Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009281.1 Hibiscus syriacus cultivar Beakdansim tig00112968_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 390849
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 2 of 2
Found at i:256543 original size:35 final size:34
Alignment explanation
Indices: 256482--256558 Score: 109
Period size: 35 Copynumber: 2.2 Consensus size: 34
256472 TTTTGCAACA
**
256482 TCTTGTTTGAACTTTCTTTTTTACTTTCTCATATT
1 TCTT-TTTGAACTTTCTTTTGAACTTTCTCATATT
256517 TCTTTTTGTAACTTTCTTTTGAACTTTCTCATATT
1 TCTTTTTG-AACTTTCTTTTGAACTTTCTCATATT
*
256552 TCATTTT
1 TCTTTTT
256559 ATAAGGATAT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
34 4 0.11
35 34 0.89
ACGTcount: A:0.16, C:0.17, G:0.05, T:0.62
Consensus pattern (34 bp):
TCTTTTTGAACTTTCTTTTGAACTTTCTCATATT
Found at i:257198 original size:99 final size:99
Alignment explanation
Indices: 257025--257216 Score: 294
Period size: 99 Copynumber: 1.9 Consensus size: 99
257015 TTATATATAT
* * * ** *
257025 AATAAAGCTTGAATTGTCCCTCTAAAGCAATTGGTTAAATGTCCCGGCTTTATAGATAAGATTAA
1 AATAAAGCTTGAACTATCCCTCTAAAGCAATTGGTTAAATGCCCCAACTTTATAGATAAGAGTAA
257090 GCTAACCTGATAAAGGTGATTATAATATCTATGC
66 GCTAACCTGATAAAGGTGATTATAATATCTATGC
* * *
257124 AATAAAGCTTGAGCTATCCCTCTAAAGCAATTGGTTAAATGCCCCAACTTTATGGATAAGAGTCA
1 AATAAAGCTTGAACTATCCCTCTAAAGCAATTGGTTAAATGCCCCAACTTTATAGATAAGAGTAA
*
257189 GCTAGCCTGATAAAGGTGATTATAATAT
66 GCTAACCTGATAAAGGTGATTATAATAT
257217 TGAGTTGTCC
Statistics
Matches: 83, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
99 83 1.00
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.31
Consensus pattern (99 bp):
AATAAAGCTTGAACTATCCCTCTAAAGCAATTGGTTAAATGCCCCAACTTTATAGATAAGAGTAA
GCTAACCTGATAAAGGTGATTATAATATCTATGC
Found at i:258509 original size:156 final size:154
Alignment explanation
Indices: 258209--258520 Score: 392
Period size: 156 Copynumber: 2.0 Consensus size: 154
258199 GATGGTGGTT
*
258209 GCTCAACTTCACAACGAAGCGTCTGTCAACAAACAACTTTCCAGTTTCATTCAGGAGTCAATTTC
1 GCTCAACTTCACAACGAAGCGTCTGTCAACAAACAACTTTCCAGTTTCATTCAGGAGACAATTTC
* * ** *
258274 AACTTCACAGAGAAGTATATTGGACTCAAAACAACGCGACTTACACAAGTTTGGATTTCAACTTC
66 AACTTCAAAGAGAAGGATATTGGACTCAAAACAACAAGACTTACACAAGATTGGATTTCAACTTC
*
258339 ACAACAAAGAATATCCAATTCAAA
131 ACAACAAAGAATATCCAACTCAAA
* *
258363 GCTCAACTTCACAGCGAAGGAGCGTCTGTCAACAAACAACTTTCCAGTTTCATTCA-GAGACGAT
1 GCTCAACTTCACAACG-A--AGCGTCTGTCAACAAACAACTTTCCAGTTTCATTCAGGAGACAAT
* * ** * * * * * *
258427 TTTAACTTCAAAGCGAAGGATATTGGACTTGAAGCGACAATATTTACTCGAGATTGGATTTCAAC
63 TTCAACTTCAAAGAGAAGGATATTGGACTCAAAACAACAAGACTTACACAAGATTGGATTTCAAC
* * *
258492 TTTACAACGAAGGATATCCAACTCAAA
128 TTCACAACAAAGAATATCCAACTCAAA
258519 GC
1 GC
258521 CAATTTGGTG
Statistics
Matches: 133, Mismatches: 22, Indels: 4
0.84 0.14 0.03
Matches are distributed among these distances:
154 15 0.11
155 1 0.01
156 81 0.61
157 36 0.27
ACGTcount: A:0.36, C:0.23, G:0.16, T:0.26
Consensus pattern (154 bp):
GCTCAACTTCACAACGAAGCGTCTGTCAACAAACAACTTTCCAGTTTCATTCAGGAGACAATTTC
AACTTCAAAGAGAAGGATATTGGACTCAAAACAACAAGACTTACACAAGATTGGATTTCAACTTC
ACAACAAAGAATATCCAACTCAAA
Found at i:258574 original size:65 final size:64
Alignment explanation
Indices: 258470--258645 Score: 225
Period size: 65 Copynumber: 2.8 Consensus size: 64
258460 GCGACAATAT
* *
258470 TTACTCGAGATTGGATTTCAACTTTACAACGAAGGATATCCAACTCAAAGCCAATTTGGTGAAAC
1 TTACTC-AGATTGGATTTCAACTTCACAAAGAAGGATATCCAACTCAAAGCCAATTTGGTGAAAC
* * * *
258535 TTACTCAAGATTGGATTTTAACTTCATAAAGAAGTATATCCAACTCAAAACCAATTTGGTGAAAC
1 TTACTC-AGATTGGATTTCAACTTCACAAAGAAGGATATCCAACTCAAAGCCAATTTGGTGAAAC
* * *
258600 -AACT---ATTGGATTTCAACTTCACAATGAAGGATATCCAATTCAAAGC
1 TTACTCAGATTGGATTTCAACTTCACAAAGAAGGATATCCAACTCAAAGC
258646 TTAACTTCAC
Statistics
Matches: 97, Mismatches: 14, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
60 36 0.37
64 3 0.03
65 58 0.60
ACGTcount: A:0.38, C:0.19, G:0.14, T:0.29
Consensus pattern (64 bp):
TTACTCAGATTGGATTTCAACTTCACAAAGAAGGATATCCAACTCAAAGCCAATTTGGTGAAAC
Found at i:258761 original size:124 final size:124
Alignment explanation
Indices: 258604--258828 Score: 342
Period size: 124 Copynumber: 1.8 Consensus size: 124
258594 TGAAACAACT
* * * *
258604 ATTGGATTTCAACTTCACAATGAAGGATATCCAATTCAAAGCTTAACTTCACAATGAAGGAGCCA
1 ATTGGATTTCAAATTCACAACGAAAGATATCCAATTCAAAGCTCAACTTCACAATGAAGGAGCCA
* * * *
258669 TCCATGATTTCAATTTCACTATGAAAGATATCGTGCCCACAAGCAGCATCCATCTCTAG
66 TCCACGATTTCAACTTCACGACGAAAGATATCGTGCCCACAAGCAGCATCCATCTCTAG
* **
258728 ATTGGATTTCAAATTCACAACGAAAGATTTCCAATTCAAAGCTCAACTTCACAATGAATTAGCCA
1 ATTGGATTTCAAATTCACAACGAAAGATATCCAATTCAAAGCTCAACTTCACAATGAAGGAGCCA
*
258793 TCCACGATTTCAACTTCACGGCGAAAGATATCGTGC
66 TCCACGATTTCAACTTCACGACGAAAGATATCGTGC
258829 TTGAGTTGAT
Statistics
Matches: 89, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
124 89 1.00
ACGTcount: A:0.35, C:0.24, G:0.14, T:0.27
Consensus pattern (124 bp):
ATTGGATTTCAAATTCACAACGAAAGATATCCAATTCAAAGCTCAACTTCACAATGAAGGAGCCA
TCCACGATTTCAACTTCACGACGAAAGATATCGTGCCCACAAGCAGCATCCATCTCTAG
Found at i:259055 original size:85 final size:85
Alignment explanation
Indices: 258902--259480 Score: 701
Period size: 85 Copynumber: 6.8 Consensus size: 85
258892 AGCTTATTAT
* * * *
258902 AGCATAGTTCAAGGCGAGAAGGGTTATCTGTCAACAAAGATCTTTGAGTTCGATTACATTCAGCT
1 AGCATAGCTCAAGGCGAGAAGGGTTATCTGCCAACAAAGACCTTCGAGTTCGATTACATTCAGCT
*
258967 CAAATGCATATCAAATTTAC
66 CAAAGGCATATCAAATTTAC
* * *
258987 AGTATAGCTCAAGGCGAGAAGGGTTATCTGCCAACCAAGACCTTCGAGTTCGATTACATTCAGTT
1 AGCATAGCTCAAGGCGAGAAGGGTTATCTGCCAACAAAGACCTTCGAGTTCGATTACATTCAGCT
*
259052 CAAAGGCATATCAACCTATTAC
66 CAAAGGCATATCAA-AT-TTAC
* ** *
