Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009280.1 Hibiscus syriacus cultivar Beakdansim tig00112965_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 224400
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Found at i:280 original size:80 final size:81
Alignment explanation
Indices: 41--330 Score: 399
Period size: 80 Copynumber: 3.5 Consensus size: 81
31 TGAGGCCTAC
* * *
41 TGTGCAATTGGTAGAAAGATACCAATTATGCCAATTACATGAACGGTTTAATACCGTTGAGTAAA
1 TGTGCAATTGGTAGAAAGGTACCAATTATGCCAGTTAGATGAACGGTTTAATACCGTTGAGTAAA
106 GGAATAATGGCCTGGCCTAAT
66 GGAATAA-----TGGCCTAAT
* * *
127 TGTGCAA-TGGTAAAAAGGTCATC-ATTATGCCATTTAGATGAACGGTTTAATACCGTTGAGTAA
1 TGTGCAATTGGTAGAAAGGT-ACCAATTATGCCAGTTAGATGAACGGTTTAATACCGTTGAGTAA
190 AGGAATAATGGCCTAAT
65 AGGAATAATGGCCTAAT
* *
207 TGTGCAATTAGTAGAAAGGTACCAATTATGCCAGTTAGAT-AAAGAGTTTAATACCGTTGAGT-A
1 TGTGCAATTGGTAGAAAGGTACCAATTATGCCAGTTAGATGAACG-GTTTAATACCGTTGAGTAA
270 AGGAATAATGGCCTAAT
65 AGGAATAATGGCCTAAT
* *
287 TGTGCAATTGGTAGAAAAGTACCAATTATGACAGTTAGATGAAC
1 TGTGCAATTGGTAGAAAGGTACCAATTATGCCAGTTAGATGAAC
331 AGTTAAAAAT
Statistics
Matches: 185, Mismatches: 14, Indels: 15
0.86 0.07 0.07
Matches are distributed among these distances:
80 76 0.41
81 44 0.24
85 56 0.30
86 9 0.05
ACGTcount: A:0.36, C:0.13, G:0.22, T:0.29
Consensus pattern (81 bp):
TGTGCAATTGGTAGAAAGGTACCAATTATGCCAGTTAGATGAACGGTTTAATACCGTTGAGTAAA
GGAATAATGGCCTAAT
Found at i:5837 original size:26 final size:26
Alignment explanation
Indices: 5786--5838 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
5776 CCTATTTTAT
* * **
5786 ATTAGTGGTGCATTTCGATGCGTGTC
1 ATTAGTCGTGCATTTCAATGAATGTC
5812 ATTAGTCGTGCATTTCAATGAATGTC
1 ATTAGTCGTGCATTTCAATGAATGTC
5838 A
1 A
5839 CTCATTGTAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.15, G:0.25, T:0.38
Consensus pattern (26 bp):
ATTAGTCGTGCATTTCAATGAATGTC
Found at i:9701 original size:22 final size:22
Alignment explanation
Indices: 9653--9704 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
9643 TCTTCTATTA
*
9653 GATGTTTTCATCTGCCTTTATG
1 GATGTTTTCATATGCCTTTATG
* *
9675 GATGTTTTCTTATG-CTTTTTG
1 GATGTTTTCATATGCCTTTATG
9696 GCATGTTTT
1 G-ATGTTTT
9705 TCGGTTCTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
21 7 0.27
22 19 0.73
ACGTcount: A:0.12, C:0.13, G:0.19, T:0.56
Consensus pattern (22 bp):
GATGTTTTCATATGCCTTTATG
Found at i:11012 original size:6 final size:7
Alignment explanation
Indices: 11002--11027 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
10992 TCAAAATTAA
11002 AAAAAAT
1 AAAAAAT
11009 AAAAAAT
1 AAAAAAT
11016 AAAAAAT
1 AAAAAAT
11023 AAAAA
1 AAAAA
11028 CTTTGTTATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAAAT
Found at i:13980 original size:15 final size:15
Alignment explanation
Indices: 13960--13989 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
13950 TATCACAATC
13960 GCGCAGGATTCCGGG
1 GCGCAGGATTCCGGG
13975 GCGCAGGATTCCGGG
1 GCGCAGGATTCCGGG
13990 AGCACCGTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.27, G:0.47, T:0.13
Consensus pattern (15 bp):
GCGCAGGATTCCGGG
Found at i:26104 original size:3 final size:3
Alignment explanation
Indices: 26096--26168 Score: 139
Period size: 3 Copynumber: 24.7 Consensus size: 3
26086 TCCTAATATG
26096 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
26143 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
26169 CCCCTATTTA
Statistics
Matches: 69, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
2 2 0.03
3 67 0.97
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:26503 original size:17 final size:17
Alignment explanation
Indices: 26477--26509 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
26467 GTTTTAAAAA
26477 AACGTCAAC-GTCGGTT
1 AACGTCAACGGTCGGTT
26493 AACGTTCAACGGTCGGT
1 AACG-TCAACGGTCGGT
26510 CAATGGTCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 5 0.33
18 6 0.40
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.24
Consensus pattern (17 bp):
AACGTCAACGGTCGGTT
Found at i:30925 original size:16 final size:17
Alignment explanation
Indices: 30906--30940 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
30896 TTTTATGTTG
30906 TTTTTACTATTT-TTAT
1 TTTTTACTATTTGTTAT
*
30922 TTTTTATTATTTGTTAT
1 TTTTTACTATTTGTTAT
30939 TT
1 TT
30941 AAATTATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 11 0.65
17 6 0.35
ACGTcount: A:0.17, C:0.03, G:0.03, T:0.77
Consensus pattern (17 bp):
TTTTTACTATTTGTTAT
Found at i:30949 original size:32 final size:32
Alignment explanation
Indices: 30880--30950 Score: 81
Period size: 32 Copynumber: 2.2 Consensus size: 32
30870 TATACTTATG
* * **
30880 TTATTTTTATTTTTTGTTTTATGTTGTTTTTA
1 TTATTTTTATTTTTTATTTTATGTTATTTAAA
*
30912 CTATTTTTATTTTTTATTATT-TGTTATTTAAA
1 TTATTTTTATTTTTTATT-TTATGTTATTTAAA
30944 TTATTTT
1 TTATTTT
30951 AATTAAGTTT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
32 30 0.94
33 2 0.06
ACGTcount: A:0.18, C:0.01, G:0.06, T:0.75
Consensus pattern (32 bp):
TTATTTTTATTTTTTATTTTATGTTATTTAAA
Found at i:34740 original size:27 final size:27
Alignment explanation
Indices: 34702--34757 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
34692 AAACACACAA
*
34702 AAAGAGATAAAA-AGAAATAAAGAAGAG
1 AAAGAGATAAAATAGAAA-AAAAAAGAG
34729 AAAGAAGA-AAAATAGAAAAAAAAAGAG
1 AAAG-AGATAAAATAGAAAAAAAAAGAG
34756 AA
1 AA
34758 GAAATGAAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
27 18 0.69
28 8 0.31
ACGTcount: A:0.75, C:0.00, G:0.20, T:0.05
Consensus pattern (27 bp):
AAAGAGATAAAATAGAAAAAAAAAGAG
Found at i:36758 original size:58 final size:56
Alignment explanation
Indices: 36666--36833 Score: 154
Period size: 57 Copynumber: 3.0 Consensus size: 56
36656 CCCAAACAAC
*
36666 ATGATATTTTCAAAAGAATTTTTAAAGAAACTAAGCCTGA-TTTTCAGGGGTTTCTTG
1 ATGATATTTTCAAAAGAATTTTAAAAGAAACTAAG--TGAGTTTTCAGGGGTTTCTTG
* * * *
36723 ATGATGATTTTC-AATGAACTTTTAAAAGAAGCTAAGTTAGTTTTTAGGGGTTTCTTG
1 ATGAT-ATTTTCAAAAGAA-TTTTAAAAGAAACTAAGTGAGTTTTCAGGGGTTTCTTG
* * *
36780 ATG---TTTTCAAAATGAGTTTT--CAGAAACTAAGT-ATGATTTCAGGGGTTTCTTG
1 ATGATATTTTCAAAA-GAATTTTAAAAGAAACTAAGTGA-GTTTTCAGGGGTTTCTTG
36832 AT
1 AT
36834 AATTATTTCC
Statistics
Matches: 94, Mismatches: 11, Indels: 17
0.77 0.09 0.14
Matches are distributed among these distances:
51 1 0.01
52 28 0.30
53 5 0.05
54 6 0.06
55 2 0.02
56 2 0.02
57 29 0.31
58 21 0.22
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (56 bp):
ATGATATTTTCAAAAGAATTTTAAAAGAAACTAAGTGAGTTTTCAGGGGTTTCTTG
Found at i:37060 original size:41 final size:42
Alignment explanation
Indices: 36948--37060 Score: 122
Period size: 42 Copynumber: 2.7 Consensus size: 42
36938 AGGGTTTCAT
* * *
36948 GATGAGTAAGTCCTTCGGGCCATCAATAAGTCTTTTGAACAT
1 GATGAGTAAATCCTTCGGGCCATCAATAAGTCTTTTCAACAA
* * * * *
36990 GATGATTAAATCCGTCGAGTCATCTATAAGTC-TTTCAAGCAA
1 GATGAGTAAATCCTTCGGGCCATCAATAAGTCTTTTCAA-CAA
*
37032 GATG-GTAAATCCTTCGGGCCATCCATAAG
1 GATGAGTAAATCCTTCGGGCCATCAATAAG
37061 ACATACGTGT
Statistics
Matches: 57, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
41 25 0.44
42 32 0.56
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.29
Consensus pattern (42 bp):
GATGAGTAAATCCTTCGGGCCATCAATAAGTCTTTTCAACAA
Found at i:37279 original size:39 final size:39
Alignment explanation
Indices: 37236--37311 Score: 116
Period size: 39 Copynumber: 1.9 Consensus size: 39
37226 GGGATCAACA
* *
37236 TCTCGCTTAAGATAGTTTTACTCGAAACAGAAGATTTTT
1 TCTCGCTTAAGATAGTTTCACTCGAAACAAAAGATTTTT
* *
37275 TCTCGCTTGAGATAGTTTCGCTCGAAACAAAAGATTT
1 TCTCGCTTAAGATAGTTTCACTCGAAACAAAAGATTT
37312 ATCTCACTTG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36
Consensus pattern (39 bp):
TCTCGCTTAAGATAGTTTCACTCGAAACAAAAGATTTTT
Found at i:37442 original size:59 final size:59
Alignment explanation
Indices: 37350--37487 Score: 161
Period size: 59 Copynumber: 2.3 Consensus size: 59
37340 CAAACAGCGT
* * * * * *
37350 CCCACTAGAGGTGTTAACATTTGCTTCACTCGATTCATGGCATTTTGAATCAGTGACGC
1 CCCACTAGAGGGGATAACATTTCCTTCACTCGATTCATGGCATTTCGAATAAGAGACGC
* **
37409 CCCACTAGAGGGGATAACTTTTCCTTTGCTCGATTCATGGCATTTCGAATAAGAGACGC
1 CCCACTAGAGGGGATAACATTTCCTTCACTCGATTCATGGCATTTCGAATAAGAGACGC
* *
37468 CTCACTTGA-GGGATCAACAT
1 CCCACTAGAGGGGAT-AACAT
37488 CTCACTTGAG
Statistics
Matches: 66, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
58 5 0.08
59 61 0.92
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.30
Consensus pattern (59 bp):
CCCACTAGAGGGGATAACATTTCCTTCACTCGATTCATGGCATTTCGAATAAGAGACGC
Found at i:37740 original size:38 final size:38
Alignment explanation
Indices: 37580--37792 Score: 232
Period size: 39 Copynumber: 5.5 Consensus size: 38
37570 AGGGATCAAC
* * * *
37580 ATCTTGCTTAAGATAGTTTCACTTGAAACATAATATTTTT
1 ATCTCGCTTGAGATAGTTTCACTCGAAACA-AAGA-TTTT
* *
37620 ATCTCGCTTGAGATAGTTTCATTCGAAACAAAAGCTTTT
1 ATCTCGCTTGAGATAGTTTCACTCGAAAC-AAAGATTTT
* * *
37659 ATCTCGCTTGATA-AGGTTTCAATCAAAACAAAAGATTTT
1 ATCTCGCTTGAGATA-GTTTCACTCGAAAC-AAAGATTTT
37698 ATCTCGCTTGAGATAGTTTCACTCGAAACAAAGATTTT
