34 28 0.16
35 10 0.06
36 7 0.04
37 2 0.01
38 32 0.18
39 3 0.02
40 9 0.05
ACGTcount: A:0.14, C:0.21, G:0.18, T:0.47
Consensus pattern (33 bp):
TGCGATTTTCATTTCGCATTGCGATTATCTCGT
Found at i:44307 original size:24 final size:24
Alignment explanation
Indices: 44273--44319 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
44263 CTGAAACATC
44273 ATCAAAATCCGTG-TATTGACCAAT
1 ATCAAAATCCG-GATATTGACCAAT
*
44297 ATCAAAGTCCGGATATTGACCAA
1 ATCAAAATCCGGATATTGACCAA
44320 GACCAAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (24 bp):
ATCAAAATCCGGATATTGACCAAT
Found at i:45030 original size:20 final size:20
Alignment explanation
Indices: 45002--45251 Score: 250
Period size: 20 Copynumber: 12.5 Consensus size: 20
44992 AAATTTCAGT
* ** *
45002 GTTGTGATTTACATATTCTC
1 GTTGCGATTTACGGATTCGC
**
45022 GTTGCGATTTACGGATTATC
1 GTTGCGATTTACGGATTCGC
**
45042 GTTGCGATTTACGGATTATC
1 GTTGCGATTTACGGATTCGC
* *
45062 GTTGCGATTTACAGATTCTC
1 GTTGCGATTTACGGATTCGC
**
45082 GTTGCGATTTACGGATTATC
1 GTTGCGATTTACGGATTCGC
*
45102 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATTCGC
* *
45122 GTTGCGATATACGGATACGC
1 GTTGCGATTTACGGATTCGC
* ** *
45142 ATTGCGATTTACCCATACGC
1 GTTGCGATTTACGGATTCGC
* *
45162 GTTGCGATTTACGGATACAC
1 GTTGCGATTTACGGATTCGC
*
45182 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATTCGC
*
45202 GTTGCGATTTATGTG-TTCGC
1 GTTGCGATTTACG-GATTCGC
* **
45222 GTTGCGATTTTCATATTCGC
1 GTTGCGATTTACGGATTCGC
45242 GTTGCGATTT
1 GTTGCGATTT
45252 TGGAAAATCG
Statistics
Matches: 201, Mismatches: 27, Indels: 4
0.87 0.12 0.02
Matches are distributed among these distances:
20 200 1.00
21 1 0.00
ACGTcount: A:0.20, C:0.18, G:0.24, T:0.38
Consensus pattern (20 bp):
GTTGCGATTTACGGATTCGC
Found at i:45268 original size:21 final size:21
Alignment explanation
Indices: 45238--45320 Score: 78
Period size: 21 Copynumber: 4.0 Consensus size: 21
45228 ATTTTCATAT
*
45238 TCGCGTTGCGATTTTGGAAAA
1 TCGCATTGCGATTTTGGAAAA
* * * **
45259 TCGCAATGCGAATTTGTACTA
1 TCGCATTGCGATTTTGGAAAA
*
45280 TCGCATTGCGATTTT-CAAGAA
1 TCGCATTGCGATTTTGGAA-AA
*
45301 TCGCGTTGCGATTTTGGAAA
1 TCGCATTGCGATTTTGGAAA
45321 CTGATTTGCG
Statistics
Matches: 47, Mismatches: 13, Indels: 4
0.73 0.20 0.06
Matches are distributed among these distances:
20 1 0.02
21 44 0.94
22 2 0.04
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (21 bp):
TCGCATTGCGATTTTGGAAAA
Found at i:45311 original size:42 final size:43
Alignment explanation
Indices: 45218--45316 Score: 100
Period size: 42 Copynumber: 2.4 Consensus size: 43
45208 ATTTATGTGT
* *
45218 TCGCGTTGCG-ATTT-TCATATTCGCGTTGCGATTTTGGAAAA
1 TCGCGTTGCGAATTTGTCATATTCGCATTGCGATTTTGCAAAA
**
45259 TCGCAATGCGAATTTGT-ACTA-TCGCATTGCGATTTT-CAAGAA
1 TCGCGTTGCGAATTTGTCA-TATTCGCATTGCGATTTTGCAA-AA
*
45301 TCGCGTTGCGATTTTG
1 TCGCGTTGCGAATTTG
45317 GAAACTGATT
Statistics
Matches: 47, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
41 10 0.21
42 34 0.72
43 3 0.06
ACGTcount: A:0.21, C:0.18, G:0.23, T:0.37
Consensus pattern (43 bp):
TCGCGTTGCGAATTTGTCATATTCGCATTGCGATTTTGCAAAA
Found at i:45613 original size:13 final size:13
Alignment explanation
Indices: 45595--45637 Score: 59
Period size: 13 Copynumber: 3.2 Consensus size: 13
45585 TTTTTTTTAT
45595 TAATATATAATTA
1 TAATATATAATTA
45608 TAATATATATATTA
1 TAATATATA-ATTA
*
45622 TGAATATTTAATTA
1 T-AATATATAATTA
45636 TA
1 TA
45638 GCCTATAATA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
13 10 0.37
14 10 0.37
15 7 0.26
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (13 bp):
TAATATATAATTA
Found at i:45615 original size:15 final size:15
Alignment explanation
Indices: 45597--45637 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
45587 TTTTTTATTA
45597 ATATATAATTATAAT
1 ATATATAATTATAAT
45612 ATATAT-ATTATGAAT
1 ATATATAATTAT-AAT
45627 AT-T-TAATTATA
1 ATATATAATTATA
45638 GCCTATAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
13 2 0.08
14 11 0.46
15 11 0.46
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (15 bp):
ATATATAATTATAAT
Found at i:46232 original size:47 final size:47
Alignment explanation
Indices: 46136--46225 Score: 128
Period size: 47 Copynumber: 1.9 Consensus size: 47
46126 GATTGTTGTC
* * *
46136 TCTCTTCATGGTTGATTAATTTATGTAACTTTGGATTGTGAAGCGTA
1 TCTCTTCATGGCTGATTAATTTATATAACTTTGGATTATGAAGCGTA
*
46183 TCTCTTCATGGCTGATTAATTTCTATAACTTTTGG-TTATGAAG
1 TCTCTTCATGGCTGATTAATTTATATAAC-TTTGGATTATGAAG
46226 GTTATCTATG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
47 33 0.87
48 5 0.13
ACGTcount: A:0.23, C:0.12, G:0.19, T:0.46
Consensus pattern (47 bp):
TCTCTTCATGGCTGATTAATTTATATAACTTTGGATTATGAAGCGTA
Found at i:49350 original size:24 final size:24
Alignment explanation
Indices: 49318--49370 Score: 97
Period size: 24 Copynumber: 2.2 Consensus size: 24
49308 TGCTAGGGAT
49318 TAAGGAGGGTTTTAAAACGCTTCC
1 TAAGGAGGGTTTTAAAACGCTTCC
*
49342 TAAGGAGGGTTTTAAAATGCTTCC
1 TAAGGAGGGTTTTAAAACGCTTCC
49366 TAAGG
1 TAAGG
49371 CTAGAAATAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.30, C:0.13, G:0.26, T:0.30
Consensus pattern (24 bp):
TAAGGAGGGTTTTAAAACGCTTCC
Found at i:50088 original size:28 final size:28
Alignment explanation
Indices: 50021--50109 Score: 99
Period size: 28 Copynumber: 3.1 Consensus size: 28
50011 CCTACAGTAG
50021 ATTTTT-GTCAAAATAAGTACCTAAACTTAT
1 ATTTTTGGTCAAAATAAGTACCTAAA---AT
* * *
50051 CTTTTTGGTCAAAATAGGTACATAAAAT
1 ATTTTTGGTCAAAATAAGTACCTAAAAT
* *
50079 ATTTTTGGTCAACATAAGTACCTAAAGT
1 ATTTTTGGTCAAAATAAGTACCTAAAAT
50107 ATT
1 ATT
50110 CAATTTTCTC
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
28 28 0.56
30 5 0.10
31 17 0.34
ACGTcount: A:0.38, C:0.12, G:0.11, T:0.38
Consensus pattern (28 bp):
ATTTTTGGTCAAAATAAGTACCTAAAAT
Found at i:50231 original size:31 final size:31
Alignment explanation
Indices: 50196--50272 Score: 136
Period size: 31 Copynumber: 2.5 Consensus size: 31
50186 AATACTGACC
*
50196 TATTTTAACCAAAAAGATAAATTTAGATACT
1 TATTTTGACCAAAAAGATAAATTTAGATACT
50227 TATTTTGACCAAAAAGATAAATTTAGATACT
1 TATTTTGACCAAAAAGATAAATTTAGATACT
*
50258 TATTTTGATCAAAAA
1 TATTTTGACCAAAAA
50273 ATACTTTAGG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.47, C:0.09, G:0.08, T:0.36
Consensus pattern (31 bp):
TATTTTGACCAAAAAGATAAATTTAGATACT
Found at i:51546 original size:15 final size:15
Alignment explanation
Indices: 51510--51546 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