259074 AGTATAGCTCAAGGCGAGAAGGGTTATCTATCAACAAAGACCTTCGAGTTTGATTACATTCAGCT
1 AGCATAGCTCAAGGCGAGAAGGGTTATCTGCCAACAAAGACCTTCGAGTTCGATTACATTCAGCT
* *
259139 CAAATGCATATCAAATTTGC
66 CAAAGGCATATCAAATTTAC
* ** * * * *
259159 AGCATATCTCAAGGCGAGAAGGCCTATATGCCAACCAAGACCTTCGAGTTCGATTATATTCAGCA
1 AGCATAGCTCAAGGCGAGAAGGGTTATCTGCCAACAAAGACCTTCGAGTTCGATTACATTCAGCT
* *
259224 CAAAGGCACATCAAACTTAC
66 CAAAGGCATATCAAATTTAC
* * * *
259244 AGTATAACTCAAGGCGAGAAGGGTTATCTGTCAGCAAAGACCTTCGAGTTCGATTACATTCAGCT
1 AGCATAGCTCAAGGCGAGAAGGGTTATCTGCCAACAAAGACCTTCGAGTTCGATTACATTCAGCT
*
259309 CAAAGGCACATCAAATTTAC
66 CAAAGGCATATCAAATTTAC
* * * *
259329 AGCATAGCTCAAGGCGAGAAGTGTTATCTGCCAAAAAATACCTTCGAGTTCGATTCCATTCAGCT
1 AGCATAGCTCAAGGCGAGAAGGGTTATCTGCCAACAAAGACCTTCGAGTTCGATTACATTCAGCT
* * *
259394 CAAGGGCATGTCAGATTTAC
66 CAAAGGCATATCAAATTTAC
* * * ** * * ** *
259414 AGCATAGCTTAAGTCGTGAAAAGCTATCTGTCAAC-AAGAAATTGTCGAGTTCGATTCCATTCAG
1 AGCATAGCTCAAGGCGAGAAGGGTTATCTGCCAACAAAG-ACCT-TCGAGTTCGATTACATTCAG
259478 CTC
64 CTC
259481 GATGACACAT
Statistics
Matches: 424, Mismatches: 66, Indels: 7
0.85 0.13 0.01
Matches are distributed among these distances:
84 2 0.00
85 320 0.75
86 25 0.06
87 77 0.18
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.26
Consensus pattern (85 bp):
AGCATAGCTCAAGGCGAGAAGGGTTATCTGCCAACAAAGACCTTCGAGTTCGATTACATTCAGCT
CAAAGGCATATCAAATTTAC
Found at i:261810 original size:21 final size:21
Alignment explanation
Indices: 261784--261832 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
261774 TTATCAGTAT
261784 TTATTTCATTTATTT-CGTTTA
1 TTATTTCATTTATTTAC-TTTA
* *
261805 TTATTTTATTTTTTTAACTTTA
1 TTATTTCATTTATTT-ACTTTA
261827 TTATTT
1 TTATTT
261833 TTTCTTTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 13 0.54
22 10 0.42
23 1 0.04
ACGTcount: A:0.20, C:0.06, G:0.02, T:0.71
Consensus pattern (21 bp):
TTATTTCATTTATTTACTTTA
Found at i:261826 original size:22 final size:23
Alignment explanation
Indices: 261801--261843 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
261791 ATTTATTTCG
261801 TTTATTATTTTAT-TTTTTTAAC
1 TTTATTATTTTATCTTTTTTAAC
*
261823 TTTATTATTTTTTCTTTTTTA
1 TTTATTATTTTATCTTTTTTA
261844 CTAATTTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.19, C:0.05, G:0.00, T:0.77
Consensus pattern (23 bp):
TTTATTATTTTATCTTTTTTAAC
Found at i:263547 original size:35 final size:35
Alignment explanation
Indices: 263481--263548 Score: 93
Period size: 35 Copynumber: 1.9 Consensus size: 35
263471 TTCTTGAGAG
**
263481 TTGTTTTCTCCTTTTTTATCAAGAGAGAATTGTTA
1 TTGTTTTCTCCTTTTAGATCAAGAGAGAATTGTTA
*
263516 TTGTTTTCTCCTTGTTAGATCGAGAGA-AATTGT
1 TTGTTTTCTCCTT-TTAGATCAAGAGAGAATTGT
263549 AATTCCTATT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
35 19 0.66
36 10 0.34
ACGTcount: A:0.22, C:0.12, G:0.18, T:0.49
Consensus pattern (35 bp):
TTGTTTTCTCCTTTTAGATCAAGAGAGAATTGTTA
Found at i:267394 original size:17 final size:18
Alignment explanation
Indices: 267372--267407 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
267362 GTGCACTAAG
267372 AGTGCA-TCGATGTATCA
1 AGTGCATTCGATGTATCA
*
267389 AGTGCATTCGATGTTTCA
1 AGTGCATTCGATGTATCA
267407 A
1 A
267408 AATAGCCAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33
Consensus pattern (18 bp):
AGTGCATTCGATGTATCA
Found at i:267511 original size:66 final size:64
Alignment explanation
Indices: 267373--267529 Score: 185
Period size: 66 Copynumber: 2.4 Consensus size: 64
267363 TGCACTAAGA
* * * * *
267373 GTGCATCGATGTATCAAGTGCATTCGATGTTTCAAAATAGCCAGAGTGCATCGATGCATTACTG
1 GTGCATCGATGCATCAAATGCATTCGAAGTTTCAAAATACCCACAGTGCATCGATGCATTACTG
267437 GTGCATCGATGCATCAAATGCATTCGAAGTATTCATTAAA-ACCCACAGTGCATCGATGCATGGT
1 GTGCATCGATGCATCAAATGCATTCGAAGT-TTCA--AAATACCCACAGTGCATCGATGCAT--T
267501 A-T-
61 ACTG
**
267503 GTGCATCGATGCATGTAATGCATTCGA
1 GTGCATCGATGCATCAAATGCATTCGA
267530 TGTTCAATTT
Statistics
Matches: 81, Mismatches: 7, Indels: 8
0.84 0.07 0.08
Matches are distributed among these distances:
64 27 0.33
65 4 0.05
66 44 0.54
67 4 0.05
68 2 0.02
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (64 bp):
GTGCATCGATGCATCAAATGCATTCGAAGTTTCAAAATACCCACAGTGCATCGATGCATTACTG
Found at i:267751 original size:12 final size:13
Alignment explanation
Indices: 267720--267752 Score: 50
Period size: 12 Copynumber: 2.5 Consensus size: 13
267710 TAAGATTTTC
267720 TTTGACAATCAAGT
1 TTTGA-AATCAAGT
267734 TTTGAAATCAAG-
1 TTTGAAATCAAGT
267746 TTTGAAA
1 TTTGAAA
267753 AATTACTCCC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.37
13 7 0.37
14 5 0.26
ACGTcount: A:0.39, C:0.09, G:0.15, T:0.36
Consensus pattern (13 bp):
TTTGAAATCAAGT
Found at i:267886 original size:2 final size:2
Alignment explanation
Indices: 267879--267975 Score: 152
Period size: 2 Copynumber: 51.5 Consensus size: 2
267869 GCCAATTGAA
267879 AT AT AT AT AT AT AT -T AT AT AT AT A- AT AT AT AT AT AT AT -T
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
267918 A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
267958 AT AT AT AT AT -T AT AT AT A
1 AT AT AT AT AT AT AT AT AT A
267976 GCTTAAGCTG
Statistics
Matches: 89, Mismatches: 0, Indels: 12
0.88 0.00 0.12
Matches are distributed among these distances:
1 6 0.07
2 83 0.93
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:269827 original size:23 final size:22
Alignment explanation
Indices: 269797--269878 Score: 85
Period size: 23 Copynumber: 3.6 Consensus size: 22
269787 GCATGGCCTT
269797 GTGCATCGATGCACATTCAAGG
1 GTGCATCGATGCACATTCAAGG
* * *
269819 CGTGCATCGGTGCACCTTC-ATG
1 -GTGCATCGATGCACATTCAAGG
*
269841 GTGTATCGATGCACATTCAAAGG
1 GTGCATCGATGCACATTC-AAGG
*
269864 GATACATCGATGCAC
1 G-TGCATCGATGCAC
269879 TATTAAGTGT
Statistics