1 ATCTCGCTTGAGATAGTTTCACTCGAAACAAAGATTTT
* * *
37736 ATCTCCCTTGAGATAATTTCACTCGAAACAGA-ATATTT
1 ATCTCGCTTGAGATAGTTTCACTCGAAACAAAGAT-TTT
* *
37774 ATCTCACTTGAGATTGTTT
1 ATCTCGCTTGAGATAGTTT
37793 TTCTTAATAA
Statistics
Matches: 150, Mismatches: 19, Indels: 10
0.84 0.11 0.06
Matches are distributed among these distances:
37 2 0.01
38 58 0.39
39 61 0.41
40 28 0.19
41 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.13, T:0.38
Consensus pattern (38 bp):
ATCTCGCTTGAGATAGTTTCACTCGAAACAAAGATTTT
Found at i:37946 original size:59 final size:57
Alignment explanation
Indices: 37818--37947 Score: 127
Period size: 59 Copynumber: 2.2 Consensus size: 57
37808 GTCTCACTTA
* * * *
37818 AGGGATCAATATTTCTTTGCTCGATTCACAACACTTCGAATCAGTAACGCCCCACCAT
1 AGGGA-CAACATTTCTTTACTCGATTCACAACACTTCAAATCAGTAACGCCCCACCAG
* * * * *
37876 AGGGGATAACATTTCCTTTACTCGATTCATAACACTTCAAATTAGTGACGCCTCACTC-G
1 A-GGGACAACATTT-CTTTACTCGATTCACAACACTTCAAATCAGTAACGCCCCAC-CAG
37935 AGGGACCAACATT
1 AGGGA-CAACATT
37948 GCCAGTAGAG
Statistics
Matches: 58, Mismatches: 10, Indels: 7
0.77 0.13 0.09
Matches are distributed among these distances:
58 11 0.19
59 46 0.79
60 1 0.02
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (57 bp):
AGGGACAACATTTCTTTACTCGATTCACAACACTTCAAATCAGTAACGCCCCACCAG
Found at i:38924 original size:2 final size:2
Alignment explanation
Indices: 38917--38964 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
38907 CAAAACCTAA
38917 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
38959 AT AT AT
1 AT AT AT
38965 TGAACATCAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:39843 original size:23 final size:23
Alignment explanation
Indices: 39808--39851 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
39798 CTTGTACTTA
*
39808 TGTTATTTTTATTTTTTTTATGT
1 TGTTATTTTTATTTTTATTATGT
39831 TGTT-TTTTCTATTTTTATTAT
1 TGTTATTTT-TATTTTTATTAT
39852 TATTTGTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.14, C:0.02, G:0.07, T:0.77
Consensus pattern (23 bp):
TGTTATTTTTATTTTTATTATGT
Found at i:39978 original size:23 final size:23
Alignment explanation
Indices: 39950--40003 Score: 90
Period size: 23 Copynumber: 2.3 Consensus size: 23
39940 TAAAGTTTAG
39950 AAATTAGGATTTCACATTAGTTT
1 AAATTAGGATTTCACATTAGTTT
*
39973 AAATTAGGATTTCATATTAGTTT
1 AAATTAGGATTTCACATTAGTTT
*
39996 TAATTAGG
1 AAATTAGG
40004 GAGCAATTCG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.35, C:0.06, G:0.15, T:0.44
Consensus pattern (23 bp):
AAATTAGGATTTCACATTAGTTT
Found at i:43070 original size:39 final size:39
Alignment explanation
Indices: 43022--43185 Score: 161
Period size: 39 Copynumber: 4.2 Consensus size: 39
43012 ATGATATATG
* * *
43022 GTAAAGACTTACCTTGTGCACAAAG-CAAAGGAGCCTGCA
1 GTAAGGACTTACCCTGAGCACAAAGTC-AAGGAGCCTGCA
* * * *
43061 ATAAGGACTTACCTTGAGCACAAAGTCGAGGAGCCTGCT
1 GTAAGGACTTACCCTGAGCACAAAGTCAAGGAGCCTGCA
* * * * * *
43100 GTAACGACTTACCCTAAGAAGAAAGTCAAGGAGCC-ACG
1 GTAAGGACTTACCCTGAGCACAAAGTCAAGGAGCCTGCA
* * *
43138 GTAAGGACTTACCCTGAGCACAAAGCCAAGGAGCCTACG
1 GTAAGGACTTACCCTGAGCACAAAGTCAAGGAGCCTGCA
43177 GTAAGGACT
1 GTAAGGACT
43186 GACAAGTCAT
Statistics
Matches: 104, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
38 31 0.30
39 72 0.69
40 1 0.01
ACGTcount: A:0.35, C:0.24, G:0.25, T:0.16
Consensus pattern (39 bp):
GTAAGGACTTACCCTGAGCACAAAGTCAAGGAGCCTGCA
Found at i:44829 original size:21 final size:21
Alignment explanation
Indices: 44805--44844 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
44795 TACTGAGTTC
44805 GTATATAAAT-AATTTTTTTGA
1 GTATAT-AATGAATTTTTTTGA
44826 GTATATAATGAATTTTTTT
1 GTATATAATGAATTTTTTT
44845 ACATTGAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 3 0.17
21 15 0.83
ACGTcount: A:0.35, C:0.00, G:0.10, T:0.55
Consensus pattern (21 bp):
GTATATAATGAATTTTTTTGA
Found at i:50559 original size:16 final size:17
Alignment explanation
Indices: 50529--50560 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
50519 TTTTTAATAG
50529 TTTTATATTTAATAATT
1 TTTTATATTTAATAATT
50546 TTTTATATTT-ATAAT
1 TTTTATATTTAATAAT
50561 ATTCTAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (17 bp):
TTTTATATTTAATAATT
Found at i:50642 original size:29 final size:29
Alignment explanation
Indices: 50602--50666 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 29
50592 ACATATTAAA
50602 TAAAAAACAATT-AA-CCTTTTGAATTTCT
1 TAAAAAACAATTAAATCCTTTT-AATTTCT
* *
50630 TAAAAAATCAATTAAATTCTTTTAATTTTT
1 TAAAAAA-CAATTAAATCCTTTTAATTTCT
50660 TAAAAAA
1 TAAAAAA
50667 ATATCAATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
28 7 0.22
29 5 0.16
30 15 0.47
31 5 0.16
ACGTcount: A:0.48, C:0.09, G:0.02, T:0.42
Consensus pattern (29 bp):
TAAAAAACAATTAAATCCTTTTAATTTCT
Found at i:54636 original size:16 final size:16
Alignment explanation
Indices: 54585--54660 Score: 50
Period size: 16 Copynumber: 4.8 Consensus size: 16
54575 GTTTGTAGCA
* *
54585 TTTTTATATTTAATGT
1 TTTTTATATTTTATAT
* * *
54601 ATTTAATATCTTAATAAT
1 TTTTTATAT-TTTAT-AT
54619 TTTTTATATTTTATA-
1 TTTTTATATTTTATAT
*
54634 TTTTTA-CTTTTATAT
1 TTTTTATATTTTATAT
54649 ATTTTTAT-TTTT
1 -TTTTTATATTTT
54661 TTTTAAAATT
Statistics
Matches: 48, Mismatches: 7, Indels: 10
0.74 0.11 0.15
Matches are distributed among these distances:
14 7 0.15
15 6 0.12
16 18 0.38
17 9 0.19
18 8 0.17
ACGTcount: A:0.28, C:0.03, G:0.01, T:0.68
Consensus pattern (16 bp):
TTTTTATATTTTATAT
Found at i:54661 original size:23 final size:23
Alignment explanation
Indices: 54618--54660 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
54608 ATCTTAATAA
*
54618 TTTTTTATATTTTATATTTTTAC
1 TTTTATATATTTTATATTTTTAC
54641 TTTTATATATTTT-TATTTTT
1 TTTTATATATTTTATATTTTT
54661 TTTTAAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.77
Consensus pattern (23 bp):
TTTTATATATTTTATATTTTTAC
Found at i:55919 original size:21 final size:21
Alignment explanation
Indices: 55875--55928 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 21
55865 ATATAATATT
* *
55875 AAAAATAAAGTATTAAAATTA
1 AAAAATAAAATATTAAAATAA
**
55896 AAAAATAAAATATTATGATAA
1 AAAAATAAAATATTAAAATAA
55917 AAATAATTAAAA
1 AAA-AA-TAAAA
55929 ATCATGTCTA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 20 0.74
22 2 0.07
23 5 0.19
ACGTcount: A:0.69, C:0.00, G:0.04, T:0.28
Consensus pattern (21 bp):
AAAAATAAAATATTAAAATAA
Found at i:58500 original size:114 final size:114
Alignment explanation
Indices: 58324--58552 Score: 350
Period size: 114 Copynumber: 2.0 Consensus size: 114
58314 GCGATGAGCC
* * * *
58324 TGGGCCCAACAGTGGTGTTCATGTTAGTAAGAATCGTTATGGGGCTTTGGTCATTAATGAGGCGA
1 TGGGCCAAACAGTGGTGTTCAGGTAAGTAAGAATCGTTATGGGGCTTTGGTCATTAATGAGGCAA
*
58389 ATGAGCAGGCCGAACCCCGTGTAGGAGAAAACAAGAAGGAAACTGAGGT
66 ATGAGCAGGCCGAACCCCGTGTAGGAGAAAACAAGAAGAAAACTGAGGT
* *
58438 TGGGCCAAACCGTGGTGTTCAGGTAAGTAGGAATCGTTATGGGGCTTTGGTCATTAATGAGGCAA
1 TGGGCCAAACAGTGGTGTTCAGGTAAGTAAGAATCGTTATGGGGCTTTGGTCATTAATGAGGCAA
** * * *
58503 ATGAGCAGGTTGAACCCTGTGTAGGAGAAAACATGAAGAAAATTGAGGT
66 ATGAGCAGGCCGAACCCCGTGTAGGAGAAAACAAGAAGAAAACTGAGGT
58552 T
1 T
58553 CGTGAGGCTG
Statistics
Matches: 103, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
114 103 1.00
ACGTcount: A:0.30, C:0.14, G:0.32, T:0.24
Consensus pattern (114 bp):
TGGGCCAAACAGTGGTGTTCAGGTAAGTAAGAATCGTTATGGGGCTTTGGTCATTAATGAGGCAA
ATGAGCAGGCCGAACCCCGTGTAGGAGAAAACAAGAAGAAAACTGAGGT
Found at i:69522 original size:22 final size:22
Alignment explanation
Indices: 69488--69538 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
69478 ATATTCTTTA
69488 TCATTCTTTACATTCTT-TTATT
1 TCATT-TTTACATTCTTATTATT
*
69510 TCATTTTTGACATTTTTATTATT
1 TCATTTTT-ACATTCTTATTATT
*
69533 TTATTT
1 TCATTT
69539 ATTTCATACA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 3 0.12
22 12 0.48
23 10 0.40
ACGTcount: A:0.20, C:0.12, G:0.02, T:0.67
Consensus pattern (22 bp):
TCATTTTTACATTCTTATTATT
Found at i:71599 original size:20 final size:22
Alignment explanation
Indices: 71574--71613 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
71564 ATAAAATTCC
71574 AATTTT-CTCATTT-CAAGCCT
1 AATTTTGCTCATTTACAAGCCT
*
71594 AATTTTGTTCATTTACAAGC
1 AATTTTGCTCATTTACAAGC
71614 ATCTTATAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
21 6 0.35
22 5 0.29
ACGTcount: A:0.28, C:0.20, G:0.07, T:0.45
Consensus pattern (22 bp):
AATTTTGCTCATTTACAAGCCT
Found at i:73907 original size:44 final size:44
Alignment explanation
Indices: 73823--73911 Score: 115
Period size: 44 Copynumber: 2.0 Consensus size: 44
73813 AAGAACTTGT
*
73823 TCAACATTTTGTTCGACTCTATCACAGAAAGAGATAGATCAACA
1 TCAACATTTTGTTCGACTCCATCACAGAAAGAGATAGATCAACA
* * * * * *
73867 TCAACATTTTGTTTGATTCCATCATAGAATGAGGTGGATCAACA
1 TCAACATTTTGTTCGACTCCATCACAGAAAGAGATAGATCAACA
73911 T
1 T
73912 TGTCATCCTT
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
44 38 1.00
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31
Consensus pattern (44 bp):
TCAACATTTTGTTCGACTCCATCACAGAAAGAGATAGATCAACA