51500 ATATTTAGCT
*
51510 GGGCGGACGGATGCG
1 GGGCGGGCGGATGCG
51525 GGGCGGGCGGATGCG
1 GGGCGGGCGGATGCG
51540 GGGCGGG
1 GGGCGGG
51547 TAATGTCTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.08, C:0.19, G:0.68, T:0.05
Consensus pattern (15 bp):
GGGCGGGCGGATGCG
Found at i:54983 original size:2 final size:2
Alignment explanation
Indices: 54976--55060 Score: 170
Period size: 2 Copynumber: 42.5 Consensus size: 2
54966 AAATTTACTC
54976 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
55018 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
55060 A
1 A
55061 ATTCATTACA
Statistics
Matches: 83, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 83 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:58190 original size:23 final size:22
Alignment explanation
Indices: 58157--58203 Score: 67
Period size: 23 Copynumber: 2.1 Consensus size: 22
58147 GGGTTTAAGC
*
58157 TTAAGGGTTTAGAGTTTATGAT
1 TTAAGGGTTTAGAGTTTATAAT
*
58179 TTAAGGGGTTTAGGGTTTATAAT
1 TTAA-GGGTTTAGAGTTTATAAT
58202 TT
1 TT
58204 GTGGTCTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 4 0.18
23 18 0.82
ACGTcount: A:0.26, C:0.00, G:0.28, T:0.47
Consensus pattern (22 bp):
TTAAGGGTTTAGAGTTTATAAT
Found at i:60782 original size:3 final size:3
Alignment explanation
Indices: 60774--60798 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
60764 TATATATATA
60774 TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
60799 TTCTTTTTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:67775 original size:64 final size:63
Alignment explanation
Indices: 67705--67884 Score: 159
Period size: 65 Copynumber: 2.8 Consensus size: 63
67695 TTGAACCCTT
*
67705 AGTGCATCGGTGCA-CTAAGAGTGCATCGATGCATCAAGTGAATTCAATG-TTTCA-AAATAGCC
1 AGTGCATCGGTGCAGCT--G-GTGCATCGATGCATCAAATGAATTCAATGTTTTCATAAA-AGCC
*
67767 AG
62 AC
* * * * *
67769 AGTGCATCGATGCATGGCTGGTGCATCGATGCATCAAATGCATTCGATGTTTTCATAAAATCCTC
1 AGTGCATCGGTGCA--GCTGGTGCATCGATGCATCAAATGAATTCAATGTTTTCATAAAAGCCAC
* * * * *
67834 AGTGCATCGGTGCATGGTAAGTGCATCGATGCATGAAATGCATTCGATGTT
1 AGTGCATCGGTGCA-GCT-GGTGCATCGATGCATCAAATGAATTCAATGTT
67885 CAATTTAATT
Statistics
Matches: 98, Mismatches: 12, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
64 41 0.42
65 52 0.53
66 3 0.03
67 2 0.02
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.28
Consensus pattern (63 bp):
AGTGCATCGGTGCAGCTGGTGCATCGATGCATCAAATGAATTCAATGTTTTCATAAAAGCCAC
Found at i:67858 original size:65 final size:65
Alignment explanation
Indices: 67724--67884 Score: 202
Period size: 65 Copynumber: 2.5 Consensus size: 65
67714 GTGCACTAAG
* * * *
67724 AGTGCATCGATGCATCAAGTGAATTCAATG-TTTCAAAATAGCCAGAGTGCATCGATGCATGGCT
1 AGTGCATCGATGCATCAAATGCATTCGATGTTTTCAAAATAGCCACAGTGCATCGATGCATGGCT
* * * *
67788 GGTGCATCGATGCATCAAATGCATTCGATGTTTTCATAAA-ATCCTCAGTGCATCGGTGCATGG-
1 AGTGCATCGATGCATCAAATGCATTCGATGTTTTCA-AAATAGCCACAGTGCATCGATGCATGGC
67851 T
65 T
*
67852 AAGTGCATCGATGCATGAAATGCATTCGATGTT
1 -AGTGCATCGATGCATCAAATGCATTCGATGTT
67885 CAATTTAATT
Statistics
Matches: 84, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
64 27 0.32
65 54 0.64
66 3 0.04
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.29
Consensus pattern (65 bp):
AGTGCATCGATGCATCAAATGCATTCGATGTTTTCAAAATAGCCACAGTGCATCGATGCATGGCT
Found at i:67923 original size:65 final size:62
Alignment explanation
Indices: 67725--67934 Score: 176
Period size: 65 Copynumber: 3.3 Consensus size: 62
67715 TGCACTAAGA
* * * * *
67725 GTGCATCGATGCATCAAGTGAATTCAATGTTTCA-AAATAGC-CAGAGTGCATCGATGCATGGCT
1 GTGCATCGATGCATCAAATGCATTCGATGTTTCATAAA-ATCTC--AGTGCATC-ATGCATGGTT
67788 G
62 G
* **
67789 GTGCATCGATGCATCAAATGCATTCGATGTTTTCATAAAATCCTCAGTGCATCGGTGCATGGTAA
1 GTGCATCGATGCATCAAATGCATTCGATG-TTTCATAAAAT-CTCAGTGCATC-ATGCATGGTTG
* **
67854 GTGCATCGATGCATGAAATGCATTCGATG-TTCAATTTAAT-TCATGGTGCATCATTGCATGGAT
1 GTGCATCGATGCATCAAATGCATTCGATGTTTC-ATAAAATCTCA--GTGCATCA-TGCATGG-T
67917 TG
61 TG
*
67919 GTGCATCGGTGCATCA
1 GTGCATCGATGCATCA
67935 CTTTGATAAA
Statistics
Matches: 121, Mismatches: 16, Indels: 17
0.79 0.10 0.11
Matches are distributed among these distances:
62 3 0.02
63 3 0.02
64 45 0.37
65 65 0.54
66 4 0.03
67 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (62 bp):
GTGCATCGATGCATCAAATGCATTCGATGTTTCATAAAATCTCAGTGCATCATGCATGGTTG
Found at i:68165 original size:21 final size:21
Alignment explanation
Indices: 68139--68182 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
68129 AAATTCATCT
68139 AAACTTAATTTGTTATATCGA
1 AAACTTAATTTGTTATATCGA
68160 AAACTTAATTTGTTATATCGA
1 AAACTTAATTTGTTATATCGA
68181 AA
1 AA
68183 CACAAAAATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (21 bp):
AAACTTAATTTGTTATATCGA
Found at i:69012 original size:21 final size:21
Alignment explanation
Indices: 68988--69031 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
68978 CCAGAGGAAG
68988 AGGAGAAGCACGAT-AAGAGCT
1 AGGAGAAGCAC-ATGAAGAGCT
* *
69009 AGGAGCAGCTCATGAAGAGCT
1 AGGAGAAGCACATGAAGAGCT
69030 AG
1 AG
69032 CTCCCGGGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 2 0.10
21 18 0.90
ACGTcount: A:0.39, C:0.16, G:0.34, T:0.11
Consensus pattern (21 bp):
AGGAGAAGCACATGAAGAGCT
Found at i:70606 original size:23 final size:22
Alignment explanation
Indices: 70576--70655 Score: 99
Period size: 22 Copynumber: 3.6 Consensus size: 22
70566 GCATGACTCT
70576 GTGCATCGATGCACATTCAAGG
1 GTGCATCGATGCACATTCAAGG
* * *
70598 CGTGCATCGGTGCACCTTC-ATG
1 -GTGCATCGATGCACATTCAAGG
*
70620 GTGTATCGATGCACATTCAAGG
1 GTGCATCGATGCACATTCAAGG
*
70642 ATGCATCGATGCAC
1 GTGCATCGATGCAC
70656 TGTTAGGTGT
Statistics
Matches: 47, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
21 15 0.32
22 16 0.34
23 16 0.34
ACGTcount: A:0.24, C:0.25, G:0.26, T:0.25
Consensus pattern (22 bp):
GTGCATCGATGCACATTCAAGG
Found at i:70630 original size:44 final size:42
Alignment explanation
Indices: 70554--70674 Score: 131
Period size: 43 Copynumber: 2.8 Consensus size: 42
70544 AAAACCCGAC
* *
70554 GGATGCATCGATGCA-TGACTC-TGTGCATCGATGCACATTCAA
1 GGATGCATCGATGCACTG--TCAGGTGTATCGATGCACATTCAA
* *
70596 GGCGTGCATCGGTGCACCT-TCATGGTGTATCGATGCACATTCAA
1 GG-ATGCATCGATGCA-CTGTCA-GGTGTATCGATGCACATTCAA
*
70640 GGATGCATCGATGCACTGTTAGGTGTATCGATGCA
1 GGATGCATCGATGCACTGTCAGGTGTATCGATGCA
70675 TGAAGCACAA
Statistics
Matches: 66, Mismatches: 7, Indels: 12
0.78 0.08 0.14