Matches: 47, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
21 15 0.32
22 2 0.04
23 19 0.40
24 11 0.23
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (22 bp):
GTGCATCGATGCACATTCAAGG
Found at i:269853 original size:21 final size:22
Alignment explanation
Indices: 269797--269859 Score: 74
Period size: 21 Copynumber: 2.9 Consensus size: 22
269787 GCATGGCCTT
269797 GTGCATCGATGCACATTCAAGGC
1 GTGCATCGATGCACATTC-AGGC
* * *
269820 GTGCATCGGTGCACCTTCATG-
1 GTGCATCGATGCACATTCAGGC
*
269841 GTGTATCGATGCACATTCA
1 GTGCATCGATGCACATTCA
269860 AAGGGATACA
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
21 16 0.47
22 2 0.06
23 16 0.47
ACGTcount: A:0.22, C:0.25, G:0.25, T:0.27
Consensus pattern (22 bp):
GTGCATCGATGCACATTCAGGC
Found at i:273089 original size:155 final size:155
Alignment explanation
Indices: 272807--273117 Score: 613
Period size: 155 Copynumber: 2.0 Consensus size: 155
272797 TAAATGCACC
272807 ATGTAAATGTTTCCTATTCTATAACCAACAAGCATAATCCGATTAGATGCAATGTCAATGACTTT
1 ATGTAAATGTTTCCTATTCTATAACCAACAAGCATAATCCGATTAGATGCAATGTCAATGACTTT
272872 ACAACCATTAGTTTCAAATATGACATTGAATCTCTTATCACATAATTGACTAATACTCAAAAGAT
66 ACAACCATTAGTTTCAAATATGACATTGAATCTCTTATCACATAATTGACTAATACTCAAAAGAT
272937 TATGCTTTAAACCATTCACATATAA
131 TATGCTTTAAACCATTCACATATAA
272962 ATGTAAATGTTTCCTATTCTATAACCAACAAGCATAATCCGATTAGATGCAATGTCAATGACTTT
1 ATGTAAATGTTTCCTATTCTATAACCAACAAGCATAATCCGATTAGATGCAATGTCAATGACTTT
273027 ACAACCATTAGTTTCAAATATGACATTGAATCTCTTATCACATAATTGACTAATACTCAAAAGAT
66 ACAACCATTAGTTTCAAATATGACATTGAATCTCTTATCACATAATTGACTAATACTCAAAAGAT
*
273092 TATGCTTTAACCCATTCACATATAA
131 TATGCTTTAAACCATTCACATATAA
273117 A
1 A
273118 ACATTTTTAA
Statistics
Matches: 155, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
155 155 1.00
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.33
Consensus pattern (155 bp):
ATGTAAATGTTTCCTATTCTATAACCAACAAGCATAATCCGATTAGATGCAATGTCAATGACTTT
ACAACCATTAGTTTCAAATATGACATTGAATCTCTTATCACATAATTGACTAATACTCAAAAGAT
TATGCTTTAAACCATTCACATATAA
Found at i:276769 original size:203 final size:199
Alignment explanation
Indices: 276320--276780 Score: 576
Period size: 201 Copynumber: 2.3 Consensus size: 199
276310 CCAAGCTATT
* * * *
276320 TAAAAAATAGTTGTATATCATATTAGTAGTTTCCATAGCCTTGGTTTTTAAGTAGAATCCATTGG
1 TAAAAAATAGTTGTATATCATATTAGTAGTTACCATAGCCTTGGTTTTCAAATAGAATCCATTGA
*
276385 CTGGTCTTATTAATAAAATGAGTGTTGTTTTCTTTAGAGGATCCGGGTTTGAGCAACTATGTCTA
66 CTGGTCTTATTAATAAAATGAGTGTTGTTTTCTTTAGAGGATCCAGGTTTGAGCAACTATGTCTA
* *
276450 TAGGGTGTGTGTTGTCAATGACTCAAAAAGATTATGAACTGATACTACCTTATAAACTCTCTAGA
131 TAGGGTGTGTGTTGTCAATGACTCAAAAAAATTATGAACTGATACTACCTTATAAACACTCTAGA
*
276515 CAAT
196 CAAC
276519 TAAAAAGAATAGTTGTATATCATATTAGTAGTTACCATAGCCTTGGTTTTCAAATAGAATCCATT
1 T-AAAA-AATAGTTGTATATCATATTAGTAGTTACCATAGCCTTGGTTTTCAAATAGAATCCATT
* * *
276584 TACTGGT-TTCATTAATAAAAATGAGTGTT-TTTT-TTCCTAGATGATCCAGGTTTGAGCATCTA
64 GACTGGTCTT-ATTAAT-AAAATGAGTGTTGTTTTCTT--TAGAGGATCCAGGTTTGAGCAACTA
* * * * * *
276646 TGTTTGTATGTTGTTGTTTTGTTGTTAATGACT-AAGAAAAATTATGAACAT-ATACTACCTTGT
125 TGTCTATA-G--GGTG-TGTGTTGTCAATGACTCAA-AAAAATTATGAAC-TGATACTACCTTAT
*
276709 -AACGACTCTAGACTAC
184 AAAC-ACTCTAGACAAC
* *
276725 TAAAAAA-AGTTGTATATCGTATTAGTAGTTACCATAGCCTTGGTTTTCGAATAGAA
1 TAAAAAATAGTTGTATATCATATTAGTAGTTACCATAGCCTTGGTTTTCAAATAGAA
276781 GGAACCAGTG
Statistics
Matches: 229, Mismatches: 20, Indels: 22
0.85 0.07 0.08
Matches are distributed among these distances:
199 1 0.00
200 8 0.03
201 70 0.31
202 40 0.17
203 48 0.21
204 2 0.01
205 12 0.05
206 47 0.21
207 1 0.00
ACGTcount: A:0.32, C:0.13, G:0.18, T:0.38
Consensus pattern (199 bp):
TAAAAAATAGTTGTATATCATATTAGTAGTTACCATAGCCTTGGTTTTCAAATAGAATCCATTGA
CTGGTCTTATTAATAAAATGAGTGTTGTTTTCTTTAGAGGATCCAGGTTTGAGCAACTATGTCTA
TAGGGTGTGTGTTGTCAATGACTCAAAAAAATTATGAACTGATACTACCTTATAAACACTCTAGA
CAAC
Found at i:281151 original size:18 final size:17
Alignment explanation
Indices: 281124--281157 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
281114 ATATTTATAT
281124 AATATATATATAATTTTG
1 AATATATATAT-ATTTTG
*
281142 AATATGTATATATTTT
1 AATATATATATATTTT
281158 CTATAATTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.53
Consensus pattern (17 bp):
AATATATATATATTTTG
Found at i:286629 original size:5 final size:5
Alignment explanation
Indices: 286621--286674 Score: 51
Period size: 5 Copynumber: 10.6 Consensus size: 5
286611 GAAAAAACAA
286621 AAAAT AAAAT -AAAT AAAA- ACGAAA- AAAAT AAAAT AAAAT AAATAAT
1 AAAAT AAAAT AAAAT AAAAT A--AAAT AAAAT AAAAT AAAAT -AA-AAT
286667 AAAAT AAA
1 AAAAT AAA
286675 TATATATTAT
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
4 8 0.19
5 24 0.56
6 8 0.19
7 3 0.07
ACGTcount: A:0.80, C:0.02, G:0.02, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:286667 original size:12 final size:12
Alignment explanation
Indices: 286652--286676 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
286642 AAAAAAATAA
286652 AATAAAATAAAT
1 AATAAAATAAAT
286664 AATAAAATAAAT
1 AATAAAATAAAT
286676 A
1 A
286677 TATATTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (12 bp):
AATAAAATAAAT
Found at i:286670 original size:24 final size:23
Alignment explanation
Indices: 286613--286676 Score: 76
Period size: 24 Copynumber: 2.7 Consensus size: 23
286603 GGACTTGAGA
286613 AAAAAC-AAAAAATAAAATAAAT
1 AAAAACAAAAAAATAAAATAAAT
286635 AAAAACGAAAAAAATAAAATAAAAT
1 AAAAAC-AAAAAAATAAAAT-AAAT
*
286660 AAATAATAAAATAAATA
1 AAA-AACAAAA-AAATA
286677 TATATTATAT
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
22 6 0.17
24 12 0.33
25 11 0.31
26 7 0.19
ACGTcount: A:0.80, C:0.03, G:0.02, T:0.16
Consensus pattern (23 bp):
AAAAACAAAAAAATAAAATAAAT