Found at i:74180 original size:128 final size:129
Alignment explanation
Indices: 73884--74362 Score: 726
Period size: 129 Copynumber: 3.7 Consensus size: 129
73874 TTTGTTTGAT
* *
73884 TCCATCATAGAATGAGGTGGATCAACATTGTCATCCTTGCTAGATTTCATCACAGAAGGAGGTGG
1 TCCATCACAGAAGGAGGTGGATCAACATTGTCATCCTTGCTAGATTTCATCACAGAAGGAGGTGG
* *
73949 ATCAGCATAATCAAAGGAATAATAAGTTCATAATGAGAAGAACTTGTTCGAACTTTTACTCAAA
66 ATCAGCATAATCAAAGGAAGAATAAGTTCATAATGAGAAGAACTTGTTCGACCTTTTACTCAAA
* * * *
74013 TCCATCACAAAAGGAGGTGGATCAACATTGTCATCCTTGTTAGATTTTATCACAGAAGAAGGTGG
1 TCCATCACAGAAGGAGGTGGATCAACATTGTCATCCTTGCTAGATTTCATCACAGAAGGAGGTGG
* *
74078 ATCAGCATGATCAAAGGAAGAAAAAGTTCATAATGAGAA-AACTTGTTCGACCTTTTACTCAAA
66 ATCAGCATAATCAAAGGAAGAATAAGTTCATAATGAGAAGAACTTGTTCGACCTTTTACTCAAA
* * * * *
74141 TCCATCACAGAATGAGGTGGATCAATATTGTCATCCTTGTTATATTTCATCACAGAAGGAGGAGG
1 TCCATCACAGAAGGAGGTGGATCAACATTGTCATCCTTGCTAGATTTCATCACAGAAGGAGGTGG
* * *
74206 ATCATCATAATCAAAGGAAGAATAAGTTCATAATGAGAAGTACTTGTTCGACCTTTTACTTAAA
66 ATCAGCATAATCAAAGGAAGAATAAGTTCATAATGAGAAGAACTTGTTCGACCTTTTACTCAAA
* * * *
74270 TCCATCACAGAAGGAGGTGGATAAACATTGTCATACTTGCTATATTTCATCACAAAAGGAGGTGG
1 TCCATCACAGAAGGAGGTGGATCAACATTGTCATCCTTGCTAGATTTCATCACAGAAGGAGGTGG
* * *
74335 ATCAACATAGTCAAAGGAAGAAGAAGTT
66 ATCAGCATAATCAAAGGAAGAATAAGTT
74363 TATGTAGTTC
Statistics
Matches: 317, Mismatches: 32, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
128 117 0.37
129 200 0.63
ACGTcount: A:0.37, C:0.16, G:0.20, T:0.27
Consensus pattern (129 bp):
TCCATCACAGAAGGAGGTGGATCAACATTGTCATCCTTGCTAGATTTCATCACAGAAGGAGGTGG
ATCAGCATAATCAAAGGAAGAATAAGTTCATAATGAGAAGAACTTGTTCGACCTTTTACTCAAA
Found at i:74351 original size:257 final size:257
Alignment explanation
Indices: 73884--74362 Score: 762
Period size: 257 Copynumber: 1.9 Consensus size: 257
73874 TTTGTTTGAT
* *
73884 TCCATCATAGAATGAGGTGGATCAACATTGTCATCCTTGCTAGATTTCATCACAGAAGGAGGTGG
1 TCCATCACAGAATGAGGTGGATCAACATTGTCATCCTTGCTAGATTTCATCACAGAAGGAGGAGG
*
73949 ATCAGCATAATCAAAGGAATAATAAGTTCATAATGAGAAGAACTTGTTCGAACTTTTACTCAAAT
66 ATCAGCATAATCAAAGGAAGAATAAGTTCATAATGAGAAGAACTTGTTCGAACTTTTACTCAAAT
* * * * *
74014 CCATCACAAAAGGAGGTGGATCAACATTGTCATCCTTGTTAGATTTTATCACAGAAGAAGGTGGA
131 CCATCACAAAAGGAGGTGGATAAACATTGTCATACTTGCTAGATTTCATCACAAAAGAAGGTGGA
*
74079 TCAGCATGATCAAAGGAAGAAAAAGTTCATAATGAGAAAACTTGTTCGACCTTTTACTCAAA
196 TCAACATGATCAAAGGAAGAAAAAGTTCATAATGAGAAAACTTGTTCGACCTTTTACTCAAA
* * *
74141 TCCATCACAGAATGAGGTGGATCAATATTGTCATCCTTGTTATATTTCATCACAGAAGGAGGAGG
1 TCCATCACAGAATGAGGTGGATCAACATTGTCATCCTTGCTAGATTTCATCACAGAAGGAGGAGG
* * * *
74206 ATCATCATAATCAAAGGAAGAATAAGTTCATAATGAGAAGTACTTGTTCGACCTTTTACTTAAAT
66 ATCAGCATAATCAAAGGAAGAATAAGTTCATAATGAGAAGAACTTGTTCGAACTTTTACTCAAAT
* * *
74271 CCATCACAGAAGGAGGTGGATAAACATTGTCATACTTGCTATATTTCATCACAAAAGGAGGTGGA
131 CCATCACAAAAGGAGGTGGATAAACATTGTCATACTTGCTAGATTTCATCACAAAAGAAGGTGGA
*
74336 TCAACAT-AGTCAAAGGAAGAAGAAGTT
196 TCAACATGA-TCAAAGGAAGAAAAAGTT
74363 TATGTAGTTC
Statistics
Matches: 201, Mismatches: 20, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
256 1 0.00
257 200 1.00
ACGTcount: A:0.37, C:0.16, G:0.20, T:0.27
Consensus pattern (257 bp):
TCCATCACAGAATGAGGTGGATCAACATTGTCATCCTTGCTAGATTTCATCACAGAAGGAGGAGG
ATCAGCATAATCAAAGGAAGAATAAGTTCATAATGAGAAGAACTTGTTCGAACTTTTACTCAAAT
CCATCACAAAAGGAGGTGGATAAACATTGTCATACTTGCTAGATTTCATCACAAAAGAAGGTGGA
TCAACATGATCAAAGGAAGAAAAAGTTCATAATGAGAAAACTTGTTCGACCTTTTACTCAAA
Found at i:74486 original size:164 final size:164
Alignment explanation
Indices: 74215--74526 Score: 464
Period size: 164 Copynumber: 1.9 Consensus size: 164
74205 GATCATCATA
* * * *
74215 ATCAAAGGAAGAATAAGTTCATAATGAGAAGTACTTGTTCGACCTTTTACTTAAATCCATCACAG
1 ATCAAAGGAAGAAAAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTACTCAAATCCATCACAG
* * *
74280 AAGGAGGTGGATAAACATTGTCATACTTGCTATATTTCATCACA-AAAGGAGGTGGATCAACATA
66 AAGGAGGTAGATAAACATTGTCATACTTGCTAGATTTCATCACAGAAA-GAGGCGGATCAACATA
*
74344 GTCAAAGGAAGAAGAAGTTTATGTAGTTCAACATT
130 ATCAAAGGAAGAAGAAGTTTATGTAGTTCAACATT
* *
74379 ATCAAAGGAAGAAAAAGTTCATAATGAGAAGAACTTGTTCAATCTTTTACTCAAATCCATCATAG
1 ATCAAAGGAAGAAAAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTACTCAAATCCATCACAG
* * * * *
74444 AAGGAGGTAGATCAACATTGTCATCCTTGTTAGATTTCATCACAGAAATAGGCGGATCATCATAA
66 AAGGAGGTAGATAAACATTGTCATACTTGCTAGATTTCATCACAGAAAGAGGCGGATCAACATAA
*
74509 TCAAAGGAAGAATAAGTT
131 TCAAAGGAAGAAGAAGTT
74527 CATAATGAGA
Statistics
Matches: 131, Mismatches: 16, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
164 128 0.98
165 3 0.02
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.28
Consensus pattern (164 bp):
ATCAAAGGAAGAAAAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTACTCAAATCCATCACAG
AAGGAGGTAGATAAACATTGTCATACTTGCTAGATTTCATCACAGAAAGAGGCGGATCAACATAA
TCAAAGGAAGAAGAAGTTTATGTAGTTCAACATT
Found at i:74609 original size:129 final size:129
Alignment explanation
Indices: 74379--74679 Score: 410
Period size: 129 Copynumber: 2.3 Consensus size: 129
74369 GTTCAACATT
* *
74379 ATCAAAGGAAGAAAAAGTTCATAATGAGAAGAACTTGTTCAATCTTTTACTCAAATCCATCATAG
1 ATCAAAGGAAGAAAAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTACTCAAATCCATCACAG
* * ** * * *
74444 AAGGAGGTAGATCAACATTGTCATCCTTGTTAGATTTCATCACAGAAA-TAGGCGGATCATCATA
66 AAGGAGGTAGATAAAAATTGTCAAACTTGCTAGATTTCATCACA-AAAGGAGGCGGATCAGCATA
* *
74508 ATCAAAGGAAGAATAAGTTCATAATGAGAAGAACTTGTTCGACCTTTTACTCAAATCCATCACAG
1 ATCAAAGGAAGAAAAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTACTCAAATCCATCACAG
* *
74573 AAGGAGGTAGATAAAAATTGTCAAACTTGCTAGATTTCATCACAAAAGGAGGTGGATTAGCATA
66 AAGGAGGTAGATAAAAATTGTCAAACTTGCTAGATTTCATCACAAAAGGAGGCGGATCAGCATA
* * * * *
74637 GTCAACGGAAGAAGAAGTTCAT-ATG-GGAGAGCTTGTTCAACCT
1 ATCAAAGGAAGAAAAAGTTCATAATGAGAAGAACTTGTTCAACCT
74680 CAGTAGATGC
Statistics
Matches: 152, Mismatches: 19, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
127 15 0.10
128 6 0.04
129 131 0.86
ACGTcount: A:0.39, C:0.16, G:0.20, T:0.26
Consensus pattern (129 bp):
ATCAAAGGAAGAAAAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTACTCAAATCCATCACAG
AAGGAGGTAGATAAAAATTGTCAAACTTGCTAGATTTCATCACAAAAGGAGGCGGATCAGCATA
Found at i:74649 original size:293 final size:292
Alignment explanation
Indices: 74087--74655 Score: 958
Period size: 293 Copynumber: 1.9 Consensus size: 292
74077 GATCAGCATG
*
74087 ATCAAAGGAAGAAAAAGTTCATAATGAGAAAACTTGTTCGACCTTTTACTCAAATCCATCACAGA
1 ATCAAAGGAAGAAAAAGTTCATAATGAGAAAACTTGTTCAACCTTTTACTCAAATCCATCACAGA
* * * * *
74152 ATGAGGTGGATCAATATTGTCATCCTTGTTATATTTCATCACAGAAGGAGGAGGATCATCATAAT
66 AGGAGGTAGATCAACATTGTCATCCTTGTTAGATTTCATCACAGAAAGAGGAGGATCATCATAAT
* *
74217 CAAAGGAAGAATAAGTTCATAATGAGAAGTACTTGTTCGACCTTTTACTTAAATCCATCACAGAA
131 CAAAGGAAGAATAAGTTCATAATGAGAAGAACTTGTTCGACCTTTTACTCAAATCCATCACAGAA
* * * *
74282 GGAGGTGGATAAACATTGTCATACTTGCTATATTTCATCACAAAAGGAGGTGGATCAACATAGTC
196 GGAGGTAGATAAAAATTGTCAAACTTGCTAGATTTCATCACAAAAGGAGGTGGATCAACATAGTC
74347 AAAGGAAGAAGAAGTTTATGTAGTTCAACATT
261 AAAGGAAGAAGAAGTTTATGTAGTTCAACATT
* *
74379 ATCAAAGGAAGAAAAAGTTCATAATGAGAAGAACTTGTTCAATCTTTTACTCAAATCCATCATAG
1 ATCAAAGGAAGAAAAAGTTCATAATGAGAA-AACTTGTTCAACCTTTTACTCAAATCCATCACAG
* *
74444 AAGGAGGTAGATCAACATTGTCATCCTTGTTAGATTTCATCACAGAAATAGGCGGATCATCATAA
65 AAGGAGGTAGATCAACATTGTCATCCTTGTTAGATTTCATCACAGAAAGAGGAGGATCATCATAA
74509 TCAAAGGAAGAATAAGTTCATAATGAGAAGAACTTGTTCGACCTTTTACTCAAATCCATCACAGA
130 TCAAAGGAAGAATAAGTTCATAATGAGAAGAACTTGTTCGACCTTTTACTCAAATCCATCACAGA
* *
74574 AGGAGGTAGATAAAAATTGTCAAACTTGCTAGATTTCATCACAAAAGGAGGTGGATTAGCATAGT
195 AGGAGGTAGATAAAAATTGTCAAACTTGCTAGATTTCATCACAAAAGGAGGTGGATCAACATAGT
*
74639 CAACGGAAGAAGAAGTT
260 CAAAGGAAGAAGAAGTT
74656 CATATGGGAG
Statistics
Matches: 257, Mismatches: 19, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
292 30 0.12
293 227 0.88
ACGTcount: A:0.39, C:0.15, G:0.19, T:0.27
Consensus pattern (292 bp):
ATCAAAGGAAGAAAAAGTTCATAATGAGAAAACTTGTTCAACCTTTTACTCAAATCCATCACAGA
AGGAGGTAGATCAACATTGTCATCCTTGTTAGATTTCATCACAGAAAGAGGAGGATCATCATAAT
CAAAGGAAGAATAAGTTCATAATGAGAAGAACTTGTTCGACCTTTTACTCAAATCCATCACAGAA
GGAGGTAGATAAAAATTGTCAAACTTGCTAGATTTCATCACAAAAGGAGGTGGATCAACATAGTC
AAAGGAAGAAGAAGTTTATGTAGTTCAACATT
Found at i:75644 original size:19 final size:20
Alignment explanation
Indices: 75601--75649 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 20
75591 AAAGTTGTTT
75601 TTAAATAATAAAAAATAAGAA
1 TTAAATAA-AAAAAATAAGAA
* *
75622 TTAAATAAAAGAAA-AATAA
1 TTAAATAAAAAAAATAAGAA
75641 TTAAATAAA
1 TTAAATAAA
75650 CAAATTAAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
19 13 0.50
20 5 0.19
21 8 0.31
ACGTcount: A:0.71, C:0.00, G:0.04, T:0.24
Consensus pattern (20 bp):
TTAAATAAAAAAAATAAGAA
Found at i:77998 original size:5 final size:5
Alignment explanation
Indices: 77988--78048 Score: 52
Period size: 5 Copynumber: 11.8 Consensus size: 5
77978 TGTTCAGAGA
* ** *
77988 AAAAT AAAAT AAAATT AAGCAT CTAAT AAAAT AAAAT AAAAT -AAAT GAAAT
1 AAAAT AAAAT AAAA-T AA-AAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT
78039 GAAAAT AAAA
1 -AAAAT AAAA
78049 CGAAATGGGT
Statistics
Matches: 45, Mismatches: 7, Indels: 8
0.75 0.12 0.13
Matches are distributed among these distances:
4 4 0.09
5 32 0.71
6 8 0.18
7 1 0.02
ACGTcount: A:0.70, C:0.03, G:0.05, T:0.21
Consensus pattern (5 bp):
AAAAT
Found at i:80296 original size:19 final size:20
Alignment explanation
Indices: 80258--80303 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 20
80248 GGGATTTTTA
80258 AAATAAAAAAAATAAGAATT
1 AAATAAAAAAAATAAGAATT
* *
80278 AAATAAAAGAAA-AATAATT
1 AAATAAAAAAAATAAGAATT
80297 AAATAAA
1 AAATAAA
80304 CAAATTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 13 0.54
20 11 0.46
ACGTcount: A:0.76, C:0.00, G:0.04, T:0.20
Consensus pattern (20 bp):
AAATAAAAAAAATAAGAATT
Found at i:81014 original size:65 final size:65
Alignment explanation
Indices: 80887--81014 Score: 188
Period size: 65 Copynumber: 2.0 Consensus size: 65
80877 TAAAACATAT
* * *
80887 TAAATCCTAATTAAAACACTTAAAACTATCTGAACTAAAATACCTAAAAGAATAATATAATATTC
1 TAAATCCTAATTAAAACACTTAAAACTATCTCAACTAAAATACCTAAAACAATAATAAAATATTC
*
80952 TAAATCCTAATTAAAACAC-TAAAACCTATTTCAACTAAAATACCTAAAACAA-AGATAAAATAT
1 TAAATCCTAATTAAAACACTTAAAA-CTATCTCAACTAAAATACCTAAAACAATA-ATAAAATAT
81015 AAAAATAATA
Statistics
Matches: 57, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
64 6 0.11
65 51 0.89
ACGTcount: A:0.54, C:0.16, G:0.02, T:0.27
Consensus pattern (65 bp):
TAAATCCTAATTAAAACACTTAAAACTATCTCAACTAAAATACCTAAAACAATAATAAAATATTC
Found at i:95723 original size:18 final size:17
Alignment explanation
Indices: 95673--95725 Score: 61
Period size: 18 Copynumber: 3.0 Consensus size: 17
95663 TATTGGGTTT
*
95673 TTTTTATTTTCTTTCAA
1 TTTTTATTTTCTTTTAA
* *
95690 CTTTTATTTTTATTTTAA
1 TTTTTA-TTTTCTTTTAA
95708 GTTTTTATTTTCTTTTAA
1 -TTTTTATTTTCTTTTAA
95726 AAATGCTAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
17 5 0.17
18 19 0.66
19 5 0.17
ACGTcount: A:0.19, C:0.08, G:0.02, T:0.72
Consensus pattern (17 bp):
TTTTTATTTTCTTTTAA
Found at i:97951 original size:39 final size:39
Alignment explanation
Indices: 97883--97978 Score: 131
Period size: 39 Copynumber: 2.5 Consensus size: 39
97873 CACATAAGGA
* *
97883 CCTACTGTAAGGTCTTAGCCTGATGACAAAGCAGAGGTG
1 CCTACGGTAAGGTCTTAGCCCGATGACAAAGCAGAGGTG
*
97922 CCTTCGGTAAGGTCTTAGCCCGA-GCACAAAGCAGAGGTG
1 CCTACGGTAAGGTCTTAGCCCGATG-ACAAAGCAGAGGTG
* *
97961 CCTACGATAAGGCCTTAG
1 CCTACGGTAAGGTCTTAG
97979 TAGTCATAGA
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
38 1 0.02
39 49 0.98
ACGTcount: A:0.27, C:0.24, G:0.28, T:0.21
Consensus pattern (39 bp):
CCTACGGTAAGGTCTTAGCCCGATGACAAAGCAGAGGTG
Found at i:102078 original size:45 final size:43
Alignment explanation
Indices: 102008--102138 Score: 156
Period size: 45 Copynumber: 2.9 Consensus size: 43
101998 CTAGTGATAC
102008 ACACTTTAGATTAATATTTTGTTTAAACTTAAACATAAAATTTAA
1 ACACTTTA-ATTAAT-TTTTGTTTAAACTTAAACATAAAATTTAA
* * *
102053 ACGCTTTATATTAATTTTCTATTTAAA-TTCACACATAAAATTTAA
1 ACACTTTA-ATTAATTTT-TGTTTAAACTT-AAACATAAAATTTAA
* *
102098 ACACTTTAACTTAGTTTTTGTTTAAACTTAAACATGAAATT
1 ACACTTTAA-TTAATTTTTGTTTAAACTTAAACATAAAATT
102139 AATATTTTGT
Statistics
Matches: 73, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
44 23 0.32
45 50 0.68
ACGTcount: A:0.40, C:0.11, G:0.05, T:0.44
Consensus pattern (43 bp):
ACACTTTAATTAATTTTTGTTTAAACTTAAACATAAAATTTAA
Found at i:102560 original size:2 final size:2
Alignment explanation
Indices: 102553--102602 Score: 100
Period size: 2 Copynumber: 25.0 Consensus size: 2
102543 CTACCTAGGA
102553 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
102595 AT AT AT AT
1 AT AT AT AT
102603 TCATATCTTG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:102924 original size:14 final size:14
Alignment explanation
Indices: 102905--102940 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
102895 ATCTGTTTGA
102905 TTATGTTCGTTCAT
1 TTATGTTCGTTCAT
*
102919 TTATGTTCGTTCGT
1 TTATGTTCGTTCAT
102933 TTATGTTC
1 TTATGTTC
102941 TCCAGACCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.11, C:0.14, G:0.17, T:0.58
Consensus pattern (14 bp):
TTATGTTCGTTCAT
Found at i:103136 original size:14 final size:14
Alignment explanation
Indices: 103117--103153 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
103107 ACTAAATAAT
103117 TTTATGTTCGTTTG
1 TTTATGTTCGTTTG
103131 TTTATGTTCGTTTG
1 TTTATGTTCGTTTG
*
103145 TTTGTGTTC
1 TTTATGTTC
103154 ATTTTTGTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.05, C:0.08, G:0.22, T:0.65
Consensus pattern (14 bp):
TTTATGTTCGTTTG
Found at i:104509 original size:28 final size:29
Alignment explanation
Indices: 104450--104510 Score: 79
Period size: 28 Copynumber: 2.1 Consensus size: 29
104440 ATCAAATCGT
104450 GGAATAAATCCCATGCAGAAAAAAGATCAG
1 GGAATAAATCCCAT-CAGAAAAAAGATCAG
* * *
104480 GGAATAAATCCCAT-ATAAAATAGATTAG
1 GGAATAAATCCCATCAGAAAAAAGATCAG
104508 GGA
1 GGA
104511 CTATACCAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 14 0.50
30 14 0.50
ACGTcount: A:0.49, C:0.13, G:0.20, T:0.18
Consensus pattern (29 bp):
GGAATAAATCCCATCAGAAAAAAGATCAG
Found at i:106008 original size:82 final size:83
Alignment explanation
Indices: 105867--106070 Score: 230
Period size: 83 Copynumber: 2.5 Consensus size: 83
105857 TCAATTGGGA
* * * * * * *
105867 AACTGAGTAGAGGTCGAGACATGTTTTTATGGAGGCTTGCGATTCGAACCATTCGTGATC-ACCA
1 AACTGAGTAGAGGTCAAGACATATTTTCATGGAGGCTTACAATTCAAACCATTCATGATCTACCA
* *
105931 TTAGTCGTCAATCGGGTG
66 TTAGCCATCAATCGGGTG
* * * * **
105949 AACTGAGTAGAGGTCAAGTCGTATTTTCGTGGAGGCTTACAATTCAAACCGTTCATGATCTTTCA
1 AACTGAGTAGAGGTCAAGACATATTTTCATGGAGGCTTACAATTCAAACCATTCATGATCTACCA
106014 TTAGCCATCAATCGGGTG
66 TTAGCCATCAATCGGGTG
* * * *
106032 AACTGAGTAGAGGCCAAGACATGTTTTCTTGGTGGCTTA
1 AACTGAGTAGAGGTCAAGACATATTTTCATGGAGGCTTA
106071 AGATTTGAAC
Statistics
Matches: 100, Mismatches: 21, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
82 49 0.49
83 51 0.51
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.30
Consensus pattern (83 bp):
AACTGAGTAGAGGTCAAGACATATTTTCATGGAGGCTTACAATTCAAACCATTCATGATCTACCA
TTAGCCATCAATCGGGTG
Found at i:109814 original size:17 final size:17
Alignment explanation
Indices: 109777--109819 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
109767 AGTGTTTGTT
* * *
109777 TCTCGAACGAGAGTTTT
1 TCTCGAAAGAGAATTTC
109794 TCTCGAAAGAGAATTTC
1 TCTCGAAAGAGAATTTC
109811 TCTC-AAAGA
1 TCTCGAAAGA
109820 AAGGGAATGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
16 5 0.22
17 18 0.78
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.30
Consensus pattern (17 bp):
TCTCGAAAGAGAATTTC
Found at i:113093 original size:82 final size:82
Alignment explanation
Indices: 112949--113103 Score: 229
Period size: 82 Copynumber: 1.9 Consensus size: 82
112939 CTCTCAATCG
* * *
112949 GGTGAACTGAGTTGAGGCCGAGGCATGTTTTCGTGGAGGCTTACGATTTAAACCATTTGTGATCA
1 GGTGAACTGAGTAGAGGCCGAGACATGTTTTCGTGGAGGCTTACGATTTAAACCATTCGTGATCA
113014 CCATTAGCCGTCAACCA
66 CCATTAGCCGTCAACCA
* * ** * *
113031 GGTGAACTGAGTAGAGGCCGAGACGTGTTTTCGTTGAGGCTTTTGATTTGAACCGTTCGTGATCA
1 GGTGAACTGAGTAGAGGCCGAGACATGTTTTCGTGGAGGCTTACGATTTAAACCATTCGTGATCA
113096 CCATTAGC
66 CCATTAGC
113104 TGTTGATGTA
Statistics
Matches: 64, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
82 64 1.00
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (82 bp):
GGTGAACTGAGTAGAGGCCGAGACATGTTTTCGTGGAGGCTTACGATTTAAACCATTCGTGATCA
CCATTAGCCGTCAACCA
Found at i:114019 original size:4 final size:4
Alignment explanation
Indices: 114010--114044 Score: 70
Period size: 4 Copynumber: 8.8 Consensus size: 4
114000 ATGTTGTTTC
114010 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATA
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATA
114045 TATATATATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAA
Found at i:114049 original size:2 final size:2
Alignment explanation
Indices: 114042--114073 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
114032 AAATAAATAA
114042 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
114074 CATTAATACT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:119482 original size:128 final size:128
Alignment explanation
Indices: 119254--119622 Score: 715
Period size: 126 Copynumber: 2.9 Consensus size: 128
119244 ATCGGAGTAT
119254 TATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTATCA
1 TATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTATCA
119319 TTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTCAC
66 TTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTCAC
119382 TATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTATCA
1 TATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTATCA
*
119447 TTGTCCTATTATGTCACTCATGTCCCTCGGGGACACTAG--ATATCAGTACCTATTATTTCAC
66 TTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTCAC
119508 TATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTATCA
1 TATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTATCA
119573 TTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTA
66 TTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTA
119623 AATCAGGTAA
Statistics
Matches: 237, Mismatches: 2, Indels: 4
0.98 0.01 0.02
Matches are distributed among these distances:
126 125 0.53
128 112 0.47
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.32
Consensus pattern (128 bp):
TATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTATCA
TTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTCAC
Found at i:120080 original size:33 final size:34
Alignment explanation
Indices: 120019--120112 Score: 112
Period size: 27 Copynumber: 3.0 Consensus size: 34
120009 AAATTTAATG
*
120019 TTAAATTTCGAATACTATAATTTATATTTTAAAT
1 TTAAATTTCGAATAATATAATTTATATTTTAAAT
*
120053 TTAAATTT-GAAT-A-AT-A-TTAT-TTTT-ATT
1 TTAAATTTCGAATAATATAATTTATATTTTAAAT
*
120080 TTAAATTTCGAATAATATAATTTGTATTTTAAA
1 TTAAATTTCGAATAATATAATTTATATTTTAAA
120113 AACATTTATC
Statistics
Matches: 49, Mismatches: 4, Indels: 14
0.73 0.06 0.21
Matches are distributed among these distances:
27 10 0.20
28 8 0.16
29 5 0.10
30 3 0.06
31 3 0.06
32 3 0.06
33 8 0.16
34 9 0.18
ACGTcount: A:0.40, C:0.03, G:0.04, T:0.52
Consensus pattern (34 bp):
TTAAATTTCGAATAATATAATTTATATTTTAAAT
Found at i:120082 original size:27 final size:28
Alignment explanation
Indices: 120019--120112 Score: 100
Period size: 28 Copynumber: 3.2 Consensus size: 28
120009 AAATTTAATG
*
120019 TTAAATTTCGAATACTATAATTTATATTTTAAAT
1 TTAAATTTCGAATA--AT-A-TTAT-TTTT-ATT
120053 TTAAATTT-GAATAATATTATTTTTATT
1 TTAAATTTCGAATAATATTATTTTTATT
* *
120080 TTAAATTTCGAATAATATAATTTGTATT
1 TTAAATTTCGAATAATATTATTTTTATT
120108 TTAAA
1 TTAAA
120113 AACATTTATC
Statistics
Matches: 56, Mismatches: 3, Indels: 8
0.84 0.04 0.12
Matches are distributed among these distances:
27 10 0.18
28 26 0.46
29 4 0.07
30 1 0.02
31 2 0.04
33 5 0.09
34 8 0.14
ACGTcount: A:0.40, C:0.03, G:0.04, T:0.52
Consensus pattern (28 bp):
TTAAATTTCGAATAATATTATTTTTATT
Found at i:120684 original size:21 final size:21
Alignment explanation
Indices: 120631--120724 Score: 136
Period size: 21 Copynumber: 4.5 Consensus size: 21
120621 TATGGTATAA
*
120631 AACCCTGCGGGCTAGGCATGT
1 AACCCTGCGGGCTAGGAATGT
*
120652 AA-CCTGGTGGGCTAGGAATGT
1 AACCCT-GCGGGCTAGGAATGT
*
120673 AACCCTGCGGGCTTGGAATGT
1 AACCCTGCGGGCTAGGAATGT
*
120694 AACCCTGCGGGCTCGGAATGT
1 AACCCTGCGGGCTAGGAATGT
120715 AACCCTGCGG
1 AACCCTGCGG
120725 AGATGGCATA
Statistics
Matches: 66, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
20 3 0.05
21 60 0.91
22 3 0.05
ACGTcount: A:0.20, C:0.26, G:0.34, T:0.20
Consensus pattern (21 bp):
AACCCTGCGGGCTAGGAATGT
Found at i:120748 original size:42 final size:41
Alignment explanation
Indices: 120631--120748 Score: 130
Period size: 42 Copynumber: 2.8 Consensus size: 41
120621 TATGGTATAA
*
120631 AACCCTGCGGGCTAGGCATGTAACCTGGTGGGCTAGGAATGT
1 AACCCTGCGGGAT-GGCATGTAACCTGGTGGGCTAGGAATGT
* * * *
120673 AACCCTGCGGGCTTGGAATGTAACCCT-GCGGGCTCGGAATGT
1 AACCCTGCGGG-ATGGCATGTAA-CCTGGTGGGCTAGGAATGT
* *
120715 AACCCTGCGGAGATGGCATATAAACTGGTGGGCT
1 AACCCTGCGG-GATGGCATGTAACCTGGTGGGCT
120749 TGGCATATGA
Statistics
Matches: 63, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
41 2 0.03
42 56 0.89
43 5 0.08
ACGTcount: A:0.22, C:0.23, G:0.34, T:0.21
Consensus pattern (41 bp):
AACCCTGCGGGATGGCATGTAACCTGGTGGGCTAGGAATGT
Found at i:120754 original size:21 final size:21
Alignment explanation
Indices: 120728--120775 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
120718 CCTGCGGAGA
*
120728 TGGCATATAAACTGGTGGGCT
1 TGGCATATAAACTGGAGGGCT
* *
120749 TGGCATATGAAGTGGAGGGCT
1 TGGCATATAAACTGGAGGGCT
*
120770 GGGCAT
1 TGGCAT
120776 GTACCCCTGC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.23, C:0.12, G:0.40, T:0.25
Consensus pattern (21 bp):
TGGCATATAAACTGGAGGGCT
Found at i:122513 original size:17 final size:19
Alignment explanation
Indices: 122491--122534 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
122481 ATAATTATAT
122491 AAATATTAT-TTTA-ATAA
1 AAATATTATATTTACATAA
*
122508 AAATATAATATTTACATAA
1 AAATATTATATTTACATAA
*
122527 ATATATTA
1 AAATATTA
122535 ATATAAAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 8 0.36
18 4 0.18
19 10 0.45
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (19 bp):
AAATATTATATTTACATAA
Found at i:122526 original size:19 final size:18
Alignment explanation
Indices: 122478--122564 Score: 62
Period size: 17 Copynumber: 5.1 Consensus size: 18
122468 TTCTAAATAA
* *
122478 ATAATAATT-ATATAAAT
1 ATAATATTTAATAAAAAT
*
122495 ATTAT-TTTAATAAAAAT
1 ATAATATTTAATAAAAAT
*
122512 ATAATATTTACATAAATAT
1 ATAATATTTA-ATAAAAAT
122531 ATTAATA--T-A-AAAAAT
1 A-TAATATTTAATAAAAAT
122546 ATAACTATTTAA-AAAAAT
1 ATAA-TATTTAATAAAAAT
122564 A
1 A
122565 CTATAATAAA
Statistics
Matches: 56, Mismatches: 6, Indels: 15
0.73 0.08 0.19
Matches are distributed among these distances:
14 3 0.05
15 8 0.14
16 3 0.05
17 16 0.29
18 13 0.23
19 8 0.14
20 5 0.09
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (18 bp):
ATAATATTTAATAAAAAT
Found at i:122564 original size:35 final size:33
Alignment explanation
Indices: 122506--122580 Score: 89
Period size: 35 Copynumber: 2.2 Consensus size: 33
122496 TTATTTTAAT
* *
122506 AAAAATATAATATTTACATAAATA-TATTAATATA
1 AAAAATATAATATTTAAAAAAATACTA-TAATA-A
122540 AAAAATATAACTATTTAAAAAAATACTATAATAA
1 AAAAATATAA-TATTTAAAAAAATACTATAATAA
122574 AATAAAT
1 AA-AAAT
122581 TTCTTACCAC
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
34 13 0.36
35 21 0.58
36 2 0.06
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (33 bp):
AAAAATATAATATTTAAAAAAATACTATAATAA
Found at i:123019 original size:3 final size:3
Alignment explanation
Indices: 123013--123086 Score: 141
Period size: 3 Copynumber: 25.0 Consensus size: 3
123003 CTACTACAAC
123013 TAT TAT T-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
123060 TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT
123087 ATAACATATC
Statistics
Matches: 70, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
2 2 0.03
3 68 0.97
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:124810 original size:2 final size:2
Alignment explanation
Indices: 124803--124842 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
124793 TCACTTTTTA
124803 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
124843 TATTTATAGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:127758 original size:15 final size:16
Alignment explanation
Indices: 127740--127769 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
127730 TTAAAAGTTT
127740 AGGGA-CTAAATTTAA
1 AGGGACCTAAATTTAA
127755 AGGGACCTAAATTTA
1 AGGGACCTAAATTTA
127770 TATATTAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.10, G:0.20, T:0.27
Consensus pattern (16 bp):
AGGGACCTAAATTTAA
Found at i:128360 original size:4 final size:4
Alignment explanation
Indices: 128351--128381 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
128341 GCTAAATATA
128351 TAAT TAAT TAAT TAAT TAAT TAAT TAAT TAA
1 TAAT TAAT TAAT TAAT TAAT TAAT TAAT TAA
128382 ATGACTAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (4 bp):
TAAT
Found at i:129474 original size:3 final size:3
Alignment explanation
Indices: 129466--129557 Score: 184
Period size: 3 Copynumber: 30.7 Consensus size: 3
129456 TCTTTTTTCT
129466 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
129514 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
129558 TGGATAAAAA
Statistics
Matches: 89, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 89 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:129879 original size:40 final size:40
Alignment explanation
Indices: 129812--129949 Score: 179
Period size: 40 Copynumber: 3.4 Consensus size: 40
129802 AAACATTGAC
** *
129812 CCAACTCCTT-TGTGATGGTTGACCCAAGGTGATGCTGAT
1 CCAACTCCTTATGTGATGGACGAGCCAAGGTGATGCTGAT
129851 CCAACTCCTTATGTGATGGACGAGCCAAGGTGATGCTGAT
1 CCAACTCCTTATGTGATGGACGAGCCAAGGTGATGCTGAT
* * * * *
129891 CCAACTCCTTATATGATGGGCAAGCGAAATGATGATGCTGAT
1 CCAACTCCTTATGTGATGGACGAGC-CAA-GGTGATGCTGAT
129933 CCAACTCCTTATGTGAT
1 CCAACTCCTTATGTGAT
129950 TGAAGAGCAA
Statistics
Matches: 87, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
39 10 0.11
40 48 0.55
41 2 0.02
42 27 0.31
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.28
Consensus pattern (40 bp):
CCAACTCCTTATGTGATGGACGAGCCAAGGTGATGCTGAT
Found at i:129968 original size:42 final size:41
Alignment explanation
Indices: 129841--129960 Score: 154
Period size: 42 Copynumber: 2.9 Consensus size: 41
129831 TGACCCAAGG
* * *
129841 TGATGCTGATCCAACTCCTTATGTGATGGACGAGCCAA-GG
1 TGATGCTGATCCAACTCCTTATGTGATGGAAGAGCAAATGA
* *
129881 TGATGCTGATCCAACTCCTTATATGATGGGCA-AGCGAAATGA
1 TGATGCTGATCCAACTCCTTATGTGAT-GGAAGAGC-AAATGA
*
129923 TGATGCTGATCCAACTCCTTATGTGATTGAAGAGCAAA
1 TGATGCTGATCCAACTCCTTATGTGATGGAAGAGCAAA
129961 ATAATGATAC
Statistics