Matches are distributed among these distances:
42 20 0.30
43 24 0.36
44 21 0.32
45 1 0.02
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.27
Consensus pattern (42 bp):
GGATGCATCGATGCACTGTCAGGTGTATCGATGCACATTCAA
Found at i:70671 original size:20 final size:21
Alignment explanation
Indices: 70580--70674 Score: 86
Period size: 21 Copynumber: 4.4 Consensus size: 21
70570 GACTCTGTGC
*
70580 ATCGATGCACATTCAAGGCGTGC
1 ATCGATGCACATTCAA-G-GTGT
* * *
70603 ATCGGTGCACCTTCATGGTGT
1 ATCGATGCACATTCAAGGTGT
*
70624 ATCGATGCACATTCAAGGATGC
1 ATCGATGCACATTCAAGG-TGT
*
70646 ATCGATGCAC-TGT-TAGGTGT
1 ATCGATGCACAT-TCAAGGTGT
70666 ATCGATGCA
1 ATCGATGCA
70675 TGAAGCACAA
Statistics
Matches: 60, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
20 11 0.18
21 22 0.37
22 14 0.23
23 13 0.22
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.27
Consensus pattern (21 bp):
ATCGATGCACATTCAAGGTGT
Found at i:76676 original size:65 final size:63
Alignment explanation
Indices: 76478--76687 Score: 171
Period size: 65 Copynumber: 3.3 Consensus size: 63
76468 TGCACTAAGA
* * * * * * *
76478 GTGCATCAATGCATCAAGTACATTTGATGTTTCA-AAATAGC-CAGAGTGCATCGATGTATGGCT
1 GTGCATCGATGCATCAAATGCATTCGATGTTTCATAAA-ATCTC--AGTGCATCGATGCATGGTT
76541 G
63 G
*
76542 GTGCATCGATGCATCAAATGCATTCGATGTTTTCATAAAATCCTCAGTGCATC-AGTGCATGGTA
1 GTGCATCGATGCATCAAATGCATTCGATG-TTTCATAAAAT-CTCAGTGCATCGA-TGCATGGTT
*
76606 A
63 G
* **
76607 GTGCATCGATGCATGAAATGCATTCGATG-TTCAATTTAAT-TCATGGTGCATCGATGCATGGAT
1 GTGCATCGATGCATCAAATGCATTCGATGTTTC-ATAAAATCTCA--GTGCATCGATGCATGG-T
76670 TG
62 TG
76672 GTGCATC-AGTGCATCA
1 GTGCATCGA-TGCATCA
76688 CTTTGATAAA
Statistics
Matches: 120, Mismatches: 15, Indels: 21
0.77 0.10 0.13
Matches are distributed among these distances:
62 3 0.03
63 3 0.03
64 46 0.38
65 63 0.52
66 4 0.03
67 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (63 bp):
GTGCATCGATGCATCAAATGCATTCGATGTTTCATAAAATCTCAGTGCATCGATGCATGGTTG
Found at i:77502 original size:15 final size:14
Alignment explanation
Indices: 77482--77511 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
77472 TTTAATTTGA
77482 TATTTATCTTTTTAT
1 TATTTAT-TTTTTAT
77497 TATTTATTTTTTAT
1 TATTTATTTTTTAT
77511 T
1 T
77512 TAAAGTGATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.20, C:0.03, G:0.00, T:0.77
Consensus pattern (14 bp):
TATTTATTTTTTAT
Found at i:82357 original size:15 final size:15
Alignment explanation
Indices: 82337--82371 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
82327 TTAATCGATC
82337 GATGGAATTAGCCAA
1 GATGGAATTAGCCAA
82352 GATGGAATTAGCCAA
1 GATGGAATTAGCCAA
82367 GATGG
1 GATGG
82372 GGTGAATTGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.37, C:0.11, G:0.31, T:0.20
Consensus pattern (15 bp):
GATGGAATTAGCCAA
Found at i:83089 original size:64 final size:64
Alignment explanation
Indices: 83036--83198 Score: 211
Period size: 65 Copynumber: 2.5 Consensus size: 64
83026 CGGTGCACCA
*
83036 AGTGTGCATCGATGCATGAAATGCATTCGATGTTTGAAAAATAGCCTG-GTGCATCGATGCATGG
1 AGTGTGCATCGATGCATGAAATGCATTCGATGTTTG-AAAATAGCCAGAGTGCATCGATGCATGG
** * * **
83100 CTTGTGCATCGATGTATCAAATGCATTCGATGTTTTGAAAATATTCAGAGTGCATCGATGCATGG
1 AGTGTGCATCGATGCATGAAATGCATTCGATG-TTTGAAAATAGCCAGAGTGCATCGATGCATGG
* * *
83165 AGAGTGCATCGGTGCATGGAATGCATTCGATGTT
1 AGTGTGCATCGATGCATGAAATGCATTCGATGTT
83199 CAATTAATTC
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
64 38 0.46
65 45 0.54
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (64 bp):
AGTGTGCATCGATGCATGAAATGCATTCGATGTTTGAAAATAGCCAGAGTGCATCGATGCATGG
Found at i:83170 original size:19 final size:19
Alignment explanation
Indices: 83146--83196 Score: 70
Period size: 19 Copynumber: 2.7 Consensus size: 19
83136 GAAAATATTC
83146 AGAGTGCATCGATGCATGG
1 AGAGTGCATCGATGCATGG
*
83165 AGAGTGCATCGGTGCATGG
1 AGAGTGCATCGATGCATGG
83184 A-A-TGCATTCGATG
1 AGAGTGCA-TCGATG
83197 TTCAATTAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 4 0.14
18 6 0.21
19 19 0.66
ACGTcount: A:0.25, C:0.16, G:0.35, T:0.24
Consensus pattern (19 bp):
AGAGTGCATCGATGCATGG
Found at i:84800 original size:44 final size:42
Alignment explanation
Indices: 84686--84803 Score: 119
Period size: 44 Copynumber: 2.7 Consensus size: 42
84676 AAAACCCGAC
* * *
84686 GGATGCATCGGTGCATGGTCTTATGCATCGATGCATATTCAAG
1 GGATGCATCGGTGCATTGT-TAATGCATCGATACATATTCAAG
** * *
84729 TCATGCATCGGTGCATCATGGTGATGCATCGATACATATTCAAAG
1 GGATGCATCGGTGCAT--TGTTAATGCATCGATACATATTC-AAG
*
84774 GGATGCATCGATGCATTGTTAAATGCATCG
1 GGATGCATCGGTGCATTGTT-AATGCATCG
84804 GTGCATGAAG
Statistics
Matches: 60, Mismatches: 11, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
43 17 0.28
44 26 0.43
45 17 0.28
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (42 bp):
GGATGCATCGGTGCATTGTTAATGCATCGATACATATTCAAG
Found at i:88130 original size:22 final size:21
Alignment explanation
Indices: 88104--88150 Score: 53
Period size: 20 Copynumber: 2.2 Consensus size: 21
88094 AAGGTCAAAA
*
88104 ATCAAATTGTTTGAAAATTG-AT
1 ATCAAATGGTTT-AAAA-TGAAT
88126 ATC-AATGGTTTAAAATGAAT
1 ATCAAATGGTTTAAAATGAAT
88146 ATCAA
1 ATCAA
88151 TTACGTTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
19 2 0.09
20 9 0.41
21 8 0.36
22 3 0.14
ACGTcount: A:0.45, C:0.06, G:0.13, T:0.36
Consensus pattern (21 bp):
ATCAAATGGTTTAAAATGAAT
Found at i:88772 original size:19 final size:21
Alignment explanation
Indices: 88738--88777 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
88728 TAAATTCTTC
*
88738 TTCAAAATTTCATTTT-GTTT
1 TTCAAAATTCCATTTTAGTTT
88758 TTCAAAA-TCCATTTTAGTTT
1 TTCAAAATTCCATTTTAGTTT
88778 CTAGAAGAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.28, C:0.12, G:0.05, T:0.55
Consensus pattern (21 bp):
TTCAAAATTCCATTTTAGTTT
Found at i:90281 original size:45 final size:46
Alignment explanation
Indices: 90217--90321 Score: 151
Period size: 45 Copynumber: 2.3 Consensus size: 46
90207 TGCACCAAGT
* *
90217 GTGCATCGATGCATGAAATGCATTCGATG-TTTGAAAAATAGCCTG-
1 GTGCATCGATGCATCAAATGCATTCGATGTTTTG-AAAATAGCCAGA
**
90262 GTGCATCGATGCATCAAATGCATTCGATGTTTTGAAAATATTCAGA
1 GTGCATCGATGCATCAAATGCATTCGATGTTTTGAAAATAGCCAGA
90308 GTGCATCGATGCAT
1 GTGCATCGATGCAT
90322 GGAGAGTGCA
Statistics
Matches: 54, Mismatches: 4, Indels: 3
0.89 0.07 0.05
Matches are distributed among these distances:
45 36 0.67
46 18 0.33
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.30