Found at i:286824 original size:75 final size:73
Alignment explanation
Indices: 286745--287076 Score: 257
Period size: 75 Copynumber: 4.3 Consensus size: 73
286735 ATTATACATA
* *
286745 TTTAAAAAC-A-ATTATATAT-T-TTCTAAAAAATATTTTTTTTAAAACACTATATATTATATAT
1 TTTAAAAACTATATTATATATATGTT-T-AAAAA-ATGTTTTTT-AAA-ACTATA-ATTATATAA
286806 GTTTTCAAAATGAT
60 GTTTTCAAAATGAT
**
286820 TTTAAAAACTATATATTATATATATGTTTTTAAAATGTTTTTTAAAACTATAATTATATAAGTTT
1 TTTAAAAAC--TATATTATATATATGTTTAAAAAATGTTTTTTAAAACTATAATTATATAAGTTT
286885 TCAAAATGAT
64 TCAAAATGAT
**
286895 TTTAAAAACTATATTATATATATATATATATGTTTTTAAAATG-TTTTTAAAACTATATATTATA
1 TTTAAAAAC-------TATAT-TATATATATGTTTAAAAAATGTTTTTTAAAACTATA-ATTATA
286959 TAAGTTTTCAAAAATGAT
57 TAAGTTTTC-AAAATGAT
* ** * *
286977 TTTAAAACCTATATATTATATATAT-TTTCCAAAATG-TTTTAAAAACTATATATTATATACGTA
1 TTTAAAAAC--TATATTATATATATGTTTAAAAAATGTTTTTTAAAACTATA-ATTATATAAG--
*
287040 TTTTCAAAAATCA-
61 TTTTC-AAAATGAT
**
287053 TTTGCAAACTATATATATATATAT
1 TTTAAAAACTATAT-TATATATAT
287077 ATATATATAT
Statistics
Matches: 227, Mismatches: 13, Indels: 34
0.83 0.05 0.12
Matches are distributed among these distances:
74 5 0.02
75 81 0.36
76 21 0.09
77 22 0.10
78 9 0.04
79 12 0.05
80 23 0.10
81 38 0.17
82 16 0.07
ACGTcount: A:0.43, C:0.06, G:0.04, T:0.46
Consensus pattern (73 bp):
TTTAAAAACTATATTATATATATGTTTAAAAAATGTTTTTTAAAACTATAATTATATAAGTTTTC
AAAATGAT
Found at i:286842 original size:39 final size:39
Alignment explanation
Indices: 286781--287078 Score: 312
Period size: 39 Copynumber: 7.7 Consensus size: 39
286771 AAAATATTTT
286781 TTTTAAAACACTATATA-T-TATATATGTTTTCAAAATGA
1 TTTTAAAA-ACTATATATTATATATATGTTTTCAAAATGA
* *
286819 TTTTAAAAACTATATATTATATATATGTTTTTAAAATGT
1 TTTTAAAAACTATATATTATATATATGTTTTCAAAATGA
*
286858 TTTTTAAAACTATA-ATTATATA-A-GTTTTCAAAATGA
1 TTTTAAAAACTATATATTATATATATGTTTTCAAAATGA
*
286894 TTTTAAAAACTATATTATATATATATATATATGTTTTTAAAATG-
1 TTTTAAAAAC-----TATATAT-TATATATATGTTTTCAAAATGA
*
286938 TTTTTAAAACTATATATTATATA-A-GTTTTCAAAAATGA
1 TTTTAAAAACTATATATTATATATATGTTTTC-AAAATGA
* *
286976 TTTTAAAACCTATATATTATATATAT-TTTCCAAAATG-
1 TTTTAAAAACTATATATTATATATATGTTTTCAAAATGA
** * *
287013 TTTTAAAAACTATATATTATATACGTATTTTCAAAAATCA
1 TTTTAAAAACTATATATTATATATATGTTTTC-AAAATGA
**
287053 -TTTGCAAACTATATATATATATATAT
1 TTTTAAAAACTATATAT-TATATATAT
287079 ATATATATAT
Statistics
Matches: 220, Mismatches: 21, Indels: 36
0.79 0.08 0.13
Matches are distributed among these distances:
36 25 0.11
37 39 0.18
38 54 0.25
39 62 0.28
40 7 0.03
41 4 0.02
42 2 0.01
43 6 0.03
44 10 0.05
45 11 0.05
ACGTcount: A:0.43, C:0.06, G:0.04, T:0.46
Consensus pattern (39 bp):
TTTTAAAAACTATATATTATATATATGTTTTCAAAATGA
Found at i:286956 original size:119 final size:119
Alignment explanation
Indices: 286792--287035 Score: 342
Period size: 119 Copynumber: 2.1 Consensus size: 119
286782 TTTAAAACAC
*
286792 TATATAT-TATATATGTTTTCAAAATGATTTTAAAAACTATATATTATATATATGTTTT-TAAAA
1 TATATATATATATATGTTTTCAAAATGATTTTAAAAACTATATATTATATA-A-GTTTTCAAAAA
*
286855 TGTTTTTTAAAA-CTATA-ATTATATA-AGTTTT-CAAAATGATTTTAAAAACTATATTA
64 TG-ATTTTAAAACCTATATATTATATATA-TTTTCCAAAATG-TTTTAAAAACTATA-TA
* *
286911 TATATATATATATATGTTTTTAAAATG-TTTTTAAAACTATATATTATATAAGTTTTCAAAAATG
1 TATATATATATATATGTTTTCAAAATGATTTTAAAAACTATATATTATATAAGTTTTCAAAAATG
286975 ATTTTAAAACCTATATATTATATATATTTTCCAAAATGTTTTAAAAACTATATA
66 ATTTTAAAACCTATATATTATATATATTTTCCAAAATGTTTTAAAAACTATATA
287029 T-TATATA
1 TATATATA
287036 CGTATTTTCA
Statistics
Matches: 115, Mismatches: 4, Indels: 14
0.86 0.03 0.11
Matches are distributed among these distances:
117 19 0.17
118 15 0.13
119 55 0.48
120 26 0.23
ACGTcount: A:0.43, C:0.05, G:0.05, T:0.48
Consensus pattern (119 bp):
TATATATATATATATGTTTTCAAAATGATTTTAAAAACTATATATTATATAAGTTTTCAAAAATG
ATTTTAAAACCTATATATTATATATATTTTCCAAAATGTTTTAAAAACTATATA
Found at i:286989 original size:38 final size:37
Alignment explanation
Indices: 286911--287075 Score: 174
Period size: 37 Copynumber: 4.4 Consensus size: 37
286901 AACTATATTA
* * *
286911 TATATATATATATATGTTTT-TAAAATGTTTTTAAAAC
1 TATATAT-TATATAAGTTTTCAAAAATGATTTTAAAAC
286948 TATATATTATATAAGTTTTCAAAAATGATTTTAAAACC
1 TATATATTATATAAGTTTTCAAAAATGATTTTAAAA-C
*
286986 TATATATTATATATA-TTTTCCAAAATG-TTTTAAAAAC
1 TATATATTATATA-AGTTTTCAAAAATGATTTT-AAAAC
* * **
287023 TATATATTATATACGTATTTTCAAAAATCATTTGCAAAC
1 TATATATTATATAAG--TTTTCAAAAATGATTTTAAAAC
287062 TATATATATATATA
1 TATATAT-TATATA
287076 TATATATATA
Statistics
Matches: 110, Mismatches: 9, Indels: 15
0.82 0.07 0.11
Matches are distributed among these distances:
36 11 0.10
37 39 0.35
38 29 0.26
39 22 0.20
40 9 0.08
ACGTcount: A:0.43, C:0.07, G:0.04, T:0.45
Consensus pattern (37 bp):
TATATATTATATAAGTTTTCAAAAATGATTTTAAAAC
Found at i:287069 original size:2 final size:2
Alignment explanation
Indices: 287062--287140 Score: 158
Period size: 2 Copynumber: 39.5 Consensus size: 2
287052 ATTTGCAAAC
287062 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
287104 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
287141 GAAAATGAGT
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 77 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:287891 original size:84 final size:83
Alignment explanation
Indices: 287684--289037 Score: 1572
Period size: 84 Copynumber: 16.4 Consensus size: 83
287674 AACTCGATAA
* * * ** * * * * *
287684 TTTTGTTGACAAATAGCCCTTCTTGCCTTGAGCTATACTGTAAATTTGATTTGCCTCTAAGTTGA
1 TTTTGTTGGCAGATAACCCTTCTTGCCTTGAGCTATGTTGCAAA--TGATGTGCCTTTGAGCTGA
* *
287749 ATGTAATCAAACTCGAAGG-
64 GTGTAATCGAACTCGAAGGC
* * * * *
287768 -TAT-TTGGCAGATAGCCCTTTTTACCTTGAGCTATGTTGCAAATGATGTGCCTTTGAGCTTAGT
1 TTTTGTTGGCAGATAACCCTTCTTGCCTTGAGCTATGTTGCAAATGATGTGCCTTTGAGCTGAGT
