genome.fa.s928.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000928.1 Hibiscus syriacus cultivar Beakdansim tig00001852_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81577

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3926--4245	103	3.1	103	94	0	579	37	23	12	25	1.91
4792--4849	21	2.8	21	97	0	107	17	27	22	32	1.96
10853--10902	23	2.2	23	85	3	66	32	22	24	22	1.98
10931--11246	103	3.1	103	93	4	545	36	25	13	25	1.92
12721--12800	16	4.8	16	76	14	72	80	3	12	3	0.99
12712--12805	29	3.3	27	76	21	77	78	4	13	3	1.02
12741--12785	17	2.6	18	83	16	60	80	6	8	4	1.03
12705--12800	23	4.2	23	74	13	74	79	4	13	3	1.00
12705--12797	11	7.8	11	74	13	62	79	4	12	3	1.00
12711--12797	10	8.6	10	70	16	63	80	3	12	3	0.96
14333--14415	43	1.9	43	82	4	105	31	30	15	22	1.95
14810--14898	36	2.4	36	83	9	101	29	16	15	38	1.90
14834--15085	36	7.1	36	72	15	202	28	17	13	40	1.88
14929--15087	37	4.4	36	82	7	178	25	19	13	40	1.89
14929--15087	73	2.2	73	85	3	205	25	19	13	40	1.89
15035--15188	67	2.3	69	81	9	183	29	21	12	36	1.90
15139--15218	34	2.4	32	85	8	99	38	17	10	33	1.83
17097--17130	6	5.7	6	86	13	52	50	0	0	50	1.00
17097--17130	13	2.8	13	91	8	54	50	0	0	50	1.00
23705--23758	23	2.3	23	80	0	72	31	25	25	16	1.97
25316--25353	20	1.9	20	88	0	58	23	23	18	34	1.96
25364--25522	64	2.5	62	80	10	178	24	25	18	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28498--28579	23	3.6	23	96	0	155	29	28	26	15	1.96
30055--30092	20	1.9	20	94	0	67	26	23	18	31	1.97
32791--32911	60	2.0	61	84	7	158	38	10	0	49	1.43
36951--36989	12	3.2	12	85	3	51	53	0	0	46	1.00
39988--40028	8	5.2	8	82	5	57	34	0	29	36	1.58
39990--40041	23	2.2	23	86	3	68	34	0	26	38	1.57
40099--40979	128	6.9	128	94	1	1547	23	24	19	32	1.97
40099--40979	381	2.3	383	94	1	1545	23	24	19	32	1.97
41378--41475	33	3.0	33	80	8	119	38	3	4	54	1.35
42150--42237	32	2.7	32	80	7	97	59	2	0	38	1.10
42150--42228	33	2.4	34	83	8	101	60	1	0	37	1.05
45194--45365	78	2.2	78	90	1	265	27	20	17	34	1.95
48646--48689	20	2.2	20	83	0	52	40	4	11	43	1.61
49237--49302	34	1.9	34	100	0	132	51	6	19	22	1.69
52068--52127	3	20.3	3	86	3	68	58	0	8	33	1.28
53277--53336	30	2.0	30	96	0	111	10	18	20	51	1.74
53737--53769	11	3.0	11	91	8	50	63	3	15	18	1.43
56502--56689	36	5.2	36	91	0	277	19	22	23	34	1.96
58190--58226	19	1.9	19	94	0	65	32	16	18	32	1.93
59689--59713	2	12.5	2	100	0	50	52	0	0	48	1.00
61184--61214	14	2.2	14	100	0	62	45	0	12	41	1.42
70136--70192	24	2.4	24	96	0	105	43	10	26	19	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74898--75039	36	4.0	36	91	0	223	33	20	26	20	1.97
77087--77129	17	2.5	17	100	0	86	11	23	23	41	1.87

Tables:   1

The End!