Consensus pattern (46 bp):
GTGCATCGATGCATCAAATGCATTCGATGTTTTGAAAATAGCCAGA
Found at i:90329 original size:19 final size:19
Alignment explanation
Indices: 90305--90355 Score: 70
Period size: 19 Copynumber: 2.7 Consensus size: 19
90295 GAAAATATTC
90305 AGAGTGCATCGATGCATGG
1 AGAGTGCATCGATGCATGG
*
90324 AGAGTGCATCGGTGCATGG
1 AGAGTGCATCGATGCATGG
90343 A-A-TGCATTCGATG
1 AGAGTGCA-TCGATG
90356 TTCAATTAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 4 0.14
18 6 0.21
19 19 0.66
ACGTcount: A:0.25, C:0.16, G:0.35, T:0.24
Consensus pattern (19 bp):
AGAGTGCATCGATGCATGG
Found at i:96448 original size:21 final size:21
Alignment explanation
Indices: 96408--96448 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
96398 CTTGAAGAAT
*
96408 AAATGAAAAAAATAAAAAAAG
1 AAATGAAAAAAAGAAAAAAAG
96429 AAAT-AAAAAAAGAAATAAAA
1 AAATGAAAAAAAGAAA-AAAA
96449 AGGAAAGGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.83, C:0.00, G:0.07, T:0.10
Consensus pattern (21 bp):
AAATGAAAAAAAGAAAAAAAG
Found at i:96454 original size:11 final size:12
Alignment explanation
Indices: 96413--96449 Score: 67
Period size: 12 Copynumber: 3.2 Consensus size: 12
96403 AGAATAAATG
96413 AAAA-AAATAAA
1 AAAAGAAATAAA
96424 AAAAGAAATAAA
1 AAAAGAAATAAA
96436 AAAAGAAATAAA
1 AAAAGAAATAAA
96448 AA
1 AA
96450 GGAAAGGAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 4 0.16
12 21 0.84
ACGTcount: A:0.86, C:0.00, G:0.05, T:0.08
Consensus pattern (12 bp):
AAAAGAAATAAA
Found at i:96472 original size:24 final size:24
Alignment explanation
Indices: 96413--96486 Score: 71
Period size: 24 Copynumber: 3.1 Consensus size: 24
96403 AGAATAAATG
* *
96413 AAAAAAATAAAAAAAGAAA-TAAA
1 AAAAAAATAAAAAAGGAAAGGAAA
96436 AAAAGAAAT-AAAAAGGAAAGGAAA
1 AAAA-AAATAAAAAAGGAAAGGAAA
** * *
96460 GGAAAAATAAAAATGAAAAGGAAA
1 AAAAAAATAAAAAAGGAAAGGAAA
96484 AAA
1 AAA
96487 TGAAAAGGGA
Statistics
Matches: 40, Mismatches: 8, Indels: 5
0.75 0.15 0.09
Matches are distributed among these distances:
23 17 0.43
24 23 0.57
ACGTcount: A:0.78, C:0.00, G:0.15, T:0.07
Consensus pattern (24 bp):
AAAAAAATAAAAAAGGAAAGGAAA
Found at i:96487 original size:14 final size:14
Alignment explanation
Indices: 96468--96550 Score: 70
Period size: 14 Copynumber: 6.3 Consensus size: 14
96458 AAGGAAAAAT
96468 AAAAATGAAAAGGA
1 AAAAATGAAAAGGA
*
96482 AAAAATGAAAAGGG
1 AAAAATGAAAAGGA
*
96496 AAATA-GAAAATGG-
1 AAAAATGAAAA-GGA
*
96509 AAAAATG-GAA-GA
1 AAAAATGAAAAGGA
* *
96521 AAATATGAAAAAGA
1 AAAAATGAAAAGGA
96535 AAAAAT-AAAA-GA
1 AAAAATGAAAAGGA
96547 AAAA
1 AAAA
96551 TGATGAAAAA
Statistics
Matches: 57, Mismatches: 7, Indels: 12
0.75 0.09 0.16
Matches are distributed among these distances:
11 1 0.02
12 12 0.21
13 17 0.30
14 27 0.47
ACGTcount: A:0.71, C:0.00, G:0.19, T:0.10
Consensus pattern (14 bp):
AAAAATGAAAAGGA
Found at i:96530 original size:26 final size:27
Alignment explanation
Indices: 96468--96567 Score: 89
Period size: 27 Copynumber: 3.7 Consensus size: 27
96458 AAGGAAAAAT
* *
96468 AAAA-ATGAAAAGGAAAAAATGAAAAGG
1 AAAATATGAAAAAGAAAAAAT-AAAAGA
* * * **
96495 GAAATA-GAAAATGGAAAAATGGAAG-
1 AAAATATGAAAAAGAAAAAATAAAAGA
96520 AAAATATGAAAAAGAAAAAATAAAAGA
1 AAAATATGAAAAAGAAAAAATAAAAGA
96547 AAAATGATGAAAAAAGAAAAA
1 AAAAT-ATG-AAAAAGAAAAA
96568 GGAAATAAAA
Statistics
Matches: 58, Mismatches: 10, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
25 5 0.09
26 18 0.31
27 20 0.34
28 4 0.07
29 11 0.19
ACGTcount: A:0.71, C:0.00, G:0.19, T:0.10
Consensus pattern (27 bp):
AAAATATGAAAAAGAAAAAATAAAAGA
Found at i:97778 original size:65 final size:65
Alignment explanation
Indices: 97645--97804 Score: 193
Period size: 65 Copynumber: 2.5 Consensus size: 65
97635 TGCACTAAGA
*
97645 GTGCATCGATGCATAAAATGCATTCGATG-TTTCAAAATAGCCTGAGTGAATCGATGCATGGCTG
1 GTGCATCGATGCATAAAATGCATTCGATGTTTTCAAAATAGCCTGAGTGAATCGATGCATAGCTG
* * *
97709 GTGCATCGATGCATCAAATGCTTTCGATGTTTTCATAAA-A-CTCTGAGTGCATCGATGCATAG-
1 GTGCATCGATGCATAAAATGCATTCGATGTTTTCA-AAATAGC-CTGAGTGAATCGATGCATAGC
*
97771 TAT
64 T-G
* * *
97774 GTGCATCGGTGCATGAAATACATTCGATGTT
1 GTGCATCGATGCATAAAATGCATTCGATGTT
97805 CAATTTATTC
Statistics
Matches: 83, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
64 29 0.35
65 51 0.61
66 3 0.04
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.31
Consensus pattern (65 bp):
GTGCATCGATGCATAAAATGCATTCGATGTTTTCAAAATAGCCTGAGTGAATCGATGCATAGCTG
Found at i:98334 original size:2 final size:2
Alignment explanation
Indices: 98327--98356 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
98317 TTTTATTAAG
98327 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
98357 GCTTAAGCTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:100646 original size:23 final size:23
Alignment explanation
Indices: 100587--100638 Score: 104
Period size: 23 Copynumber: 2.3 Consensus size: 23
100577 GCATGGCCTT
100587 GTGCATCGATGCACATTTAAGGC
1 GTGCATCGATGCACATTTAAGGC
100610 GTGCATCGATGCACATTTAAGGC
1 GTGCATCGATGCACATTTAAGGC
100633 GTGCAT
1 GTGCAT
100639 TGGTGCACCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (23 bp):
GTGCATCGATGCACATTTAAGGC
Found at i:103282 original size:19 final size:19
Alignment explanation
Indices: 103258--103296 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
103248 CAGTTCCATG
103258 ACCACTCCTAACACTAGTT
1 ACCACTCCTAACACTAGTT
103277 ACCACTCCTAACACTAGTT
1 ACCACTCCTAACACTAGTT
103296 A
1 A
103297 TAGAGTAACC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.33, C:0.36, G:0.05, T:0.26
Consensus pattern (19 bp):
ACCACTCCTAACACTAGTT
Found at i:107558 original size:37 final size:37
Alignment explanation
Indices: 107508--107658 Score: 216
Period size: 37 Copynumber: 4.1 Consensus size: 37
107498 ACCTTCGAGA
*
107508 CAATTCAATCTTAAGCCTTCACGAAAGAGCAGTGAAG
1 CAATTCAATCTTAAGCCTTCACGAAAGAGTAGTGAAG
107545 CAATTCAATCTTAAGCCTTCACGAAAGAGTAGTGAAG
1 CAATTCAATCTTAAGCCTTCACGAAAGAGTAGTGAAG
* * *
107582 CAATTCAATCTTAATCCTTCACGGAAGAGTACTGAAG
1 CAATTCAATCTTAAGCCTTCACGAAAGAGTAGTGAAG
* *
107619 CAAATC-ATCTATAA-CTCTTCACGGAAGAGTAGTGAAG
1 CAATTCAATCT-TAAGC-CTTCACGAAAGAGTAGTGAAG
107656 CAA
1 CAA
107659 ACTCATTTTA
Statistics
Matches: 106, Mismatches: 6, Indels: 4
0.91 0.05 0.03
Matches are distributed among these distances:
36 5 0.05
37 101 0.95
ACGTcount: A:0.38, C:0.21, G:0.18, T:0.24
Consensus pattern (37 bp):
CAATTCAATCTTAAGCCTTCACGAAAGAGTAGTGAAG