* *
287831 GTAATCTAACTCGAAGGTT
66 GTAATCGAACTCGAAGG-C
* ** * *
287850 TTTTGTTGGCAAATAACAGTTCTTGCCTTGAGCTATGTTGCAAATGATGTACATTTGAGCTGAGT
1 TTTTGTTGGCAGATAACCCTTCTTGCCTTGAGCTATGTTGCAAATGATGTGCCTTTGAGCTGAGT
287915 GTAATCGAACTCGAAGGTC
66 GTAATCGAACTCGAAGG-C
*
287934 TTTTGTTGGCAAATAACCCTTCTTGCCTTGAGCTATGTTGCAAATGATGTGCCTTTGAGCTGAGT
1 TTTTGTTGGCAGATAACCCTTCTTGCCTTGAGCTATGTTGCAAATGATGTGCCTTTGAGCTGAGT
287999 GTAATCGAACTCGAAGG-
66 GTAATCGAACTCGAAGGC
* * * * * *
288016 -TCT-TTGGCAGATAGCCCTTCTTGCCTTGAGCTATGCTGCAAATGATATGCCTTTGAGCTAACT
1 TTTTGTTGGCAGATAACCCTTCTTGCCTTGAGCTATGTTGCAAATGATGTGCCTTTGAGCTGAGT
288079 GTAATCGAACTCGAAGGTC
66 GTAATCGAACTCGAAGG-C
* *
288098 TTTTGTTGGCAAATAGCCCTTCTTGCCTTGAGCTATGTTGCAAATGATGTGCCTTTGAGCTGAGT
1 TTTTGTTGGCAGATAACCCTTCTTGCCTTGAGCTATGTTGCAAATGATGTGCCTTTGAGCTGAGT
*
288163 GTAATCGAACTCAAAGG-
66 GTAATCGAACTCGAAGGC
* * * * * *
288180 TCTTTGTTGACAGATAACCCTTCTAGCATTGAGTTATGTTGTAAATGACGTGCCTTTGAGCTGAG
1 T-TTTGTTGGCAGATAACCCTTCTTGCCTTGAGCTATGTTGCAAATGATGTGCCTTTGAGCTGAG
* *
288245 TGTAATTGAACTCGATGG-
65 TGTAATCGAACTCGAAGGC
* * * *
288263 -TCT-TTGGTAGGTAGA-CCTTCTTGCCTTGAGC-ATGCTGCAAATGATGTGCCTTTGAGCTGAG
1 TTTTGTTGGCAGATA-ACCCTTCTTGCCTTGAGCTATGTTGCAAATGATGTGCCTTTGAGCTGAG
*
288324 TATAATCGAACTCGAAGG-
65 TGTAATCGAACTCGAAGGC
* * * * *
288342 TCTTTGTTGACAGATAACCCTTCTAGCCTTGAGTTATGTTGTAAATGACGTGCCTTTGAGCTGAG
1 T-TTTGTTGGCAGATAACCCTTCTTGCCTTGAGCTATGTTGCAAATGATGTGCCTTTGAGCTGAG
*
288407 CGTAATCGAACTCGAAGG-
65 TGTAATCGAACTCGAAGGC
* * * * *
288425 -TCT-TTGGCATG-TAGCCCTTCTAGCCTTGAGCTATGCTGCAAATGATGTGGCTTTGAGCTGAG
1 TTTTGTTGGCA-GATAACCCTTCTTGCCTTGAGCTATGTTGCAAATGATGTGCCTTTGAGCTGAG
*
288487 TGTTATCGAACTCGAAGGAC
65 TGTAATCGAACTCGAAGG-C
* * * * *
288507 TTTTGTTGACAAATAGCCCTTCTTGTCTTGAGATATGTTGCAAATGATGTGCCTTTGAGCTGAGT
1 TTTTGTTGGCAGATAACCCTTCTTGCCTTGAGCTATGTTGCAAATGATGTGCCTTTGAGCTGAGT
288572 GTAATCGAACTCGAAGGTC
66 GTAATCGAACTCGAAGG-C
* *
288591 TTTTGTTGGCAGATAACCCTTCTCGCCTTGAGTTAT-TCTGCAAATGATGTGCCTTTGAGCTGAG
1 TTTTGTTGGCAGATAACCCTTCTTGCCTTGAGCTATGT-TGCAAATGATGTGCCTTTGAGCTGAG
* *
288655 TATAATCAAACTCGAAGG-
65 TGTAATCGAACTCGAAGGC
* * * * * *
288673 TCTTTGTTGACAGATAACCCTTCTAGCATTGAGTTATGTTGTAAATGATATGCCTTTGAGCTGAG
1 T-TTTGTTGGCAGATAACCCTTCTTGCCTTGAGCTATGTTGCAAATGATGTGCCTTTGAGCTGAG
288738 TGTAATCGAACTCGAAGG-
65 TGTAATCGAACTCGAAGGC
* * * * *
288756 -TCT-TTGGCAGGTAACCCTTCTTGCCTTGAGCTATGCTACAAATGATGTGCCTTCGAGCTGAGT
1 TTTTGTTGGCAGATAACCCTTCTTGCCTTGAGCTATGTTGCAAATGATGTGCCTTTGAGCTGAGT
* *
288819 GTAATCGAAATCAAAGGTC
66 GTAATCGAACTCGAAGG-C
* *
288838 TTTTGTTGGCAAATAACCATTCTTGCCTTGAGCTAT-TTGCAAATGATGTGCCTTTGAGCTGAGT
1 TTTTGTTGGCAGATAACCCTTCTTGCCTTGAGCTATGTTGCAAATGATGTGCCTTTGAGCTGAGT
288902 GTAATCGAACTCGAAGG-
66 GTAATCGAACTCGAAGGC
* * * * *
288919 -TCT-TTGGCAGATAGCCTTTCTTGCCTTGAACTATGCTGCAAATGATGTGCCTTTGAGCTGAGT
1 TTTTGTTGGCAGATAACCCTTCTTGCCTTGAGCTATGTTGCAAATGATGTGCCTTTGAGCTGAGT
288982 GTAATCGAACTCGAAGGTC
66 GTAATCGAACTCGAAGG-C
* * *
289001 TTTTGTTGACAGATAACCCTTCTAGCCTTGAGTTATG
1 TTTTGTTGGCAGATAACCCTTCTTGCCTTGAGCTATG
289038 ATGTCGATAG
Statistics
Matches: 1087, Mismatches: 150, Indels: 66
0.83 0.12 0.05
Matches are distributed among these distances:
79 69 0.06
80 299 0.28
81 13 0.01
82 55 0.05
83 238 0.22
84 413 0.38
ACGTcount: A:0.24, C:0.19, G:0.23, T:0.34
Consensus pattern (83 bp):
TTTTGTTGGCAGATAACCCTTCTTGCCTTGAGCTATGTTGCAAATGATGTGCCTTTGAGCTGAGT
GTAATCGAACTCGAAGGC
Found at i:288421 original size:493 final size:493
Alignment explanation
Indices: 287750--289037 Score: 1899
Period size: 493 Copynumber: 2.6 Consensus size: 493
287740 CTAAGTTGAA
* * * * * * *
287750 TGTAATCAAACTCGAAGGTATTTGGCAGATAGCCCTTTTTACCTTGAGCTATGTTGCAAATGATG
1 TGTAATCGAACTCGAAGGTCTTTGGCAGGTAGACCTTCTTGCCTTGAGCTATGCTGCAAATGATG
* * *
287815 TGCCTTTGAGCTTAGTGTAATCTAACTCGAAGGTTTTTTGTTGGCAAATAA-CAGTTCTTGCCTT
66 TGCCTTTGAGCTGAGTGTAATCGAACTCGAAGG-TCTTTGTTGGCAAATAACCA-TTCTTGCCTT
* *
287879 GAGCTATGTTGCAAATGATGTACATTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTTGTTGGC
129 GAGCTATGTTGCAAATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTC---T-TTGGC
* *
287944 AAATAACCCTTCTTGCCTTGAGCTATGTTGCAAATGATGTGCCTTTGAGCTGAGTGTAATCGAAC
190 AAATAGCCCTTCTTGCCTTGAGCTATGCTGCAAATGATGTGCCTTTGAGCTGAGTGTAATCGAAC
*
288009 TCGAAGGTC-TTTG-G-CAGATAGCCCTTCTTGCCTTGAGCTATGCTGCAAATGATATGCCTTTG
255 TCGAAGGTCTTTTGTGACAGATAGCCCTTCTTGCCTTGAGATATGCTGCAAATGATATGCCTTTG
* *
288071 AGCTAACTGTAATCGAACTCGAAGGTCTTTTGTTGGCAAATAGCCCTTCTTGCCTTGAGCTATGT
320 AGCTAACTGTAATCGAACTCGAAGGTCTTTTGTTGGCAAATAACCCTTCTCGCCTTGAGCTAT-T
* *
288136 -TGCAAATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCAAAGGTCTTTGTTGACAGATAACCC
384 CTGCAAATGATGTGCCTTTGAGCTGAGTATAATCAAACTCAAAGGTCTTTGTTGACAGATAACCC
*
288200 TTCTAGCATTGAGTTATGTTGTAAATGACGTGCCTTTGAGCTGAG
449 TTCTAGCATTGAGTTATGTTGTAAATGACATGCCTTTGAGCTGAG
* * *
288245 TGTAATTGAACTCGATGGTCTTTGGTAGGTAGACCTTCTTGCCTTGAGC-ATGCTGCAAATGATG
1 TGTAATCGAACTCGAAGGTCTTTGGCAGGTAGACCTTCTTGCCTTGAGCTATGCTGCAAATGATG
* * * * *
288309 TGCCTTTGAGCTGAGTATAATCGAACTCGAAGGTCTTTGTTGACAGATAACCCTTCTAGCCTTGA
66 TGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTGTTGGCAAATAACCATTCTTGCCTTGA
* * * * **
288374 GTTATGTTGTAAATGACGTGCCTTTGAGCTGAGCGTAATCGAACTCGAAGGTCTTTGGCATGTAG
131 GCTATGTTGCAAATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTGGCAAATAG
* * *
288439 CCCTTCTAGCCTTGAGCTATGCTGCAAATGATGTGGCTTTGAGCTGAGTGTTATCGAACTCGAAG
196 CCCTTCTTGCCTTGAGCTATGCTGCAAATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAG
* * * * * *
288504 GACTTTTGTTGACAAATAGCCCTTCTTGTCTTGAGATATGTTGCAAATGATGTGCCTTTGAGCTG
261 GTCTTTTG-TGACAGATAGCCCTTCTTGCCTTGAGATATGCTGCAAATGATATGCCTTTGAGCTA
* * *
