genome.fa.s9277.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009277.1 Hibiscus syriacus cultivar Beakdansim tig00112960_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  120430

Tables:   1   

This is table  1  of  1  ( 82 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5435--5490	22	2.7	21	83	10	62	30	23	17	28	1.97
7017--7060	21	2.1	21	86	0	61	9	36	15	38	1.80
7826--7865	20	2.0	21	85	14	57	42	5	7	45	1.54
8096--8134	19	2.1	19	90	0	60	20	35	15	28	1.93
8033--8240	65	3.2	64	80	7	215	30	24	16	28	1.96
10956--11005	24	2.1	24	85	7	66	60	14	2	24	1.45
14866--14903	3	12.7	3	83	10	51	71	2	0	26	1.00
14865--14905	15	2.7	15	85	10	57	73	2	0	24	0.96
16165--16203	13	3.1	13	85	3	53	53	7	2	35	1.43
18543--18585	22	1.9	22	81	13	52	30	4	2	62	1.28
18502--18714	114	1.9	114	86	2	302	29	11	6	53	1.62
19685--19727	2	21.5	2	100	0	86	51	0	0	48	1.00
20046--20071	2	13.0	2	100	0	52	50	0	0	50	1.00
20115--20148	16	2.1	16	88	0	50	2	14	2	79	0.97
20329--20363	15	2.3	15	90	0	52	14	2	22	60	1.48
26548--26627	21	3.8	21	96	1	142	40	7	10	42	1.67
27917--27967	25	2.0	25	100	0	102	33	7	19	39	1.81
31169--31200	2	16.0	2	100	0	64	50	0	0	50	1.00
31608--31654	3	16.0	3	86	4	69	36	2	0	61	1.08
35652--35701	20	2.5	20	83	0	64	16	18	10	56	1.67
37658--37695	9	4.2	9	86	0	58	84	0	13	2	0.73
38160--38189	8	3.9	8	91	8	53	76	0	23	0	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41211--41291	42	1.9	43	92	2	137	22	20	22	34	1.97
41117--41811	249	2.8	248	92	2	1151	30	17	16	35	1.92
41706--41787	42	2.0	42	87	0	119	23	23	19	34	1.97
41963--42015	28	2.0	27	85	10	74	37	7	0	54	1.29
41976--42023	25	1.9	25	82	0	60	41	6	0	52	1.27
42698--42743	22	2.0	23	91	4	76	28	17	34	19	1.94
49533--49577	20	2.2	20	100	0	90	42	17	8	31	1.80
51645--51740	49	2.0	49	87	0	138	17	37	30	14	1.90
52729--52833	29	3.6	29	70	7	77	43	2	17	36	1.64
54318--54382	30	2.1	31	88	8	98	35	3	21	40	1.69
55124--55189	29	2.3	29	75	0	69	28	13	7	50	1.69
55912--55967	28	2.0	28	80	16	64	39	0	5	55	1.23
56626--56661	15	2.3	16	95	4	65	13	11	0	75	1.06
56737--56772	15	2.3	16	95	4	65	13	11	0	75	1.06
56626--56847	111	2.0	111	100	0	444	23	21	7	47	1.75
57297--57372	38	2.0	38	100	0	152	26	28	13	31	1.93
59602--59644	17	2.5	17	84	3	50	32	13	20	32	1.92
66442--66810	20	18.5	20	85	4	458	34	26	18	20	1.96
67484--67530	24	2.0	24	87	8	69	25	14	21	38	1.92
67705--67729	12	2.1	12	100	0	50	72	0	28	0	0.86
70027--70351	19	18.4	19	81	15	412	47	17	20	14	1.82
70027--70351	33	9.2	34	79	12	306	47	17	20	14	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70055--70373	52	6.0	52	93	3	557	47	16	21	14	1.83
70380--70481	19	5.6	19	85	12	151	14	23	17	44	1.86
70588--70624	14	2.6	14	91	0	65	45	21	0	32	1.52
70605--70677	38	1.9	38	97	0	137	53	16	1	28	1.51
70662--70712	26	2.0	26	88	0	75	58	17	3	19	1.54
70710--70762	13	4.2	13	80	9	56	58	18	0	22	1.39
72620--72676	14	3.7	14	77	20	60	45	22	21	10	1.82
72601--72693	33	2.8	33	95	0	168	47	21	20	10	1.80
72564--72698	19	7.6	19	76	16	128	45	23	19	11	1.82
72694--72841	20	7.4	20	84	3	163	20	20	25	33	1.97
72834--72910	21	3.7	20	70	13	57	27	16	23	32	1.96
72896--72947	20	2.6	20	96	0	95	21	13	26	38	1.90
73215--73270	23	2.4	24	84	6	78	62	17	8	10	1.52
73254--73287	10	3.4	10	87	0	50	58	14	11	14	1.63
73215--73299	33	2.6	32	83	7	107	62	17	8	11	1.53
73481--73519	14	2.8	14	80	0	51	53	17	12	15	1.72
78187--78217	14	2.2	14	100	0	62	9	22	19	48	1.78
81001--81690	249	2.8	248	91	2	1114	30	16	16	35	1.92
81590--81671	42	2.0	42	85	0	110	23	21	19	35	1.96
81859--81905	3	16.0	3	86	4	69	36	2	0	61	1.08
89433--89477	20	2.2	20	96	0	81	44	17	6	31	1.75
91479--91537	27	2.2	27	90	0	91	18	35	30	15	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92556--92600	23	2.0	22	82	4	54	35	2	22	40	1.66
94183--94247	30	2.1	31	88	8	98	35	3	21	40	1.69
96501--96533	16	2.1	16	94	5	59	12	12	0	75	1.04
97061--97136	38	2.0	38	100	0	152	26	28	13	31	1.93
99398--99434	15	2.5	15	100	0	74	16	16	29	37	1.90
104249--104277	2	14.5	2	100	0	58	51	0	0	48	1.00
106206--106261	23	2.4	24	81	3	69	62	19	8	8	1.51
106245--106278	10	3.4	10	87	0	50	58	14	11	14	1.63
106473--106511	14	2.8	14	80	0	51	53	17	12	15	1.72
107113--107150	14	2.9	13	85	11	51	31	28	13	26	1.93
107113--107146	14	2.5	14	90	4	52	32	26	14	26	1.95
114601--114634	11	3.2	10	88	12	50	47	0	0	52	1.00
114644--114707	29	2.2	30	82	2	85	46	4	0	48	1.23
114820--114876	23	2.5	23	78	13	64	45	3	0	50	1.18
115184--115211	2	14.0	2	100	0	56	50	0	0	50	1.00
118955--118999	22	2.0	22	100	0	90	22	20	31	26	1.98

Tables:   1

The End!