Found at i:107864 original size:55 final size:55
Alignment explanation
Indices: 107675--108139 Score: 497
Period size: 55 Copynumber: 8.7 Consensus size: 55
107665 TTTATGAAGA
*
107675 TCGAGTCCTATACTCTCTGAAGGAATAGGGAGCCGACACGTTTGTTGAAGA----
1 TCGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACACGTTTGTTGAAGATTGT
* * *
107726 TCGAGTCTTATACTCTCTGAAAGAATAGGGAGCGGACACGTTTATTGAAGA----
1 TCGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACACGTTTGTTGAAGATTGT
* * * * * *
107777 CCGAGTCTTATACTCTCTGAAGGAATAAGGAGCAGACACATTTTTTGAAGATTGT
1 TCGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACACGTTTGTTGAAGATTGT
* * * *
107832 TCAAGTCCTATACTCTCTGAAGAAATAGGGAGCAGATACGTTTGTTGAAGA----
1 TCGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACACGTTTGTTGAAGATTGT
* * * * * *
107883 TCGAGTCTTATACTCTCTAAAGGAATAGGGAACGAACACATTTTTTGAAGATTGT
1 TCGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACACGTTTGTTGAAGATTGT
* * * * *
107938 TCAAGTCCTATACTCTTTGAAGAAATAGGGAGCGGACACGTTTGTTGAATATGGT
1 TCGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACACGTTTGTTGAAGATTGT
* * * *
107993 TCAAGTCCTATACTCTCTGGAA-AAATAAGGAGCGGATACGTTTGTTGAAGATTGT
1 TCGAGTCCTATACTCTCT-GAAGGAATAGGGAGCGGACACGTTTGTTGAAGATTGT
* * * * **
108048 TCGAGTCATATACTCTCTGAAGGAATAGGGTGCGAACATGTTTGTTGAAGATTAC
1 TCGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACACGTTTGTTGAAGATTGT
* *
108103 TCGAGTCTTATACTCCCTGAAGGAATAGGGAGCGGAC
1 TCGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGAC
108140 CCATCATTCG
Statistics
Matches: 346, Mismatches: 58, Indels: 16
0.82 0.14 0.04
Matches are distributed among these distances:
51 133 0.38
54 3 0.01
55 207 0.60
56 3 0.01
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (55 bp):
TCGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACACGTTTGTTGAAGATTGT
Found at i:107888 original size:106 final size:105
Alignment explanation
Indices: 107669--108136 Score: 516
Period size: 106 Copynumber: 4.4 Consensus size: 105
107659 ACTCATTTTA
* * *
107669 TGAAGATCGAGTCCTATACTCTCTGAAGGAATAGGGAGCCGACACGTTTGTTGAAGA----TCGA
1 TGAAGATCGAGTCTTATACTCTCTGAAGGAATAGGGAG-CGACACATTTGTTGAAGATTGTTCAA
* *
107730 GTCTTATACTCTCTGAA-AGAATAGGGAGCGGACACGTTTAT
65 GTCCTATACTCTCTGAAGA-AATAGGGAGCGGACACGTTTGT
* * *
107771 TGAAGACCGAGTCTTATACTCTCTGAAGGAATAAGGAGCAGACACATTTTTTGAAGATTGTTCAA
1 TGAAGATCGAGTCTTATACTCTCTGAAGGAATAGGGAGC-GACACATTTGTTGAAGATTGTTCAA
* *
107836 GTCCTATACTCTCTGAAGAAATAGGGAGCAGATACGTTTGT
65 GTCCTATACTCTCTGAAGAAATAGGGAGCGGACACGTTTGT
* * *
107877 TGAAGATCGAGTCTTATACTCTCTAAAGGAATAGGGAACGAACACATTTTTTGAAGATTGTTCAA
1 TGAAGATCGAGTCTTATACTCTCTGAAGGAATAGGGAGCG-ACACATTTGTTGAAGATTGTTCAA
*
107942 GTCCTATACTCTTTGAAGAAATAGGGAGCGGACACGTTTGT
65 GTCCTATACTCTCTGAAGAAATAGGGAGCGGACACGTTTGT
* * * * * * *
107983 TGAATATGGTTCAAGTCCTATACTCTCTGGAA-AAATAAGGAGCGGATACGTTTGTTGAAGATTG
1 TG-A-A--GATCGAGTCTTATACTCTCT-GAAGGAATAGGGAGC-GACACATTTGTTGAAGATTG
* * * * * *
108047 TTCGAGTCATATACTCTCTGAAGGAATAGGGTGCGAACATGTTTGT
60 TTCAAGTCCTATACTCTCTGAAGAAATAGGGAGCGGACACGTTTGT
*
108093 TGAAGATTACTCGAGTCTTATACTCCCTGAAGGAATAGGGAGCG
1 TGAAG---A-TCGAGTCTTATACTCTCTGAAGGAATAGGGAGCG
108137 GACCCATCAT
Statistics
Matches: 308, Mismatches: 40, Indels: 29
0.82 0.11 0.08
Matches are distributed among these distances:
101 1 0.00
102 50 0.16
105 1 0.00
106 138 0.45
107 2 0.01
108 2 0.01
109 5 0.02
110 106 0.34
111 3 0.01
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.29
Consensus pattern (105 bp):
TGAAGATCGAGTCTTATACTCTCTGAAGGAATAGGGAGCGACACATTTGTTGAAGATTGTTCAAG
TCCTATACTCTCTGAAGAAATAGGGAGCGGACACGTTTGT
Found at i:118719 original size:15 final size:15
Alignment explanation
Indices: 118699--118730 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
118689 AAATTTGTCA
118699 TTCTTTCGTGACGAG
1 TTCTTTCGTGACGAG
*
118714 TTCTTTTGTGACGAG
1 TTCTTTCGTGACGAG
118729 TT
1 TT
118731 TTATGAGATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.12, C:0.16, G:0.25, T:0.47
Consensus pattern (15 bp):
TTCTTTCGTGACGAG
Found at i:119242 original size:3 final size:3
Alignment explanation
Indices: 119234--119259 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
119224 CAGATTGATA
119234 TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TA
119260 GAGAAAATCG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:119366 original size:19 final size:19
Alignment explanation
Indices: 119342--119392 Score: 77
Period size: 19 Copynumber: 2.6 Consensus size: 19
119332 AATGACCAAT
119342 AAAATCGCAACGCGATATC-
1 AAAATCGCAACGCGAT-TCA
119361 AAAATCGCAACGCGATTCA
1 AAAATCGCAACGCGATTCA
119380 GAAAATCGCAACG
1 -AAAATCGCAACG
119393 TTAAAAAGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
18 2 0.07
19 16 0.53
20 12 0.40
ACGTcount: A:0.43, C:0.25, G:0.18, T:0.14
Consensus pattern (19 bp):
AAAATCGCAACGCGATTCA
Found at i:119386 original size:20 final size:20
Alignment explanation
Indices: 119342--119619 Score: 118
Period size: 20 Copynumber: 13.6 Consensus size: 20
119332 AATGACCAAT
119342 AAAATCGCAACGCGATATC--
1 AAAATCGCAACGCGAT-TCAG
119361 AAAATCGCAACGCGATTCAG
1 AAAATCGCAACGCGATTCAG
** ***
119381 AAAATCGCAACGTTAAAAAG
1 AAAATCGCAACGCGATTCAG
119401 AAAATCGCAACG-G--TCAAAAG
1 AAAATCGCAACGCGATTC---AG
*
119421 AAAATCGCAACGCGAGCTTC-C
1 AAAATCGCAACGCGA--TTCAG
** *
119442 AAGTTCGCAACGCGATTTAGAAG
1 AAAATCGCAACGCGA-TT--CAG
* *
119465 AAAATCGCAACGCGATTGAT
1 AAAATCGCAACGCGATTCAG
* * *
119485 AGAATCGCAATGCGATTGAG
1 AAAATCGCAACGCGATTCAG
* * * *
119505 AGAATCGCAATGCGATTTAT
1 AAAATCGCAACGCGATTCAG
* * *
119525 ATAATCGCAATGCGATTGAG
1 AAAATCGCAACGCGATTCAG
* * *
119545 AGAGTCGCAACGCGATTTAGAAG
1 AAAATCGCAACGCGA-TT--CAG
* * *
119568 AAAATCGCAATGCGACTGAG
1 AAAATCGCAACGCGATTCAG
* * * *
119588 AGAATCGCAATGCGATTTAT
1 AAAATCGCAACGCGATTCAG
*
119608 AGAATCGCAACG
1 AAAATCGCAACG
119620 TTGAAAATAA
Statistics
Matches: 203, Mismatches: 40, Indels: 31
0.74 0.15 0.11
Matches are distributed among these distances:
18 2 0.01
19 16 0.08
20 137 0.67
21 16 0.08
22 3 0.01
23 27 0.13
25 2 0.01
ACGTcount: A:0.39, C:0.20, G:0.22, T:0.19
Consensus pattern (20 bp):
AAAATCGCAACGCGATTCAG
Found at i:119531 original size:40 final size:40
Alignment explanation
Indices: 119467--119617 Score: 212
Period size: 40 Copynumber: 3.7 Consensus size: 40
119457 TTTAGAAGAA
*
119467 AATCGCAACGCGATTGATAGAATCGCAATGCGATTGAGAG
1 AATCGCAACGCGATTTATAGAATCGCAATGCGATTGAGAG