288569 AGTGTAATCGAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTCGCCTTGAGTTATTCTGCAA
325 ACTGTAATCGAACTCGAAGGTCTTTTGTTGGCAAATAACCCTTCTCGCCTTGAGCTATTCTGCAA
*
288634 ATGATGTGCCTTTGAGCTGAGTATAATCAAACTCGAAGGTCTTTGTTGACAGATAACCCTTCTAG
390 ATGATGTGCCTTTGAGCTGAGTATAATCAAACTCAAAGGTCTTTGTTGACAGATAACCCTTCTAG
*
288699 CATTGAGTTATGTTGTAAATGATATGCCTTTGAGCTGAG
455 CATTGAGTTATGTTGTAAATGACATGCCTTTGAGCTGAG
*
288738 TGTAATCGAACTCGAAGGTCTTTGGCAGGTA-ACCCTTCTTGCCTTGAGCTATGCTACAAATGAT
1 TGTAATCGAACTCGAAGGTCTTTGGCAGGTAGA-CCTTCTTGCCTTGAGCTATGCTGCAAATGAT
* * *
288802 GTGCCTTCGAGCTGAGTGTAATCGAAATCAAAGGTCTTTTGTTGGCAAATAACCATTCTTGCCTT
65 GTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTC-TTTGTTGGCAAATAACCATTCTTGCCTT
*
288867 GAGCTAT-TTGCAAATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTGGCAGAT
129 GAGCTATGTTGCAAATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTGGCAAAT
* *
288931 AGCCTTTCTTGCCTTGAACTATGCTGCAAATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGA
194 AGCCCTTCTTGCCTTGAGCTATGCTGCAAATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGA
* * *
288996 AGGTCTTTTGTTGACAGATAACCCTTCTAGCCTTGAGTTATG
259 AGGTCTTTTG-TGACAGATAGCCCTTCTTGCCTTGAGATATG
289038 ATGTCGATAG
Statistics
Matches: 707, Mismatches: 77, Indels: 19
0.88 0.10 0.02
Matches are distributed among these distances:
489 71 0.10
490 5 0.01
492 3 0.00
493 320 0.45
494 238 0.34
495 70 0.10
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.34
Consensus pattern (493 bp):
TGTAATCGAACTCGAAGGTCTTTGGCAGGTAGACCTTCTTGCCTTGAGCTATGCTGCAAATGATG
TGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTGTTGGCAAATAACCATTCTTGCCTTGA
GCTATGTTGCAAATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTGGCAAATAG
CCCTTCTTGCCTTGAGCTATGCTGCAAATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAG
GTCTTTTGTGACAGATAGCCCTTCTTGCCTTGAGATATGCTGCAAATGATATGCCTTTGAGCTAA
CTGTAATCGAACTCGAAGGTCTTTTGTTGGCAAATAACCCTTCTCGCCTTGAGCTATTCTGCAAA
TGATGTGCCTTTGAGCTGAGTATAATCAAACTCAAAGGTCTTTGTTGACAGATAACCCTTCTAGC
ATTGAGTTATGTTGTAAATGACATGCCTTTGAGCTGAG
Found at i:290842 original size:15 final size:15
Alignment explanation
Indices: 290821--290857 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
290811 TTAATGTAAT
*
290821 GAAAAAAGAAAAGAA
1 GAAAAAAGAAAAAAA
*
290836 TAAAAAAGAAAAAAA
1 GAAAAAAGAAAAAAA
290851 GAAAAAA
1 GAAAAAA
290858 ATAATGCGAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.14, T:0.03
Consensus pattern (15 bp):
GAAAAAAGAAAAAAA
Found at i:292523 original size:41 final size:41
Alignment explanation
Indices: 292466--292548 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
292456 AAAAATTAAA
*
292466 ATTTAAAAACTCGATTCGAATTACTTACCTTCGATTGATTG
1 ATTTAAAAACTCGATTCGAATTACTCACCTTCGATTGATTG
292507 ATTTAAAAACTCGATTCGAATTACTCACCTTCGATTGATTG
1 ATTTAAAAACTCGATTCGAATTACTCACCTTCGATTGATTG
292548 A
1 A
292549 AATTACCACT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.37
Consensus pattern (41 bp):
ATTTAAAAACTCGATTCGAATTACTCACCTTCGATTGATTG
Found at i:292737 original size:15 final size:15
Alignment explanation
Indices: 292713--292743 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
292703 GTAAAAAAAG
*
292713 AAATAGAAAATAATA
1 AAATAAAAAATAATA
292728 AAATAAAAAATAATA
1 AAATAAAAAATAATA
292743 A
1 A
292744 GAAGGTTAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.19
Consensus pattern (15 bp):
AAATAAAAAATAATA
Found at i:294130 original size:24 final size:24
Alignment explanation
Indices: 294097--294165 Score: 74
Period size: 23 Copynumber: 2.9 Consensus size: 24
294087 GGACATGAGA
294097 AAAAACAAAAGAA-TAAAAT-AAAT
1 AAAAACAAAA-AAGTAAAATAAAAT
294120 AAAAACGAAAAAAGTAAAATAAAAT
1 AAAAAC-AAAAAAGTAAAATAAAAT
*
294145 -AAAACAAATAA-TAAAAATAAA
1 AAAAACAAAAAAGT-AAAATAAA
294166 TATATATTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
22 1 0.02
23 21 0.51
24 15 0.37
25 4 0.10
ACGTcount: A:0.78, C:0.04, G:0.04, T:0.13
Consensus pattern (24 bp):
AAAAACAAAAAAGTAAAATAAAAT
Found at i:294245 original size:2 final size:2
Alignment explanation
Indices: 294221--294267 Score: 62
Period size: 2 Copynumber: 24.5 Consensus size: 2
294211 ATTTTCAAAC
* *
294221 TA TA TA T- TA TA CA TA TT TA -A TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
294261 TA TA TA T
1 TA TA TA T
294268 TCTAAAAAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
1 2 0.05
2 37 0.95
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:294326 original size:38 final size:38
Alignment explanation
Indices: 294284--294421 Score: 167
Period size: 38 Copynumber: 3.6 Consensus size: 38
294274 AAAAATATTT
294284 TTTTAAAAACTATATATTATATAAGTTTTCAAAAATGA
1 TTTTAAAAACTATATATTATATAAGTTTTCAAAAATGA
* *
294322 TTTTAAAACCTATATATTATATATA-TTTTCCAAAATG-
1 TTTTAAAAACTATATATTATATA-AGTTTTCAAAAATGA
* *
294359 TTTT-AAAACTATATATTATATATGTATTTTCAAAAATCA
1 TTTTAAAAACTATATATTATATAAG--TTTTCAAAAATGA
294398 -TTTACAAAACTATATATATATATA
1 TTTTA-AAAACTATATAT-TATATA
294422 TATATATATA
Statistics
Matches: 86, Mismatches: 6, Indels: 13
0.82 0.06 0.12
Matches are distributed among these distances:
36 17 0.20
37 4 0.05
38 46 0.53
39 1 0.01
40 12 0.14
41 6 0.07
ACGTcount: A:0.45, C:0.08, G:0.03, T:0.44
Consensus pattern (38 bp):
TTTTAAAAACTATATATTATATAAGTTTTCAAAAATGA
Found at i:294389 original size:76 final size:76
Alignment explanation
Indices: 294284--294424 Score: 207
Period size: 76 Copynumber: 1.9 Consensus size: 76
294274 AAAAATATTT
* *
294284 TTTTAAAAACTATATATTATATAAGTTTTCAAAAATGATTTTA-AAACCTATATAT-TATATATA
1 TTTTAAAAACTATATATTATATAAGTTTTCAAAAATCA-TTTACAAAACTATATATATATATATA
294347 TTTTCCAAAATG
65 TTTTCCAAAATG
*
294359 TTTT-AAAACTATATATTATATATGTATTTTCAAAAATCATTTACAAAACTATATATATATATAT