Matches: 68, Mismatches: 8, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
40 29 0.43
41 9 0.13
42 30 0.44
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (41 bp):
TGATGCTGATCCAACTCCTTATGTGATGGAAGAGCAAATGA
Found at i:130202 original size:117 final size:117
Alignment explanation
Indices: 129980--130229 Score: 348
Period size: 117 Copynumber: 2.2 Consensus size: 117
129970 CTAGTCCAAA
* * *
129980 TCTTTTTGCGATAG-AT-GAGCCAAGGTTGAATAAGTTCTTCTCATTATGAGCTTCTTTTCCCTC
1 TCTTTTTGTGATAGAATCGAGCCAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTTTCCCTC
* *
130043 ATCAGATGAGTTCTTCTCATTATGAACTCGCCATTGGAAATGTTGATCCACC
66 ATCAGATGAGTTCTTCTCATTAAGAACCCGCCATTGGAAATGTTGATCCACC
*
130095 TCTTTTTGTGATGGAATCGAGCCAAGGTTGAACAAGTTCTTCTCATTATGAACTT-TTTCTCCCT
1 TCTTTTTGTGATAGAATCGAGCCAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTT-TCCCT
* *
130159 CATCAGACT-AGTTCTTCTCATTAAGAACCCTTCCATT-GAAATGTTGATCCATC
65 CATCAGA-TGAGTTCTTCTCATTAAGAACCC-GCCATTGGAAATGTTGATCCACC
* *
130212 TCATTATGTGATAGAATC
1 TCTTTTTGTGATAGAATC
130230 AATCATAGTG
Statistics
Matches: 119, Mismatches: 11, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
115 12 0.10
116 5 0.04
117 96 0.81
118 6 0.05
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.38
Consensus pattern (117 bp):
TCTTTTTGTGATAGAATCGAGCCAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTTTCCCTC
ATCAGATGAGTTCTTCTCATTAAGAACCCGCCATTGGAAATGTTGATCCACC
Found at i:130559 original size:118 final size:117
Alignment explanation
Indices: 130011--130564 Score: 341
Period size: 117 Copynumber: 4.7 Consensus size: 117
130001 AAGGTTGAAT
* * * * *
130011 AAGTTCTTCTCATTATGAGCTTCTTTTCCCTCATCAGATGAGTTCTTCTCATTATGAACTC-GCC
1 AAGTTATTCTCATTATGAACTTCTTATCCCTCATCAGACGAGTTCTTCTCATTATGAACTCTTCC
* * * * * * * *
130075 ATTGGAAATGTTGATCCACCTCTTTTTGTGATGGAATCGAGCCAAGGTTGAAC
66 ATTGGAAATGTTGATCCACCTCATTCTGTGAT-GAATCAAACAAAAGCTAAAC
* * * * * *
130128 AAGTTCTTCTCATTATGAACTTTTTCTCCCTCATCAGACTAGTTCTTCTCATTAAGAACCCTTCC
1 AAGTTATTCTCATTATGAACTTCTTATCCCTCATCAGACGAGTTCTTCTCATTATGAACTCTTCC
* * * ** * **
130193 ATT-GAAATGTTGATCCATCTCATTATGTGATAGAATCAATCATAGTGTTGGTAC
66 ATTGGAAATGTTGATCCACCTCATTCTGTGAT-GAATCAAACA-AAAGCT-AAAC
* * * ** * ** * * ** * ** * *
130247 -TGATCCA-ACTCCGTATGCGA-TAGATGAGCAAAGT-GTTTGAACAAGTTATTCTCATTATGAA
1 AAG-T-TATTCTCATTATG-AACT-TCTTATC--CCTCATCAG-ACGAGTTCTTCTCATTATGAA
* * * * * * *
130308 CTTCTT-CATTGGAAATATTGATCCACCTCCTTCTGTGATGGATCGAGCAAAAGTTGAAC
59 C-TCTTCCATTGGAAATGTTGATCCACCTCATTCTGTGATGAATCAAACAAAAGCTAAAC
* * * *
130367 AAGTTATTCTCATTATGAATTTCTTCTCCCTCATCAGACGAGTTCTTCTCATTATGAACTATTCT
1 AAGTTATTCTCATTATGAACTTCTTATCCCTCATCAGACGAGTTCTTCTCATTATGAACTCTTCC
** * *
130432 ATTAAAAATGTTGATCCACCTTATTCTGTGATAGAATCAAACAAAGGCTAAAC
66 ATTGGAAATGTTGATCCACCTCATTCTGTGAT-GAATCAAACAAAAGCTAAAC
* * * * * *
130485 ATGTTCTTCTTATTATGAACTTCTTATCTCTCAT-AGGATGAGTTCTTCTCATTATAAACTCTTC
1 AAGTTATTCTCATTATGAACTTCTTATCCCTCATCA-GACGAGTTCTTCTCATTATGAACTCTTC
130549 CATTGGAAATGTTGAT
65 CATTGGAAATGTTGAT
130565 TGATTTATCC
Statistics
Matches: 326, Mismatches: 92, Indels: 37
0.72 0.20 0.08
Matches are distributed among these distances:
116 3 0.01
117 135 0.41
118 92 0.28
119 16 0.05
120 15 0.05
121 7 0.02
122 31 0.10
123 27 0.08
ACGTcount: A:0.28, C:0.20, G:0.15, T:0.37
Consensus pattern (117 bp):
AAGTTATTCTCATTATGAACTTCTTATCCCTCATCAGACGAGTTCTTCTCATTATGAACTCTTCC
ATTGGAAATGTTGATCCACCTCATTCTGTGATGAATCAAACAAAAGCTAAAC
Found at i:131381 original size:54 final size:54
Alignment explanation
Indices: 131288--131759 Score: 423
Period size: 55 Copynumber: 8.7 Consensus size: 54
131278 ATTTACAGTT
* ** * * *
131288 ATCATCAAGAAACCCCTAAAACATTGGGCTTAGTTTCTTTAAAAATTCATTTGAAT
1 ATCATCAAGAAA-CCCTGAAA-ATCAGGCTTAGCTTCTTTCAAAATTCATTTGAAA
* *
131344 A-CATCAAGAAACCCATGAAAAGCAGGCTTAGCTTCTTTCAACATTCATTTGAAA
1 ATCATCAAGAAACCC-TGAAAATCAGGCTTAGCTTCTTTCAAAATTCATTTGAAA
* * *
131398 A-CATCCAA-AAACCCTTGAAAAT-ATGCTTAGCTTCTTTGAAAACTCATTT-ATAA
1 ATCAT-CAAGAAACCC-TGAAAATCAGGCTTAGCTTCTTTCAAAATTCATTTGA-AA
** * * * *
131451 ATCATCAAGAAACTTTTGAAAATCAGACTTAG-TTCTTTTGAAAATTCTTTTTAAA
1 ATCATCAAGAAAC-CCTGAAAATCAGGCTTAGCTTC-TTTCAAAATTCATTTGAAA
* * * *
131506 A-CATCAAGAAACCCCTG-AAATCAGGCTTAGCTTCTTTGAGAACTCATTTAAAA
1 ATCATCAAGAAA-CCCTGAAAATCAGGCTTAGCTTCTTTCAAAATTCATTTGAAA
* * *
131559 ATCATCAAGAAACTTCC-AAAAATCAGACTTAACTTCTTTCAAAATAT-ATTT-AAA
1 ATCATCAAGAAAC--CCTGAAAATCAGGCTTAGCTTCTTTCAAAAT-TCATTTGAAA
*
131613 CATCATCAAGAAACTTCC-GAAAAT-AGGACTTAACTTCTTTCAAAATTCATTTGAAA
1 -ATCATCAAGAAAC--CCTGAAAATCAGG-CTTAGCTTCTTTCAAAATTCATTTGAAA
* * *
131669 ATCATCAAGAAACTTCTGAAAATCAGACTTAGCTTCTTTCCAAATTCATTTGAAA
1 ATCATCAAGAAAC-CCTGAAAATCAGGCTTAGCTTCTTTCAAAATTCATTTGAAA
*
131724 AT-ATCAAGAAACCCCTGAAAATCAGGCTTAGTTTCT
1 ATCATCAAGAAA-CCCTGAAAATCAGGCTTAGCTTCT
131760 AAAAAAATCA
Statistics
Matches: 351, Mismatches: 42, Indels: 48
0.80 0.10 0.11
Matches are distributed among these distances:
52 1 0.00
53 58 0.17
54 125 0.36
55 159 0.45
56 8 0.02
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.31
Consensus pattern (54 bp):
ATCATCAAGAAACCCTGAAAATCAGGCTTAGCTTCTTTCAAAATTCATTTGAAA
Found at i:131482 original size:108 final size:109
Alignment explanation
Indices: 131290--131759 Score: 496
Period size: 108 Copynumber: 4.3 Consensus size: 109
131280 TTACAGTTAT
* ** * * * *
131290 CATCAAGAAACCCCTAAAACATTGGGCTTAGTTTCTTTAAAAATTCA-TT-TGAATACATCAAGA
1 CATCAAGAAACCCCTGAAA-ATCAGGCTTAGCTTCTTTGAAAACTCATTTATAAAT-CATCAAGA
* * * *
131353 AAC-CCATGAAAAGCAGGCTTAGCTTCTTTCAACATTCATTTGAAAA
64 AACTTC-TGAAAATCAGACTTAGCTTCTTTCAAAATTCATTTGAAAA
* *
131399 CATCCAA-AAACCCTTGAAAAT-ATGCTTAGCTTCTTTGAAAACTCATTTATAAATCATCAAGAA
1 CAT-CAAGAAACCCCTGAAAATCAGGCTTAGCTTCTTTGAAAACTCATTTATAAATCATCAAGAA
* * * *
131462 ACTTTTGAAAATCAGACTTAG-TTCTTTTGAAAATTCTTTTTAAAA
65 ACTTCTGAAAATCAGACTTAGCTTC-TTTCAAAATTCATTTGAAAA
* *
131507 CATCAAGAAACCCCTG-AAATCAGGCTTAGCTTCTTTGAGAACTCATTTAAAAATCATCAAGAAA
1 CATCAAGAAACCCCTGAAAATCAGGCTTAGCTTCTTTGAAAACTCATTTATAAATCATCAAGAAA
** *
131571 CTTCCAAAAATCAGACTTAACTTCTTTCAAAATAT-ATTT-AAACA
66 CTTCTGAAAATCAGACTTAGCTTCTTTCAAAAT-TCATTTGAAA-A
* * * *
131615 TCATCAAGAAACTTCC-GAAAAT-AGGACTTAACTTCTTTCAAAATTCATTTGA-AAATCATCAA
1 -CATCAAGAAAC-CCCTGAAAATCAGG-CTTAGCTTCTTTGAAAACTCATTT-ATAAATCATCAA
*
131677 GAAACTTCTGAAAATCAGACTTAGCTTCTTTCCAAATTCATTTGAAAA
62 GAAACTTCTGAAAATCAGACTTAGCTTCTTTCAAAATTCATTTGAAAA
* *
131725 TATCAAGAAACCCCTGAAAATCAGGCTTAGTTTCT
1 CATCAAGAAACCCCTGAAAATCAGGCTTAGCTTCT
131760 AAAAAAATCA
Statistics
Matches: 303, Mismatches: 39, Indels: 38
0.80 0.10 0.10
Matches are distributed among these distances:
107 32 0.11
108 126 0.42
109 61 0.20
110 80 0.26
111 4 0.01
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (109 bp):
CATCAAGAAACCCCTGAAAATCAGGCTTAGCTTCTTTGAAAACTCATTTATAAATCATCAAGAAA
CTTCTGAAAATCAGACTTAGCTTCTTTCAAAATTCATTTGAAAA
Found at i:133123 original size:26 final size:26
Alignment explanation
Indices: 133087--133152 Score: 132
Period size: 26 Copynumber: 2.5 Consensus size: 26
133077 GGAAAGTAGA
133087 GTGTTTCAGGTTAATTTGCAGATAAT
1 GTGTTTCAGGTTAATTTGCAGATAAT
133113 GTGTTTCAGGTTAATTTGCAGATAAT
1 GTGTTTCAGGTTAATTTGCAGATAAT
133139 GTGTTTCAGGTTAA
1 GTGTTTCAGGTTAA
133153 CTTCTTTGGT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.26, C:0.08, G:0.24, T:0.42
Consensus pattern (26 bp):
GTGTTTCAGGTTAATTTGCAGATAAT
Found at i:138087 original size:13 final size:13
Alignment explanation
Indices: 138066--138107 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
138056 TACAATAACC
*
138066 TAATCTAAATAAA
1 TAATTTAAATAAA
138079 TAATTTAAATAAA
1 TAATTTAAATAAA
*
138092 TAAATTAAAATAAA
1 T-AATTTAAATAAA
138106 TA
1 TA
138108 GACATAACAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
13 14 0.54
14 12 0.46
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.33
Consensus pattern (13 bp):
TAATTTAAATAAA
Found at i:138102 original size:14 final size:14
Alignment explanation
Indices: 138072--138107 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
138062 AACCTAATCT
*
138072 AAATAAAT-AATTT
1 AAATAAATAAATTA
138085 AAATAAATAAATTA
1 AAATAAATAAATTA
138099 AAATAAATA
1 AAATAAATA
138108 GACATAACAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
13 8 0.38
14 13 0.62
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (14 bp):
AAATAAATAAATTA
Found at i:142667 original size:16 final size:16
Alignment explanation
Indices: 142632--142667 Score: 54
Period size: 17 Copynumber: 2.2 Consensus size: 16
142622 AGTATATTCC
*
142632 TTTTATTCAGACATAT
1 TTTTATTCAAACATAT
142648 TTTTCATTCAAACATAT
1 TTTT-ATTCAAACATAT
142665 TTT
1 TTT
142668 AGAATATTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 4 0.22
17 14 0.78
ACGTcount: A:0.31, C:0.14, G:0.03, T:0.53
Consensus pattern (16 bp):
TTTTATTCAAACATAT
Found at i:143050 original size:120 final size:116
Alignment explanation
Indices: 142784--143079 Score: 365
Period size: 120 Copynumber: 2.6 Consensus size: 116
142774 GTTAGACGAC
* * *