* *
119507 AATCGCAATGCGATTTATATAATCGCAATGCGATTGAGAG
1 AATCGCAACGCGATTTATAGAATCGCAATGCGATTGAGAG
* * *
119547 AGTCGCAACGCGATTTAGAAGAAAATCGCAATGCGACTGAGAG
1 AATCGCAACGCGATTTA-TAG--AATCGCAATGCGATTGAGAG
*
119590 AATCGCAATGCGATTTATAGAATCGCAA
1 AATCGCAACGCGATTTATAGAATCGCAA
119618 CGTTGAAAAT
Statistics
Matches: 97, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
40 60 0.62
41 1 0.01
42 2 0.02
43 34 0.35
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (40 bp):
AATCGCAACGCGATTTATAGAATCGCAATGCGATTGAGAG
Found at i:119634 original size:103 final size:103
Alignment explanation
Indices: 119446--119637 Score: 278
Period size: 103 Copynumber: 1.9 Consensus size: 103
119436 GCTTCCAAGT
* *
119446 TCGCAACGCGATTTAGAAGAAAATCGCAACGCGATTGATAGAATCGCAATGCGATTGAGAGAATC
1 TCGCAACGCGATTTAGAAGAAAATCGCAACGCGACTGAGAGAATCGCAATGCGATTGAGAGAATC
* ** *
119511 GCAATGCGATTTATATAATCGCAATGCGATTGAGAGAG
66 GCAACGCGATAAATAAAATCGCAATGCGATTGAGAGAG
* * *
119549 TCGCAACGCGATTTAGAAGAAAATCGCAATGCGACTGAGAGAATCGCAATGCGATTTATAGAATC
1 TCGCAACGCGATTTAGAAGAAAATCGCAACGCGACTGAGAGAATCGCAATGCGATTGAGAGAATC
*
119614 GCAACGTTGA-AAATAAAATCGCAA
66 GCAACG-CGATAAATAAAATCGCAA
119638 CGGTCAAAAG
Statistics
Matches: 78, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
103 76 0.97
104 2 0.03
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.21
Consensus pattern (103 bp):
TCGCAACGCGATTTAGAAGAAAATCGCAACGCGACTGAGAGAATCGCAATGCGATTGAGAGAATC
GCAACGCGATAAATAAAATCGCAATGCGATTGAGAGAG
Found at i:119639 original size:83 final size:79
Alignment explanation
Indices: 119463--119617 Score: 222
Period size: 83 Copynumber: 1.9 Consensus size: 79
119453 GCGATTTAGA
* *
119463 AGAAAATCGCAACGCGATTGATAGAATCGCAATGCGATTGAGAGAATCGCAATGCGATTTATATA
1 AGAAAATCGCAACGCGATTGATAGAATCGCAATGCGACTGAGAGAATCGCAATGCGATTTATAGA
119528 ATCGCAATGCGATTG
66 ATCGCAA-GCGATTG
* *
119543 AGAGAGTCGCAACGCGATTTAGA-AGAAAATCGCAATGCGACTGAGAGAATCGCAATGCGATTTA
1 AGAAAATCGCAACGCGA-TT-GATAG--AATCGCAATGCGACTGAGAGAATCGCAATGCGATTTA
119607 TAGAATCGCAA
62 TAGAATCGCAA
119618 CGTTGAAAAT
Statistics
Matches: 67, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
80 15 0.22
81 4 0.06
82 2 0.03
83 46 0.69
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.21
Consensus pattern (79 bp):
AGAAAATCGCAACGCGATTGATAGAATCGCAATGCGACTGAGAGAATCGCAATGCGATTTATAGA
ATCGCAAGCGATTG
Found at i:119737 original size:6 final size:6
Alignment explanation
Indices: 119727--119824 Score: 135
Period size: 6 Copynumber: 16.5 Consensus size: 6
119717 GACACGTATT
* * * *
119727 ACCACT ACCACT ACCACT ACCACT ACCACG ACCACG ACCACG ACCACG
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
* *
119775 ACCACG ACCACG ACCACG ACCACG ACCCCG ACCCCG ACCACG ACC-CG
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
119822 ACC
1 ACC
119825 CGAGACGAGA
Statistics
Matches: 89, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
5 5 0.06
6 84 0.94
ACGTcount: A:0.31, C:0.53, G:0.12, T:0.04
Consensus pattern (6 bp):
ACCACG
Found at i:120527 original size:6 final size:6
Alignment explanation
Indices: 120511--120584 Score: 141
Period size: 6 Copynumber: 12.5 Consensus size: 6
120501 TCTCGTCTCG
120511 GGTCG- GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT
1 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT
120558 GGTCGT GGTCGT GGTCGT GGTCGT GGT
1 GGTCGT GGTCGT GGTCGT GGTCGT GGT
120585 AATACGTGTC
Statistics
Matches: 68, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
5 5 0.07
6 63 0.93
ACGTcount: A:0.00, C:0.16, G:0.51, T:0.32
Consensus pattern (6 bp):
GGTCGT
Found at i:120687 original size:20 final size:20
Alignment explanation
Indices: 120662--120701 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
120652 TTTTTAACTA
*
120662 TTCTTTTGACCGTTGCGATT
1 TTCTTTTGAACGTTGCGATT
*
120682 TTCTTTTTAACGTTGCGATT
1 TTCTTTTGAACGTTGCGATT
120702 CTCTCAATCG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.12, C:0.17, G:0.17, T:0.53
Consensus pattern (20 bp):
TTCTTTTGAACGTTGCGATT
Found at i:120715 original size:20 final size:20
Alignment explanation
Indices: 120692--120885 Score: 226
Period size: 20 Copynumber: 9.4 Consensus size: 20
120682 TTCTTTTTAA
120692 CGTTGCGATTCTCTCAATCG
1 CGTTGCGATTCTCTCAATCG
120712 CGTTGCGATTCTCTCAATCG
1 CGTTGCGATTCTCTCAATCG
* * *
120732 CATTGCGATTCTATAAATCG
1 CGTTGCGATTCTCTCAATCG
* *
120752 CATTGCGATTCTCTCAGTCG
1 CGTTGCGATTCTCTCAATCG
* *
120772 CATTGCGATTTTCTTCTAAATCG
1 CGTTGCGA--TTC-TCTCAATCG
* *
120795 TGTTGCGACTCTCTCAATCG
1 CGTTGCGATTCTCTCAATCG
*
120815 CATTGCGATTCTCTCAATCG
1 CGTTGCGATTCTCTCAATCG
*
120835 CGTTGCGATTCTATCAATCG
1 CGTTGCGATTCTCTCAATCG
*
120855 CGTTGCGATTTTCTTCTAAATCG
1 CGTTGCGA--TTC-TCTCAATCG
120878 CGTTGCGA
1 CGTTGCGA
120886 ACTTGGAAGC
Statistics
Matches: 149, Mismatches: 19, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
20 113 0.76
21 2 0.01
22 6 0.04
23 28 0.19
ACGTcount: A:0.19, C:0.26, G:0.19, T:0.37
Consensus pattern (20 bp):
CGTTGCGATTCTCTCAATCG
Found at i:120738 original size:40 final size:40
Alignment explanation
Indices: 120694--120885 Score: 249
Period size: 40 Copynumber: 4.7 Consensus size: 40
120684 CTTTTTAACG
*
120694 TTGCGATTCTCTCAATCGCGTTGCGATTCTCTCAATCGCA
1 TTGCGATTCTCTAAATCGCGTTGCGATTCTCTCAATCGCA
* * *
120734 TTGCGATTCTATAAATCGCATTGCGATTCTCTCAGTCGCA
1 TTGCGATTCTCTAAATCGCGTTGCGATTCTCTCAATCGCA
* *
120774 TTGCGATTTTCTTCTAAATCGTGTTGCGACTCTCTCAATCGCA
1 TTGCGA--TTC-TCTAAATCGCGTTGCGATTCTCTCAATCGCA
* * *
120817 TTGCGATTCTCTCAATCGCGTTGCGATTCTATCAATCGCG
1 TTGCGATTCTCTAAATCGCGTTGCGATTCTCTCAATCGCA
120857 TTGCGATTTTCTTCTAAATCGCGTTGCGA
1 TTGCGA--TTC-TCTAAATCGCGTTGCGA
120886 ACTTGGAAGC
Statistics
Matches: 131, Mismatches: 15, Indels: 9
0.85 0.10 0.06
Matches are distributed among these distances:
40 74 0.56
41 3 0.02
42 6 0.05
43 48 0.37
ACGTcount: A:0.19, C:0.26, G:0.18, T:0.37
Consensus pattern (40 bp):
TTGCGATTCTCTAAATCGCGTTGCGATTCTCTCAATCGCA
Found at i:120808 original size:83 final size:83
Alignment explanation
Indices: 120707--120885 Score: 286
Period size: 83 Copynumber: 2.2 Consensus size: 83
120697 CGATTCTCTC
* * *
120707 AATCGCGTTGCGATTCTCTCAATCGCATTGCGATTCTATAAATCGCATTGCGATTCTCTCAGTCG
1 AATCGCGTTGCGACTCTCTCAATCGCATTGCGATTCTATAAATCGCATTGCGATTCTATCAATCG
120772 CATTGCGATTTTCTTCTA
66 CATTGCGATTTTCTTCTA
* * * *
120790 AATCGTGTTGCGACTCTCTCAATCGCATTGCGATTCTCTCAATCGCGTTGCGATTCTATCAATCG