1 TTTTAAAAACTATATATTATATAAG--TTTTCAAAAATCATTTACAAAACTATATATATATATAT
294423 AT
64 AT
294425 ATATATATAT
Statistics
Matches: 59, Mismatches: 3, Indels: 6
0.87 0.04 0.09
Matches are distributed among these distances:
74 19 0.32
75 8 0.14
76 23 0.39
77 9 0.15
ACGTcount: A:0.45, C:0.08, G:0.03, T:0.45
Consensus pattern (76 bp):
TTTTAAAAACTATATATTATATAAGTTTTCAAAAATCATTTACAAAACTATATATATATATATAT
TTTCCAAAATG
Found at i:294415 original size:2 final size:2
Alignment explanation
Indices: 294408--294439 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
294398 TTTACAAAAC
294408 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
294440 GACAAAAATG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:295075 original size:27 final size:28
Alignment explanation
Indices: 295016--295089 Score: 114
Period size: 27 Copynumber: 2.6 Consensus size: 28
295006 TTAAAGAATA
295016 AATTTATAAAATTTTAGAAAAAAAAAAAACG
1 AATTTATAAAATTTTAG---AAAAAAAAACG
295047 AATTTATAAAATTTTAG-AAAAAAAACG
1 AATTTATAAAATTTTAGAAAAAAAAACG
295074 AATTTATAAAATTTTA
1 AATTTATAAAATTTTA
295090 AGAGATAAAA
Statistics
Matches: 43, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
27 26 0.60
31 17 0.40
ACGTcount: A:0.59, C:0.03, G:0.05, T:0.32
Consensus pattern (28 bp):
AATTTATAAAATTTTAGAAAAAAAAACG
Found at i:295100 original size:31 final size:29
Alignment explanation
Indices: 295016--295100 Score: 111
Period size: 27 Copynumber: 2.9 Consensus size: 29
295006 TTAAAGAATA
*
295016 AATTTATAAAATTTTAGAAAAAAAAAAAACG
1 AATTTATAAAATTTTAG--AGAAAAAAAACG
295047 AATTTATAAAATTTT--AGAAAAAAAACG
1 AATTTATAAAATTTTAGAGAAAAAAAACG
*
295074 AATTTATAAAATTTTAAGAGATAAAAA
1 AATTTATAAAATTTT-AGAGAAAAAAA
295101 TAAAATATTA
Statistics
Matches: 49, Mismatches: 2, Indels: 7
0.84 0.03 0.12
Matches are distributed among these distances:
27 26 0.53
30 8 0.16
31 15 0.31
ACGTcount: A:0.61, C:0.02, G:0.07, T:0.29
Consensus pattern (29 bp):
AATTTATAAAATTTTAGAGAAAAAAAACG
Found at i:301154 original size:28 final size:30
Alignment explanation
Indices: 301118--301179 Score: 83
Period size: 28 Copynumber: 2.1 Consensus size: 30
301108 TATTAATCTA
*
301118 AATATTTTTAATTATAAAATTGA-AAAAAT
1 AATATTTTTAATAATAAAATTGACAAAAAT
* *
301147 AATA-TTTTAATAATAATATTGACATAAAT
1 AATATTTTTAATAATAAAATTGACAAAAAT
301176 AATA
1 AATA
301180 CTAAATAAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 16 0.55
29 13 0.45
ACGTcount: A:0.55, C:0.02, G:0.03, T:0.40
Consensus pattern (30 bp):
AATATTTTTAATAATAAAATTGACAAAAAT
Found at i:307422 original size:22 final size:23
Alignment explanation
Indices: 307383--307432 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 23
307373 TTCGTTTGGG
* *
307383 TTATATATGTATATTATTAGTTAT
1 TTATAAATGTATATTATTA-TTAA
307407 TTATAAATGT-TA-TATTATTAA
1 TTATAAATGTATATTATTATTAA
307428 TTATA
1 TTATA
307433 TAGGTTAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 8 0.33
22 5 0.21
23 2 0.08
24 9 0.38
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (23 bp):
TTATAAATGTATATTATTATTAA
Found at i:307425 original size:25 final size:24
Alignment explanation
Indices: 307383--307431 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 24
307373 TTCGTTTGGG
* *
307383 TTATATATGTATATTATTAGTTAT
1 TTATAAATGTATATTATTAATTAT
307407 TTATAAATGTTATATTATTAATTAT
1 TTATAAATG-TATATTATTAATTAT
307432 ATAGGTTAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 8 0.36
25 14 0.64
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.57
Consensus pattern (24 bp):
TTATAAATGTATATTATTAATTAT
Found at i:307540 original size:13 final size:13
Alignment explanation
Indices: 307522--307546 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
307512 GAGCCCAATC
307522 ATAAGCCCAAAGG
1 ATAAGCCCAAAGG
307535 ATAAGCCCAAAG
1 ATAAGCCCAAAG
307547 CAATAAGGGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.24, G:0.20, T:0.08
Consensus pattern (13 bp):
ATAAGCCCAAAGG
Found at i:319851 original size:45 final size:45
Alignment explanation
Indices: 319800--320231 Score: 459
Period size: 45 Copynumber: 9.7 Consensus size: 45
319790 ACAGATTGAT
* *
319800 AGAGGAGTCAATCTTTCAGTGTTGTAACTT-TTGACTTTCTCGTGA
1 AGAGGAGTCAATCTTTTAGTGTTGTCA-TTCTTGACTTTCTCGTGA
* *
319845 AGAGGAGTCAATCTTTTAGTGTTGTCATTATTGACTTTCTCATGA
1 AGAGGAGTCAATCTTTTAGTGTTGTCATTCTTGACTTTCTCGTGA
*
319890 AGAGGAATCAATC-TTTAGTGTTGTCATTCTTGACTTTCTCGTGA
1 AGAGGAGTCAATCTTTTAGTGTTGTCATTCTTGACTTTCTCGTGA
* * *
319934 AGAGGAATCAAT-ATTTAGTGTTGTCATTCTTTACATTT-TCGTGA
1 AGAGGAGTCAATCTTTTAGTGTTGTCATTCTTGAC-TTTCTCGTGA
* ** * *
319978 AAATAAGTCAATC-TTTAGTGTTGTCATT-TTTACTTTCTCATGA
1 AGAGGAGTCAATCTTTTAGTGTTGTCATTCTTGACTTTCTCGTGA
* *
320021 AG-GTAAGTCAATCTTTTAGTGTTGTCATTCTTGACTTTCTCACT-A
1 AGAG-GAGTCAATCTTTTAGTGTTGTCATTCTTGACTTTCTC-GTGA
* *
320066 AGAGAAGT-AATTCTTTTAGTGTTGTCCTTCTTGACTTTCTCGTGA
1 AGAGGAGTCAA-TCTTTTAGTGTTGTCATTCTTGACTTTCTCGTGA
* * * * * * *
320111 AGAGAAGTCAACCTTTTAGTGATGTTATTCCTAACTTTCTCGCGA
1 AGAGGAGTCAATCTTTTAGTGTTGTCATTCTTGACTTTCTCGTGA
* * * * * *
320156 AGAGGAGTCAGTCTTTTAGCGGTGTTATTCTTGACTTTCTCGGGG
1 AGAGGAGTCAATCTTTTAGTGTTGTCATTCTTGACTTTCTCGTGA
* * *
320201 AGATGAGTCAACCTTTTAGTGATGTCATTCT
1 AGAGGAGTCAATCTTTTAGTGTTGTCATTCT
320232 CAACTTAACT
Statistics
Matches: 334, Mismatches: 40, Indels: 26
0.83 0.10 0.06
Matches are distributed among these distances:
42 3 0.01
43 20 0.06
44 110 0.33
45 197 0.59
46 4 0.01
ACGTcount: A:0.23, C:0.16, G:0.20, T:0.41
Consensus pattern (45 bp):
AGAGGAGTCAATCTTTTAGTGTTGTCATTCTTGACTTTCTCGTGA
Found at i:321148 original size:135 final size:133
Alignment explanation
Indices: 320946--321752 Score: 1019
Period size: 135 Copynumber: 6.0 Consensus size: 133
320936 AGAGTGGTGG
* ** * *
