genome.fa.s9279.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009279.1 Hibiscus syriacus cultivar Beakdansim tig00112962_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57994

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1248--1426	64	2.8	66	88	3	256	41	14	17	26	1.88
1269--1423	65	2.4	64	88	3	213	41	14	18	25	1.88
1637--1721	36	2.4	36	84	4	109	41	10	16	31	1.82
1636--1743	36	3.0	34	75	16	94	40	10	14	34	1.80
6717--6774	21	2.8	21	79	10	64	34	29	15	20	1.94
7496--7711	30	7.2	30	72	10	120	17	28	12	42	1.85
13701--14123	138	3.1	137	85	3	537	28	22	18	31	1.97
13730--14244	138	3.7	136	80	4	525	28	22	17	31	1.97
13726--14244	276	1.9	277	81	5	629	28	22	17	31	1.97
17474--17555	29	2.9	29	85	1	112	39	20	24	15	1.92
17474--17566	29	3.2	28	81	6	105	38	20	23	17	1.93
17631--17669	2	19.5	2	100	0	78	51	0	0	48	1.00
18168--18225	13	4.3	14	78	6	57	37	24	17	20	1.93
18222--18265	17	2.6	17	85	0	52	15	20	38	25	1.92
19402--19463	21	3.0	21	95	0	106	20	22	22	33	1.97
20376--20451	31	2.4	31	80	2	89	27	31	26	14	1.95
20328--20451	63	2.0	63	82	9	155	26	29	27	16	1.97
21245--21281	13	2.7	14	91	8	67	24	29	29	16	1.96
21271--21328	17	3.4	17	92	0	89	18	24	39	17	1.92
21245--21281	7	5.4	7	93	6	67	24	29	29	16	1.96
21322--21391	19	3.7	19	94	3	115	24	31	27	17	1.97
21322--21390	9	7.3	9	79	9	75	24	31	27	15	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27645--27720	31	2.4	31	80	2	89	27	31	26	14	1.95
27597--27720	63	2.0	63	82	9	155	26	29	27	16	1.97
28514--28550	13	2.7	14	91	8	67	24	29	29	16	1.96
28540--28597	17	3.4	17	97	0	107	15	24	43	17	1.87
28514--28550	7	5.4	7	93	6	67	24	29	29	16	1.96
28591--28680	19	4.7	19	87	6	119	27	30	24	17	1.97
28607--28679	9	7.7	9	79	11	83	28	30	24	16	1.96
29536--29592	18	2.9	19	82	14	80	47	12	10	29	1.74
31543--31715	90	1.9	89	94	1	301	37	10	6	44	1.67
33534--33588	20	3.0	19	82	12	71	27	18	29	25	1.98
35019--35086	25	2.5	28	74	18	70	38	16	26	19	1.92
37900--38203	68	4.5	68	95	0	536	26	26	17	28	1.98
38186--38221	18	2.0	18	100	0	72	27	27	22	22	1.99
38118--38289	86	2.0	86	97	0	326	27	26	17	28	1.98
40079--40125	14	3.4	14	88	11	62	78	2	19	0	0.85
40084--40124	20	2.0	20	86	9	57	80	2	17	0	0.82
45140--45321	60	2.8	63	85	10	219	27	23	16	32	1.96
45532--45643	54	2.0	56	88	8	167	28	21	14	35	1.92
46046--46098	20	2.7	20	87	0	70	22	28	15	33	1.94
47605--47645	22	1.9	21	90	5	64	39	4	12	43	1.63
53037--53104	23	3.0	23	91	0	100	20	23	27	27	1.99
56393--56435	21	2.0	21	81	0	50	30	30	25	13	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56463--56507	22	2.0	22	86	4	63	31	33	26	8	1.87
56982--57034	2	27.5	2	92	7	92	50	0	0	49	1.00

Tables:   1

The End!