1 AATCGCGTTGCGACTCTCTCAATCGCATTGCGATTCTATAAATCGCATTGCGATTCTATCAATCG
*
120855 CGTTGCGATTTTCTTCTA
66 CATTGCGATTTTCTTCTA
120873 AATCGCGTTGCGA
1 AATCGCGTTGCGA
120886 ACTTGGAAGC
Statistics
Matches: 87, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
83 87 1.00
ACGTcount: A:0.20, C:0.26, G:0.18, T:0.36
Consensus pattern (83 bp):
AATCGCGTTGCGACTCTCTCAATCGCATTGCGATTCTATAAATCGCATTGCGATTCTATCAATCG
CATTGCGATTTTCTTCTA
Found at i:120962 original size:20 final size:20
Alignment explanation
Indices: 120692--120989 Score: 170
Period size: 20 Copynumber: 14.6 Consensus size: 20
120682 TTCTTTTTAA
* *
120692 CGTTGCGATTCTCTCAATCG
1 CGTTGCGATTTTCTAAATCG
* *
120712 CGTTGCGATTCTCTCAATCG
1 CGTTGCGATTTTCTAAATCG
* * *
120732 CATTGCGATTCTATAAATCG
1 CGTTGCGATTTTCTAAATCG
* * * *
120752 CATTGCGATTCTCTCAGTCG
1 CGTTGCGATTTTCTAAATCG
*
120772 CATTGCGATTTTCTTCTAAATCG
1 CGTTGCGA--TT-TTCTAAATCG
* * * *
120795 TGTTGCGACTCTCTCAATCG
1 CGTTGCGATTTTCTAAATCG
* * *
120815 CATTGCGATTCTCTCAATCG
1 CGTTGCGATTTTCTAAATCG
* * *
120835 CGTTGCGATTCTATCAATCG
1 CGTTGCGATTTTCTAAATCG
120855 CGTTGCGATTTTCTTCTAAATCG
1 CGTTGCGA--TT-TTCTAAATCG
** ** *
120878 CGTTGCGAACTTGGAAGCTCG
1 CGTTGCGATTTTCTAA-ATCG
* *
120899 CGTTGCGATTTTCT--TTTG
1 CGTTGCGATTTTCTAAATCG
*** **
120917 ACCGTTGCGATTTTCTTTTTAA
1 --CGTTGCGATTTTCTAAATCG
120939 CGTTGCGATTTTCTAAATCG
1 CGTTGCGATTTTCTAAATCG
* *
120959 CGTTGCGATTTT-GATATCG
1 CGTTGCGATTTTCTAAATCG
120978 CGTTGCGATTTT
1 CGTTGCGATTTT
120990 ATTGGTCATT
Statistics
Matches: 225, Mismatches: 42, Indels: 23
0.78 0.14 0.08
Matches are distributed among these distances:
18 2 0.01
19 17 0.08
20 158 0.70
21 14 0.06
22 6 0.03
23 28 0.12
ACGTcount: A:0.17, C:0.23, G:0.20, T:0.39
Consensus pattern (20 bp):
CGTTGCGATTTTCTAAATCG
Found at i:120979 original size:19 final size:20
Alignment explanation
Indices: 120939--120989 Score: 77
Period size: 19 Copynumber: 2.6 Consensus size: 20
120929 TTCTTTTTAA
*
120939 CGTTGCGATTTTCTAAATCG
1 CGTTGCGATTTTCGAAATCG
*
120959 CGTTGCGATTTT-GATATCG
1 CGTTGCGATTTTCGAAATCG
120978 CGTTGCGATTTT
1 CGTTGCGATTTT
120990 ATTGGTCATT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 17 0.59
20 12 0.41
ACGTcount: A:0.16, C:0.18, G:0.24, T:0.43
Consensus pattern (20 bp):
CGTTGCGATTTTCGAAATCG
Found at i:122389 original size:28 final size:27
Alignment explanation
Indices: 122334--122388 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
122324 TTTTTTCAAA
122334 TCGAGTCGAGTTCAAAAAATTGATTTT
1 TCGAGTCGAGTTCAAAAAATTGATTTT
*
122361 TCGAGTCGAGTTTAAAAAATTGATTTT
1 TCGAGTCGAGTTCAAAAAATTGATTTT
122388 T
1 T
122389 TGAATAGAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.40
Consensus pattern (27 bp):
TCGAGTCGAGTTCAAAAAATTGATTTT
Found at i:122402 original size:28 final size:27
Alignment explanation
Indices: 122341--122396 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
122331 AAATCGAGTC
* * *
122341 GAGTTCAAAAAATTGATTTTTCGAGTC
1 GAGTTTAAAAAATTGATTTTTCGAATA
*
122368 GAGTTTAAAAAATTGATTTTTTGAATA
1 GAGTTTAAAAAATTGATTTTTCGAATA
122395 GA
1 GA
122397 ATTTTACTCA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.38, C:0.05, G:0.18, T:0.39
Consensus pattern (27 bp):
GAGTTTAAAAAATTGATTTTTCGAATA
Found at i:122959 original size:15 final size:15
Alignment explanation
Indices: 122941--122970 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
122931 AAATTATTAA
*
122941 ATATTAAATATATAT
1 ATATTAAATACATAT
122956 ATATTAAATACATAT
1 ATATTAAATACATAT
122971 TTTAAACTCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.43
Consensus pattern (15 bp):
ATATTAAATACATAT
Found at i:123549 original size:35 final size:35
Alignment explanation
Indices: 123473--123553 Score: 101
Period size: 35 Copynumber: 2.3 Consensus size: 35
123463 TGTTGTATTT
* * *
123473 TGTGTTCGGTTGGTTTAGCAGGACTGTAAGATTAC
1 TGTGTTTGGTTGATTTAGCAGGAATGTAAGATTAC
* *
123508 TATGTTTGGTTGATTTAGTAGGAATGTAAGATTA-
1 TGTGTTTGGTTGATTTAGCAGGAATGTAAGATTAC
123542 TCGTGTTTGGTT
1 T-GTGTTTGGTT
123554 AAAGGAATAA
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
34 1 0.03
35 38 0.97
ACGTcount: A:0.21, C:0.06, G:0.30, T:0.43
Consensus pattern (35 bp):
TGTGTTTGGTTGATTTAGCAGGAATGTAAGATTAC
Found at i:131847 original size:21 final size:20
Alignment explanation
Indices: 131821--131918 Score: 79
Period size: 21 Copynumber: 4.8 Consensus size: 20
131811 ATCAGTTTCC
131821 AAAATCGCAACGCGATTCTTA
1 AAAATCGCAACGCGATT-TTA
* **
131842 AAAATCGCAATGCGATAGTA
1 AAAATCGCAACGCGATTTTA
* ** *
131862 CAAATTCGCATTGCGATTTTCC
1 -AAAATCGCAACGCGATTTT-A
* * *
131884 AAAATCGCAACGCGAATATG
1 AAAATCGCAACGCGATTTTA
131904 AAAATCGCAACGCGA
1 AAAATCGCAACGCGA
131919 ACACATAAAT
Statistics
Matches: 61, Mismatches: 14, Indels: 5
0.76 0.17 0.06
Matches are distributed among these distances:
20 17 0.28
21 44 0.72
ACGTcount: A:0.39, C:0.22, G:0.17, T:0.21
Consensus pattern (20 bp):
AAAATCGCAACGCGATTTTA
Found at i:131947 original size:20 final size:20
Alignment explanation
Indices: 131885--132078 Score: 221
Period size: 20 Copynumber: 9.7 Consensus size: 20
131875 CGATTTTCCA
* ** *
131885 AAATCGCAACGCGAATATGA
1 AAATCGCAACGCGTATCCGT
* *
131905 AAATCGCAACGCG-AACACAT
1 AAATCGCAACGCGTATC-CGT
131925 AAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
131945 AAATCGCAACGTGTATCCGT
1 AAATCGCAACGCGTATCCGT
**
131965 AAATCGCAACGCGTATGGGT
1 AAATCGCAACGCGTATCCGT
*
131985 AAATCGCAATGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
132005 ATATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
* * *
132025 AAATCGCAACG-ATAATACAT
1 AAATCGCAACGCGT-ATCCGT
132045 AAAATCGCAACGCGTATCCGT
1 -AAATCGCAACGCGTATCCGT
132066 AAATCGCAACGCG
1 AAATCGCAACGCG
132079 ATATTTAAAG
Statistics
Matches: 146, Mismatches: 23, Indels: 10
0.82 0.13 0.06
Matches are distributed among these distances:
19 2 0.01
20 126 0.86
21 17 0.12
22 1 0.01
ACGTcount: A:0.36, C:0.26, G:0.20, T:0.19
Consensus pattern (20 bp):
AAATCGCAACGCGTATCCGT
Found at i:131969 original size:60 final size:60
Alignment explanation
Indices: 131885--132078 Score: 253
Period size: 60 Copynumber: 3.2 Consensus size: 60
131875 CGATTTTCCA
* ** * *
131885 AAATCGCAACGCGAATATGAAAATCGCAACGCGAACACATAAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGTAAATCGCAACGCGAATACATAAATCGCAACGCGTATCCGT
* * *** *
131945 AAATCGCAACGTGTATCCGTAAATCGCAACGCGTATGGGTAAATCGCAATGCGTATCCGT