142784 TGCTATCATATCAGAATCATAATATGCACACAAAGTGCAATCACATC---TGAAAATATACTAGT
1 TGCTATCATATCAGAATCGTAATATGCACACAAAGTGCAATCACATCAAATGTATATATACTAGT
* * * *
142846 GTTCCCACTGGTAACACCACAATATATCACATCAGAAATGAACACACATAG
66 GTACCCACCGGTAACACCACAATATATCAAATCAGAAATGAACACACACAG
* *
142897 TGCTATCACATCAGAATCAG-AATATGCAAACAAAGTGCAATCACATCAAAATGTATATATACTA
1 TGCTATCATATCAGAATC-GTAATATGCACACAAAGTGCAATCACATC-AAATGTATATATACTA
* *
142961 GTGTACCCACCGGT-ACACCACAATATATCAAAATCGGAACATATAAGCACACACAG
64 GTGTACCCACCGGTAACACCACAATATATC-AAATCAGAA-AT-GAA-CACACACAG
* *
143017 TGCTATCATATCAGAATCGTAATGTGCACACAAAGTGCAATCACATC--A-GAATATATACTAGT
1 TGCTATCATATCAGAATCGTAATATGCACACAAAGTGCAATCACATCAAATGTATATATACTAGT
143079 G
66 G
143080 CACCTTCAGG
Statistics
Matches: 158, Mismatches: 15, Indels: 17
0.83 0.08 0.09
Matches are distributed among these distances:
113 43 0.27
116 29 0.18
117 31 0.20
118 2 0.01
119 3 0.02
120 50 0.32
ACGTcount: A:0.42, C:0.22, G:0.13, T:0.23
Consensus pattern (116 bp):
TGCTATCATATCAGAATCGTAATATGCACACAAAGTGCAATCACATCAAATGTATATATACTAGT
GTACCCACCGGTAACACCACAATATATCAAATCAGAAATGAACACACACAG
Found at i:147825 original size:24 final size:24
Alignment explanation
Indices: 147730--147822 Score: 71
Period size: 24 Copynumber: 3.9 Consensus size: 24
147720 GAATATTTAA
* * *
147730 CTGATTTCTGATTTGAATTCTATT
1 CTGATATCTGATCTGAATTATATT
* * * *
147754 TTGACATCTGATCTGAAATCTATT
1 CTGATATCTGATCTGAATTATATT
* * * *
147778 CTGAT-TCCTAACCTGGATTATGTT
1 CTGATAT-CTGATCTGAATTATATT
147802 CTGATATCTGATCTGAATTAT
1 CTGATATCTGATCTGAATTAT
147823 GTTTGGGATT
Statistics
Matches: 51, Mismatches: 16, Indels: 4
0.72 0.23 0.06
Matches are distributed among these distances:
23 1 0.02
24 49 0.96
25 1 0.02
ACGTcount: A:0.25, C:0.16, G:0.14, T:0.45
Consensus pattern (24 bp):
CTGATATCTGATCTGAATTATATT
Found at i:152412 original size:24 final size:24
Alignment explanation
Indices: 152304--152412 Score: 83
Period size: 24 Copynumber: 4.5 Consensus size: 24
152294 GAATATTTTA
* * *
152304 TCTGATTTTTGATTTGAATTCTGT
1 TCTGATTTCTGATCTGAATTATGT
* ** *
152328 TTTGACATCTGATCTGAAATATGT
1 TCTGATTTCTGATCTGAATTATGT
* * * * *
152352 TCTGATTCCTAACCTGGATTCTGT
1 TCTGATTTCTGATCTGAATTATGT
*
152376 TCTGATATCTGATCTGAATTATGT
1 TCTGATTTCTGATCTGAATTATGT
* *
152400 TTTGATTTTTGAT
1 TCTGATTTCTGAT
152413 ATCTCCGTTT
Statistics
Matches: 60, Mismatches: 25, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
24 60 1.00
ACGTcount: A:0.21, C:0.13, G:0.17, T:0.50
Consensus pattern (24 bp):
TCTGATTTCTGATCTGAATTATGT
Found at i:154538 original size:23 final size:23
Alignment explanation
Indices: 154495--154541 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
154485 TGACTGGTTA
*
154495 CAACCCGAACCGAACCATTGACC
1 CAACCCGAACCCAACCATTGACC
*
154518 CAACCC-AACCCAACCCGTTGACC
1 CAACCCGAACCCAA-CCATTGACC
154541 C
1 C
154542 GACCTGTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 6 0.29
23 15 0.71
ACGTcount: A:0.32, C:0.49, G:0.11, T:0.09
Consensus pattern (23 bp):
CAACCCGAACCCAACCATTGACC
Found at i:160418 original size:40 final size:42
Alignment explanation
Indices: 160335--160418 Score: 154
Period size: 42 Copynumber: 2.0 Consensus size: 42
160325 GTAAATGGTG
160335 TTACCAATTCACTAAAGTTTGGAAGTATTATGACTTCCTATA
1 TTACCAATTCACTAAAGTTTGGAAGTATTATGACTTCCTATA
160377 TTACCAATTCACTAAAG-TTGGAAGTA-TATGACTTCCTATA
1 TTACCAATTCACTAAAGTTTGGAAGTATTATGACTTCCTATA
160417 TT
1 TT
160419 GGAAAACATC
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
40 16 0.38
41 9 0.21
42 17 0.40
ACGTcount: A:0.33, C:0.17, G:0.12, T:0.38
Consensus pattern (42 bp):
TTACCAATTCACTAAAGTTTGGAAGTATTATGACTTCCTATA
Found at i:162241 original size:66 final size:66
Alignment explanation
Indices: 162135--162266 Score: 264
Period size: 66 Copynumber: 2.0 Consensus size: 66
162125 TAATTTTCTA
162135 ATAAGCCGAGAGTTGAAGCGATGACTCAATTCCAATGTGAGAATTGAAAAGCACCTTAATAACTT
1 ATAAGCCGAGAGTTGAAGCGATGACTCAATTCCAATGTGAGAATTGAAAAGCACCTTAATAACTT
162200 C
66 C
162201 ATAAGCCGAGAGTTGAAGCGATGACTCAATTCCAATGTGAGAATTGAAAAGCACCTTAATAACTT
1 ATAAGCCGAGAGTTGAAGCGATGACTCAATTCCAATGTGAGAATTGAAAAGCACCTTAATAACTT
162266 C
66 C
162267 GGAATATCTC
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 66 1.00
ACGTcount: A:0.38, C:0.18, G:0.20, T:0.24
Consensus pattern (66 bp):
ATAAGCCGAGAGTTGAAGCGATGACTCAATTCCAATGTGAGAATTGAAAAGCACCTTAATAACTT
C
Found at i:162248 original size:31 final size:31
Alignment explanation
Indices: 162142--162248 Score: 76
Period size: 31 Copynumber: 3.3 Consensus size: 31
162132 CTAATAAGCC
*
162142 GAGAGTTGAAGCGATGACTCAATTCCAATGT
1 GAGAATTGAAGCGATGACTCAATTCCAATGT
* * * *
162173 GAGAATTGAAAAGC-ACCTTAAT-AACTT-CATAAGCC
1 GAGAATTG--AAGCGA--TGACTCAA-TTCCA-ATG-T
*
162208 GAGAGTTGAAGCGATGACTCAATTCCAATGT
1 GAGAATTGAAGCGATGACTCAATTCCAATGT
162239 GAGAATTGAA
1 GAGAATTGAA
162249 AAGCACCTTA
Statistics
Matches: 55, Mismatches: 11, Indels: 20
0.64 0.13 0.23
Matches are distributed among these distances:
31 16 0.29
32 8 0.15
33 16 0.29
34 8 0.15
35 7 0.13
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.24
Consensus pattern (31 bp):
GAGAATTGAAGCGATGACTCAATTCCAATGT
Found at i:167828 original size:153 final size:155
Alignment explanation
Indices: 167602--167911 Score: 579
Period size: 153 Copynumber: 2.0 Consensus size: 155
167592 AAAAAAGGAG
*
167602 AAAAAACATGAGAAAAAGTGAAAAAACAAAACAAAAACAAAAATACGAAAAAAAATCAAATTCAG
1 AAAAAACATGAGAAAAAGTGAAAAAACAAAACAAAAACAAAAATACGAAAAAAAATAAAATTCAG
*
167667 TTCGAAAGGAAAGTTGTTGTTTAATGGTTTGTC-TTTATCTTG-TGTGCGTAATGTTTGATGAAG
66 TTCCAAAGGAAAGTTGTTGTTTAATGGTTTGTCTTTTATCTTGTTGTGCGTAATGTTTGATGAAG
167730 TTGAACTTCTTAGTTCCTTGCCTTA
131 TTGAACTTCTTAGTTCCTTGCCTTA
*
167755 AAAAAACATGAGAAAAAGTGAAAAAACCAAACAAAAACAAAAATACGAAAAAAAATAAAATTCAG
1 AAAAAACATGAGAAAAAGTGAAAAAACAAAACAAAAACAAAAATACGAAAAAAAATAAAATTCAG
167820 TTCCAAAGGAAAGTTGTTGTTTAATGGTTTGTCTTTTATCTTGTTGTGCGTAATGTTTGATGAAG
66 TTCCAAAGGAAAGTTGTTGTTTAATGGTTTGTCTTTTATCTTGTTGTGCGTAATGTTTGATGAAG
167885 TTGAACTTCTTAGTTCCTTGCCTTA
131 TTGAACTTCTTAGTTCCTTGCCTTA
167910 AA
1 AA
167912 TTTTAACCAT
Statistics
Matches: 152, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
153 95 0.62
154 9 0.06
155 48 0.32
ACGTcount: A:0.42, C:0.11, G:0.16, T:0.30
Consensus pattern (155 bp):
AAAAAACATGAGAAAAAGTGAAAAAACAAAACAAAAACAAAAATACGAAAAAAAATAAAATTCAG
TTCCAAAGGAAAGTTGTTGTTTAATGGTTTGTCTTTTATCTTGTTGTGCGTAATGTTTGATGAAG
TTGAACTTCTTAGTTCCTTGCCTTA
Found at i:171324 original size:16 final size:16
Alignment explanation
Indices: 171294--171324 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
171284 AATATTGAAA
*
171294 CTTGAACTCGAAAAAG
1 CTTGAACTCAAAAAAG
171310 CTTGAACTCAAAAAA
1 CTTGAACTCAAAAAA
171325 AAATTAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.19, G:0.13, T:0.19
Consensus pattern (16 bp):
CTTGAACTCAAAAAAG
Found at i:172171 original size:27 final size:27
Alignment explanation
Indices: 172141--172225 Score: 75
Period size: 29 Copynumber: 3.0 Consensus size: 27
172131 AATATATTAT
172141 AATAAAATATTTAAAATTATTTAATAGA
1 AATAAAATATTTAAAATTATTTAATA-A
** *
172169 ATATAAAATAAATAATATATTATTAAAT-A
1 A-ATAAAATATTTAA-A-ATTATTTAATAA
172198 AATAAATAATATTT-AAATTATTTAATAA
1 AAT-AA-AATATTTAAAATTATTTAATAA
172226 TTACTTCAAT
Statistics
Matches: 45, Mismatches: 6, Indels: 12
0.71 0.10 0.19
Matches are distributed among these distances:
27 9 0.20
28 5 0.11
29 16 0.36
30 6 0.13
31 9 0.20
ACGTcount: A:0.59, C:0.00, G:0.01, T:0.40
Consensus pattern (27 bp):
AATAAAATATTTAAAATTATTTAATAA
Found at i:172196 original size:19 final size:19
Alignment explanation
Indices: 172174--172215 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
172164 ATAGAATATA
*
172174 AAATAAATAATATATTA-TT
1 AAATAAATAA-ATAATATTT
172193 AAATAAATAAATAATATTT
1 AAATAAATAAATAATATTT
172212 AAAT
1 AAAT
172216 TATTTAATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (19 bp):
AAATAAATAAATAATATTT
Found at i:174238 original size:2 final size:2
Alignment explanation
Indices: 174231--174262 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
174221 TATTTTTCAA
174231 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
174263 GACAAGAGCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:175151 original size:66 final size:66
Alignment explanation
Indices: 175051--175176 Score: 164
Period size: 66 Copynumber: 1.9 Consensus size: 66
175041 CGGTATTAAC
* * *
175051 TGATTACTTTCGAATTTATTCAGATACACATTAATGAC-TCTACTTTTCGGGATATATTTTATTA
1 TGATTACTTCCGAATTTATTCAGATACACATTAATGACAT-TACTTTTCAGAATATATTTTATTA
175115 TT
65 TT
* * ***
175117 TGATTACTTCCGAATTTATTCGGATTCTTGTTAATGACATTACTTTTCAGAATATATTTT
1 TGATTACTTCCGAATTTATTCAGATACACATTAATGACATTACTTTTCAGAATATATTTT
175177 TTAATTCTTT
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
66 50 0.98
67 1 0.02
ACGTcount: A:0.28, C:0.13, G:0.11, T:0.48
Consensus pattern (66 bp):
TGATTACTTCCGAATTTATTCAGATACACATTAATGACATTACTTTTCAGAATATATTTTATTAT
T
Found at i:175986 original size:22 final size:23
