Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009278.1 Hibiscus syriacus cultivar Beakdansim tig00112961_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63324

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
182--236
28
2.0
28
92
0
92
16
10
21
50
1.75
185--244
28
2.1
28
84
6
77
20
8
21
50
1.74
583--615
17
1.9
17
93
0
57
33
6
3
57
1.38
3459--3540
40
2.1
40
95
2
148
40
13
12
34
1.82
6735--6767
17
2.0
17
88
5
50
51
0
9
39
1.34
7429--7462
17
1.9
18
88
5
52
67
2
5
23
1.26
8711--8770
3
20.0
3
80
13
70
63
0
3
33
1.11
8727--8777
15
3.5
15
89
10
72
70
0
3
25
1.04
8712--8779
21
3.1
21
76
15
57
67
0
2
29
1.05
18204--18250
15
2.9
15
77
22
51
42
0
0
57
0.98
18207--18249
12
3.5
13
81
9
54
44
0
0
55
0.99
26556--27236
20
34.1
20
84
3
802
22
22
22
32
1.98
27287--27494
95
2.2
95
88
0
317
33
16
18
30
1.94
27567--27872
95
3.2
95
87
1
416
39
12
25
22
1.89
27722--27875
45
3.3
45
69
15
141
38
11
27
22
1.88
28048--28094
15
2.9
15
77
22
51
42
0
0
57
0.98
28051--28093
12
3.5
13
81
9
54
44
0
0
55
0.99
29263--29317
28
2.0
28
82
7
67
38
0
3
58
1.16
31081--31350
127
2.1
127
90
1
425
44
14
17
23
1.86
32496--32546
15
3.4
15
73
10
50
58
1
15
23
1.47
32648--33113
139
3.3
138
84
0
581
25
15
27
31
1.95
33711--33740
2
15.0
2
100
0
60
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33949--34038
21
4.3
21
69
5
65
38
23
13
24
1.90
35835--35944
30
3.5
30
69
20
98
40
13
17
28
1.87
35816--35996
65
2.8
66
91
0
274
41
14
17
27
1.88
35837--35996
66
2.4
65
90
1
239
41
13
17
26
1.87
35941--36134
104
1.9
104
81
2
237
39
11
14
34
1.82
36217--36301
36
2.4
36
84
4
109
41
10
16
31
1.82
36217--36321
36
2.9
35
81
6
97
40
10
15
33
1.81
41375--41432
21
2.8
21
79
10
64
34
29
15
20
1.94
42282--42360
30
2.7
29
80
5
86
18
26
13
40
1.89
42317--42373
30
1.9
30
85
7
80
12
26
15
45
1.82
48421--48843
138
3.1
137
85
3
537
28
22
18
31
1.97
48450--48964
138
3.7
136
80
4
525
28
22
17
31
1.97
48446--48964
276
1.9
277
81
5
629
28
22
17
31
1.97
52200--52281
29
2.9
29
85
1
112
39
20
24
15
1.92
52200--52292
29
3.2
28
81
6
105
38
20
23
17
1.93
52357--52396
2
20.0
2
100
0
80
50
0
0
50
1.00
52894--52951
13
4.3
14
78
6
57
37
24
17
20
1.93
52948--52991
17
2.6
17
85
0
52
15
20
38
25
1.92
54128--54189
21
3.0
21
95
0
106
20
22
22
33
1.97
55101--55176
31
2.4
31
80
2
89
27
31
26
14
1.95
55053--55176
63
2.0
63
82
9
155
26
29
27
16
1.97
55970--56006
13
2.7
14
91
8
67
24
29
29
16
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55996--56053
17
3.4
17
92
0
89
18
24
39
17
1.92
55970--56006
7
5.4
7
93
6
67
24
29
29
16
1.96
56047--56116
19
3.7
19
94
3
115
24
31
27
17
1.97
56047--56115
9
7.3
9
79
9
75
24
31
27
15
1.96
62318--62437
62
2.0
61
82
12
149
25
30
26
17
1.97
63249--63295
17
2.8
17
96
0
85
14
23
44
17
1.85
63224--63276
24
2.1
26
86
6
74
18
28
35
16
1.93
63224--63259
7
5.4
7
93
6
58
22
30
30
16
1.96

Tables:   1

The End!