1 AAATCGCAACGCGTATCCGTAAATCGCAACGCGAATACATAAATCGCAACGCGTATCCGT
* **
132005 ATATCGCAACGCGTATCCGTAAATCGCAACGATAATACATAAAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGTAAATCGCAACGCGAATACAT-AAATCGCAACGCGTATCCGT
132066 AAATCGCAACGCG
1 AAATCGCAACGCG
132079 ATATTTAAAG
Statistics
Matches: 112, Mismatches: 21, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
60 81 0.72
61 31 0.28
ACGTcount: A:0.36, C:0.26, G:0.20, T:0.19
Consensus pattern (60 bp):
AAATCGCAACGCGTATCCGTAAATCGCAACGCGAATACATAAATCGCAACGCGTATCCGT
Found at i:132500 original size:33 final size:33
Alignment explanation
Indices: 132461--132531 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
132451 TTCACTTAGA
*
132461 TTTCATTTCGCGTTACGATTCTGTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
* *
132494 TTTCATTTCGCGTTGCTATTCTCTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
132527 TTTCA
1 TTTCA
132532 AGTTAGTATT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.11, C:0.23, G:0.18, T:0.48
Consensus pattern (33 bp):
TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
Found at i:132668 original size:41 final size:41
Alignment explanation
Indices: 132610--132687 Score: 147
Period size: 41 Copynumber: 1.9 Consensus size: 41
132600 TTGCAGAAGA
*
132610 GTCGCAACGAGATAAATGAAAATCGCAACGAGAGAATGACT
1 GTCGCAACGAGAGAAATGAAAATCGCAACGAGAGAATGACT
132651 GTCGCAACGAGAGAAATGAAAATCGCAACGAGAGAAT
1 GTCGCAACGAGAGAAATGAAAATCGCAACGAGAGAAT
132688 CGCAACGCGA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.45, C:0.17, G:0.26, T:0.13
Consensus pattern (41 bp):
GTCGCAACGAGAGAAATGAAAATCGCAACGAGAGAATGACT
Found at i:132684 original size:21 final size:21
Alignment explanation
Indices: 132611--132686 Score: 109
Period size: 21 Copynumber: 3.7 Consensus size: 21
132601 TGCAGAAGAG
*
132611 TCGCAACGAGATAAATGAAAA
1 TCGCAACGAGAGAAATGAAAA
***
132632 TCGCAACGAGAG-AATGACTG
1 TCGCAACGAGAGAAATGAAAA
132652 TCGCAACGAGAGAAATGAAAA
1 TCGCAACGAGAGAAATGAAAA
132673 TCGCAACGAGAGAA
1 TCGCAACGAGAGAA
132687 TCGCAACGCG
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
20 17 0.36
21 30 0.64
ACGTcount: A:0.46, C:0.17, G:0.25, T:0.12
Consensus pattern (21 bp):
TCGCAACGAGAGAAATGAAAA
Found at i:132728 original size:19 final size:19
Alignment explanation
Indices: 132706--132833 Score: 87
Period size: 19 Copynumber: 7.1 Consensus size: 19
132696 GAAACCAAAA
*
132706 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
132725 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
*
132739 TCTCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
132758 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
*
132772 TCTCGTTGCGATTTTCATTT
1 TCGCGTTGCGATTTTCA-TT
* ***
132792 CTCTCGTTGCGACAGTCATT
1 -TCGCGTTGCGATTTTCATT
*
132812 CTCTCGTTGCGATTTTCATT
1 -TCGCGTTGCGATTTTCATT
132832 TC
1 TC
132834 AACCAAAAGA
Statistics
Matches: 87, Mismatches: 10, Indels: 24
0.72 0.08 0.20
Matches are distributed among these distances:
14 20 0.23
16 6 0.07
17 6 0.07
19 22 0.25
20 19 0.22
21 14 0.16
ACGTcount: A:0.11, C:0.25, G:0.19, T:0.45
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:132747 original size:14 final size:14
Alignment explanation
Indices: 132728--132784 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
132718 TTTCATTTCG
132728 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
132742 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
132761 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
132775 CGTTGCGATT
1 CGTTGCGATT
132785 TTCATTTCTC
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 20 0.56
16 3 0.08
17 3 0.08
19 10 0.28
ACGTcount: A:0.09, C:0.25, G:0.23, T:0.44
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:132753 original size:33 final size:33
Alignment explanation
Indices: 132711--132833 Score: 165
Period size: 33 Copynumber: 3.5 Consensus size: 33
132701 CAAAATCGCA
132711 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
132744 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
*
132777 TTGCGATTTTCATTTCTCTCGTTGCGACAGTCATTCTCTCG
1 TTGCGATTTTCA-TT-TCGCGTT--G-C-G--ATTCTCTCG
132818 TTGCGATTTTCATTTC
1 TTGCGATTTTCATTTC
132834 AACCAAAAGA
Statistics
Matches: 81, Mismatches: 1, Indels: 10
0.88 0.01 0.11
Matches are distributed among these distances:
33 45 0.56
34 2 0.02
35 6 0.07
37 1 0.01
38 1 0.01
39 3 0.04
40 2 0.02
41 21 0.26
ACGTcount: A:0.11, C:0.24, G:0.19, T:0.46
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
Found at i:132795 original size:21 final size:21
Alignment explanation
Indices: 132769--132833 Score: 96
Period size: 21 Copynumber: 3.1 Consensus size: 21
132759 CGCGTTGCGA
132769 TTCTCTCGTTGCGATTTTCAT
1 TTCTCTCGTTGCGATTTTCAT
***
132790 TTCTCTCGTTGCGACAGTCA-
1 TTCTCTCGTTGCGATTTTCAT
132810 TTCTCTCGTTGCGATTTTCAT
1 TTCTCTCGTTGCGATTTTCAT
132831 TTC
1 TTC
132834 AACCAAAAGA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
20 17 0.46
21 20 0.54
ACGTcount: A:0.11, C:0.26, G:0.15, T:0.48
Consensus pattern (21 bp):
TTCTCTCGTTGCGATTTTCAT
Found at i:134689 original size:93 final size:93
Alignment explanation
Indices: 134530--135091 Score: 1090
Period size: 93 Copynumber: 6.1 Consensus size: 93
134520 TAGATTGCTT
*
134530 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
134595 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
* *
134623 AGTAAATTTGTTCGGTTGCTGCTAATTCTGCTAAACTGTGTATTCTTTAACACTGAGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
134688 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
134716 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
134781 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
134809 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
134874 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
134902 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
134967 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
134995 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
135060 TTTGTCTTTGTTTTGTCTTTTGGTTG-A
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
135087 AGTAA
1 AGTAA
135092 TGCAATCCAT
Statistics
Matches: 464, Mismatches: 5, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
92 6 0.01
93 458 0.99
ACGTcount: A:0.22, C:0.13, G:0.19, T:0.46
Consensus pattern (93 bp):
AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
TTTGTCTTTGTTTTGTCTTTTGGTTGAA
Done.