Alignment explanation
Indices: 175947--175991 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
175937 GAATGATAAC
*
175947 AATGGCGGATCTAGAAATTTAAT
1 AATGGCGGATCTAAAAATTTAAT
*
175970 AATGG-GGGTCTAAAAATTTAAT
1 AATGGCGGATCTAAAAATTTAAT
175992 TTTCTTTTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.40, C:0.07, G:0.22, T:0.31
Consensus pattern (23 bp):
AATGGCGGATCTAAAAATTTAAT
Found at i:176969 original size:23 final size:23
Alignment explanation
Indices: 176937--176994 Score: 82
Period size: 23 Copynumber: 2.5 Consensus size: 23
176927 TAAACTACCA
176937 AAAGGAAGAGAAAAATGTGACA-T
1 AAAGGAAGAGAAAAATGTG-CATT
* *
176960 AAAGGCAGAGATAAATGTGCATT
1 AAAGGAAGAGAAAAATGTGCATT
176983 AAAGGAAGAGAA
1 AAAGGAAGAGAA
176995 CATGTCACAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
22 2 0.07
23 28 0.93
ACGTcount: A:0.53, C:0.05, G:0.28, T:0.14
Consensus pattern (23 bp):
AAAGGAAGAGAAAAATGTGCATT
Found at i:180342 original size:32 final size:32
Alignment explanation
Indices: 180306--180375 Score: 86
Period size: 32 Copynumber: 2.2 Consensus size: 32
180296 TCGTATTAAG
* *
180306 ATAATGAATAGCAGTTTCAGGGTCGCATTCAA
1 ATAATGAATAACAGTATCAGGGTCGCATTCAA
* * * *
180338 ATAATGCATAATAGTATCAGTGTCGCATTTAA
1 ATAATGAATAACAGTATCAGGGTCGCATTCAA
180370 ATAATG
1 ATAATG
180376 TGCACTAGTG
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (32 bp):
ATAATGAATAACAGTATCAGGGTCGCATTCAA
Found at i:183538 original size:19 final size:19
Alignment explanation
Indices: 183510--183546 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
183500 TCCCTCTATC
183510 TCTTGAATCTGATTCACTT
1 TCTTGAATCTGATTCACTT
* *
183529 TCTTGGATCTGTTTCACT
1 TCTTGAATCTGATTCACT
183547 CTCTGAAACT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.16, C:0.22, G:0.14, T:0.49
Consensus pattern (19 bp):
TCTTGAATCTGATTCACTT
Found at i:185579 original size:20 final size:23
Alignment explanation
Indices: 185541--185583 Score: 65
Period size: 20 Copynumber: 2.0 Consensus size: 23
185531 ATCGGAAAAA
185541 CTAAGGAGGAAAAAGAATATTTT
1 CTAAGGAGGAAAAAGAATATTTT
185564 CTAAGGA-G-AAAA-AATATTTT
1 CTAAGGAGGAAAAAGAATATTTT
185584 TGAAGAGAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 8 0.40
21 4 0.20
22 1 0.05
23 7 0.35
ACGTcount: A:0.49, C:0.05, G:0.19, T:0.28
Consensus pattern (23 bp):
CTAAGGAGGAAAAAGAATATTTT
Found at i:185804 original size:7 final size:7
Alignment explanation
Indices: 185792--185826 Score: 52
Period size: 7 Copynumber: 5.0 Consensus size: 7
185782 ATAAATTAAA
185792 AAAATAT
1 AAAATAT
185799 AAAATAT
1 AAAATAT
* *
185806 TAAATTT
1 AAAATAT
185813 AAAATAT
1 AAAATAT
185820 AAAATAT
1 AAAATAT
185827 TTTACCATTC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (7 bp):
AAAATAT
Found at i:187073 original size:85 final size:85
Alignment explanation
Indices: 186904--187100 Score: 226
Period size: 85 Copynumber: 2.3 Consensus size: 85
186894 AAACTCAAGT
* *
186904 TTTAGGATAATATTTTAAATATTA---TATATTATATTTGTTTTAGGTATTTTAGTTTAAATAGA
1 TTTAGGATATTATTTTAAATATTATTTTATATTATATTTGTTTTAGGTATTTCAGTTTAAATAGA
*
186966 TGTTAGTATTTCAATTGGGA
66 TGTTAGTATTTCAATTAGGA
* *
186986 TTTAGGATATTATTTTAAATATTATTTTATTTTATCTTTGTTTTAGGTATTTCAGTTTAAATAG-
1 TTTAGGATATTATTTTAAATATTATTTTATATTATATTTGTTTTAGGTATTTCAGTTTAAATAGA
* * * *
187050 TTTTAAGTGTTTTAATTATGA
66 TGTT-AGTATTTCAATTAGGA
*
187071 TTTAAGG-TATTATATTAGAA-ATTATCTTTA
1 TTT-AGGATATTATTTTA-AATATTAT-TTTA
187101 GCTTGTTTTT
Statistics
Matches: 98, Mismatches: 10, Indels: 10
0.83 0.08 0.08
Matches are distributed among these distances:
82 23 0.23
84 3 0.03
85 63 0.64
86 9 0.09
ACGTcount: A:0.31, C:0.02, G:0.13, T:0.54
Consensus pattern (85 bp):
TTTAGGATATTATTTTAAATATTATTTTATATTATATTTGTTTTAGGTATTTCAGTTTAAATAGA
TGTTAGTATTTCAATTAGGA
Found at i:187810 original size:12 final size:12
Alignment explanation
Indices: 187793--187817 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
187783 CTAATCAATT
187793 TTATTTATTTAA
1 TTATTTATTTAA
187805 TTATTTATTTAA
1 TTATTTATTTAA
187817 T
1 T
187818 CTTTATCTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
TTATTTATTTAA
Found at i:187926 original size:15 final size:16
Alignment explanation
Indices: 187906--187942 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
187896 ATTTTTCCCT
187906 TTTTATAATTA-TTTA
1 TTTTATAATTATTTTA
*
187921 TTTTAT-TTTATTTTA
1 TTTTATAATTATTTTA
187936 TTTTATA
1 TTTTATA
187943 TTCTCATCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
14 3 0.16
15 16 0.84
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (16 bp):
TTTTATAATTATTTTA
Found at i:187927 original size:5 final size:5
Alignment explanation
Indices: 187917--187941 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
187907 TTTATAATTA
187917 TTTAT TTTAT TTTAT TTTAT TTTAT
1 TTTAT TTTAT TTTAT TTTAT TTTAT
187942 ATTCTCATCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTAT
Found at i:197991 original size:20 final size:19
Alignment explanation
Indices: 197966--198004 Score: 69
Period size: 20 Copynumber: 2.0 Consensus size: 19
197956 GTCAGTCAGG
197966 GGTTATCGATACCAATAGGT
1 GGTTATCGATACCAA-AGGT
197986 GGTTATCGATACCAAAGGT
1 GGTTATCGATACCAAAGGT
198005 TTAGTATCGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (19 bp):
GGTTATCGATACCAAAGGT
Found at i:200305 original size:21 final size:22
Alignment explanation
Indices: 200281--200321 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
200271 ATTTTGATTG
*
200281 TGATTCAAA-TGTATGAAATCT
1 TGATTCAAATTATATGAAATCT
*
200302 TGATTTAAATTATATGAAAT
1 TGATTCAAATTATATGAAAT
200322 TTATATACAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 8 0.47
22 9 0.53
ACGTcount: A:0.41, C:0.05, G:0.12, T:0.41
Consensus pattern (22 bp):
TGATTCAAATTATATGAAATCT
Found at i:206734 original size:17 final size:19
Alignment explanation
Indices: 206700--206737 Score: 62
Period size: 17 Copynumber: 2.1 Consensus size: 19
206690 TAAAATTTTC
206700 TTAAAATTCTTAAACTAAA
1 TTAAAATTCTTAAACTAAA
206719 TTAAAATT-TT-AACTAAA
1 TTAAAATTCTTAAACTAAA
206736 TT
1 TT
206738 CAAGGGCCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 9 0.47
18 2 0.11
19 8 0.42
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (19 bp):
TTAAAATTCTTAAACTAAA
Found at i:208136 original size:39 final size:39
Alignment explanation
Indices: 208075--208159 Score: 116
Period size: 39 Copynumber: 2.2 Consensus size: 39
208065 TGTAATACCT
* *
208075 TACCTCAGGCTCTTCTACTTTGTGCTCAAGGTAAGTCCA
1 TACCGCAGGCTCCTCTACTTTGTGCTCAAGGTAAGTCCA
* * * *
208114 TACCGCAGGCTCCTCTAGTTTGTGCTCAGGGTAAGTTCT
1 TACCGCAGGCTCCTCTACTTTGTGCTCAAGGTAAGTCCA
208153 TACCGCA
1 TACCGCA
208160 TGTCCTTATG
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.19, C:0.28, G:0.21, T:0.32
Consensus pattern (39 bp):
TACCGCAGGCTCCTCTACTTTGTGCTCAAGGTAAGTCCA
Found at i:208545 original size:2 final size:2
Alignment explanation
Indices: 208538--208562 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
208528 CAATATTTTG
208538 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
208563 GTTTTTTAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:215003 original size:20 final size:20
Alignment explanation
Indices: 214962--215004 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
214952 CCAATACGCA
* *
214962 AGTATTGATACTCAGGGTTC
1 AGTATCGATACTAAGGGTTC
214982 AGTATCGATACTAAAGGG-TC
1 AGTATCGATACT-AAGGGTTC
215002 AGT
1 AGT
215005 GTCAGTACCC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 16 0.80
21 4 0.20
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (20 bp):
AGTATCGATACTAAGGGTTC
Found at i:221259 original size:19 final size:19
Alignment explanation
Indices: 221231--221274 Score: 54
Period size: 22 Copynumber: 2.2 Consensus size: 19
221221 TAGTGTGATC
221231 GCAATTGGAT-ATGTCGTG
1 GCAATTGGATAATGTCGTG
221249 GCAAGTTGGATGAAATGTCGTG
1 GCAA-TTGGAT--AATGTCGTG
221271 GCAA
1 GCAA
221275 ATTCAATTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
18 4 0.18
19 6 0.27
22 12 0.55
ACGTcount: A:0.27, C:0.11, G:0.34, T:0.27
Consensus pattern (19 bp):
GCAATTGGATAATGTCGTG
Found at i:222549 original size:90 final size:87
Alignment explanation
Indices: 222399--222569 Score: 279
Period size: 90 Copynumber: 1.9 Consensus size: 87
222389 ACACACCCTT
222399 TTATAGCCAAGTTACCCTAATCATATAGGGTTTATTATTTCAAATTAATTAAATCTATATTTAAT
1 TTATAGCCAAGTTACCCTAATCATATAGGGTTTATTATTTCAAATTAATTAAATCTATATTTAAT
* *
222464 TAATTGGAATTTAATAATCCTC
66 TAATTGAAATTAAATAATCCTC
* *
222486 TTATATCCAAGTTACCCTAATCATATTAGGGATTTTATTATTTCAAATTAATTAAATTTATATTT
1 TTATAGCCAAGTTACCCTAATCATA-TAGGG--TTTATTATTTCAAATTAATTAAATCTATATTT
222551 AATTAATTGAAATTAAATA
63 AATTAATTGAAATTAAATA
222570 TTTGGGGTTA
Statistics
Matches: 77, Mismatches: 4, Indels: 3
0.92 0.05 0.04
Matches are distributed among these distances:
87 24 0.31
88 5 0.06
90 48 0.62
ACGTcount: A:0.39, C:0.11, G:0.07, T:0.44
Consensus pattern (87 bp):
TTATAGCCAAGTTACCCTAATCATATAGGGTTTATTATTTCAAATTAATTAAATCTATATTTAAT
TAATTGAAATTAAATAATCCTC
Done.