320946 AGTGAATCAAAATTTTCTCGAGTCTGACCTACCATAAAGAGTAGCACAGCATATTCTTTTTCTTT
1 AGTGAATCAAAATTTTCTCGAGTCTGACCT-CCCTAAAGAGTAGCGGAGCAGATTCTTATTCTTT
** * * * *
321011 CAGATTTGGTCTTCCTGAATTGTAGTAAATCAAATCACATTCGATTCAATCTTCCCTAAAGAGCA
65 CAGATTTGGTCTTCCTGAAGAGCAGTGAAGCAAATCACATTCGATTCAATCTTCCCTGAAGAGCA
*
321076 TCGA
130 GCGA
* * * *
321080 AGTGAATCAAAGTTTTTCTCAAGTCTGACCTACCCTAAAGAATAGCGGAGCAGATTATTATTCTT
1 AGTGAATCAAA-ATTTTCTCGAGTCTGACCT-CCCTAAAGAGTAGCGGAGCAGATTCTTATTCTT
* *
321145 TCAGATTTGGTCTTCCTGAAGAGCAGTGAAGCAAATCACATTCGATTTAATATTCCCTGAAGAGC
64 TCAGATTTGGTCTTCCTGAAGAGCAGTGAAGCAAATCACATTCGATTCAATCTTCCCTGAAGAGC
*
321210 AGCAA
129 AGCGA
* * * *
321215 AGTGAATCAAAGTTTTTCTCGAGTCTGACCTCCTATAAAGAGTAGCAGAGCAGATTCTTCTTCTT
1 AGTGAATCAAA-ATTTTCTCGAGTCTGACCTCC-CTAAAGAGTAGCGGAGCAGATTCTTATTCTT
* *
321280 TAAGATTTGGTCTTCCTGAAGAGAAGTGAAGCAAATCACATTCGATTCAATCTTCCCTGAAGAGC
64 TCAGATTTGGTCTTCCTGAAGAGCAGTGAAGCAAATCACATTCGATTCAATCTTCCCTGAAGAGC
*
321345 TGCGA
129 AGCGA
* * * * * * *
321350 AGTGAATCAAATTTTTTCTCTAGTTTGAGCTCCCCTAAAGATTAGCGGGGCATATTCTTATTCTT
1 AGTGAATCAAA-ATTTTCTCGAGTCTGACCT-CCCTAAAGAGTAGCGGAGCAGATTCTTATTCTT
* *
321415 TCAGATTTGGTCTTCCTAAAGAGCAGTGAAGCAAATCATATTCGATTCAATCTTCCCTGAAGAGC
64 TCAGATTTGGTCTTCCTGAAGAGCAGTGAAGCAAATCACATTCGATTCAATCTTCCCTGAAGAGC
321480 AGCGA
129 AGCGA
* * *
321485 AGTGAATCAAAATTTTCTCGAGTCTTACCTCCCCTAAAGAGTAGCGAAGCAGATTCTTCTTCTTT
1 AGTGAATCAAAATTTTCTCGAGTCTGACCT-CCCTAAAGAGTAGCGGAGCAGATTCTTATTCTTT
* * * * *
321550 CAGATTTGGTATTCCT-AATGTGCATTGAAGCAAATCACATTCGATTCAATCTTACCTAAAGAGC
65 CAGATTTGGTCTTCCTGAA-GAGCAGTGAAGCAAATCACATTCGATTCAATCTTCCCTGAAGAGC
321614 AGCGA
129 AGCGA
* * *
321619 AGTGAATCAAAATTTTCTCGAGTCTGACCTCCTCTAAAGAGTAGAGGAGTAGATT-TTTTTCTTT
1 AGTGAATCAAAATTTTCTCGAGTCTGACCTCC-CTAAAGAGTAGCGGAGCAGATTCTTATTCTTT
* * * * *
321683 TAGATTTGGTCTTCCTGAAGAGCAATGAAGCAAATCA-AGTCCGATTTAGTCTT-CCTGAAGAGC
65 CAGATTTGGTCTTCCTGAAGAGCAGTGAAGCAAATCACA-TTCGATTCAATCTTCCCTGAAGAGC
*
321746 AACGA
129 AGCGA
321751 AG
1 AG
321753 CAAATCAAGT
Statistics
Matches: 590, Mismatches: 76, Indels: 16
0.87 0.11 0.02
Matches are distributed among these distances:
132 16 0.03
133 53 0.09
134 167 0.28
135 352 0.60
136 2 0.00
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32
Consensus pattern (133 bp):
AGTGAATCAAAATTTTCTCGAGTCTGACCTCCCTAAAGAGTAGCGGAGCAGATTCTTATTCTTTC
AGATTTGGTCTTCCTGAAGAGCAGTGAAGCAAATCACATTCGATTCAATCTTCCCTGAAGAGCAG
CGA
Found at i:321740 original size:40 final size:40
Alignment explanation
Indices: 321685--321778 Score: 143
Period size: 40 Copynumber: 2.4 Consensus size: 40
321675 TTTTCTTTTA
* *
321685 GATTTGGTCTTCCTGAAGAGCAATGAAGCAAATCAAGTCC
1 GATTTAGTCTTCCTGAAGAGCAACGAAGCAAATCAAGTCC
**
321725 GATTTAGTCTTCCTGAAGAGCAACGAAGCAAATCAAGTTT
1 GATTTAGTCTTCCTGAAGAGCAACGAAGCAAATCAAGTCC
*
321765 GATTCAGTCTTCCT
1 GATTTAGTCTTCCT
321779 ATAAGAGAAA
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 49 1.00
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (40 bp):
GATTTAGTCTTCCTGAAGAGCAACGAAGCAAATCAAGTCC
Found at i:322037 original size:134 final size:134
Alignment explanation
Indices: 321725--322070 Score: 392
Period size: 134 Copynumber: 2.6 Consensus size: 134
321715 AATCAAGTCC
* * * *
321725 GATTTAGTCTTCCTGAAGAGCAACGAAGCAAATCAAGTTTGATTCAGTCTT-CCTATAAGAGAAA
1 GATTTAGTCTTCCTGAAGAGCAACGAAGCAAATCAAGTTTGATTCAATCTTCCCT-GAAGAGCAG
* * ** * *
321789 AGGAGTGGATCCAAGTTTTTCTTGAGTCTGACTTCCCCTAAAGAGTACTGGAGCATATTCTTCTT
65 CGAAGTGGAT-CAAAATTTTCTCGAGTCTGACTTCCCCTAAAGAGTACTGGAGCAGATTCTTCTT
321854 CTTGCA
129 CTTGCA
* * * * *
321860 TATTTGGTATTCCTGAAGATCAATGAAGCAAATCAAGTTTGATTCAATCTTCCCTGAAGAGCAGC
1 GATTTAGTCTTCCTGAAGAGCAACGAAGCAAATCAAGTTTGATTCAATCTTCCCTGAAGAGCAGC
* ** *
321925 GAAGTGGATCAAAATTTTCTCGAGTTTGA-TCTCCTTTAAAGAGTAGTGGAGCAGATTCTTCTTC
66 GAAGTGGATCAAAATTTTCTCGAGTCTGACT-TCCCCTAAAGAGTACTGGAGCAGATTCTTCTTC
*
321989 TTTCA
130 TTGCA
* * ** *
321994 GATTTAGTCTTCCTAAAGAGCAACGAAGTAAATTGA-TTCTGATTCAACCTTCCCTGAAGAGCAG
1 GATTTAGTCTTCCTGAAGAGCAACGAAGCAAATCAAGTT-TGATTCAATCTTCCCTGAAGAGCAG
* *
322058 CAAAGTGAATCAA
65 CGAAGTGGATCAA
322071 TTTTTTTTAA
Statistics
Matches: 176, Mismatches: 32, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
133 3 0.02
134 111 0.63
135 59 0.34
136 3 0.02
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32
Consensus pattern (134 bp):
GATTTAGTCTTCCTGAAGAGCAACGAAGCAAATCAAGTTTGATTCAATCTTCCCTGAAGAGCAGC
GAAGTGGATCAAAATTTTCTCGAGTCTGACTTCCCCTAAAGAGTACTGGAGCAGATTCTTCTTCT
TGCA
Found at i:322334 original size:12 final size:12
Alignment explanation
Indices: 322296--322336 Score: 57
Period size: 12 Copynumber: 3.4 Consensus size: 12
322286 CTTATATATG
322296 TATATTATTAGT
1 TATATTATTAGT
322308 TAT-TTATTTAGT
1 TATATTA-TTAGT
*
322320 TATATTATTAAT
1 TATATTATTAGT
322332 TATAT
1 TATAT
322337 AGGTTAATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
11 3 0.12
12 20 0.77
13 3 0.12
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (12 bp):
TATATTATTAGT
Found at i:331671 original size:22 final size:20
Alignment explanation
Indices: 331645--331689 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 20
331635 GGTATATTGG
*
331645 TACCATAGTATAGTAGTATCGA
1 TACCATAGTAGAG--GTATCGA
*
331667 TACCATGGTAGAGGTATCGA
1 TACCATAGTAGAGGTATCGA
331687 TAC
1 TAC
331690 TATGGAGCCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 10 0.48
22 11 0.52
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (20 bp):
TACCATAGTAGAGGTATCGA
Found at i:332100 original size:55 final size:54
Alignment explanation
Indices: 332014--332337 Score: 416
Period size: 55 Copynumber: 5.9 Consensus size: 54
332004 CTTAGTGTAC
*
332014 TACATGAACTATGTGTGCAAATCCACGGAATTCATCATGAGTTGATGAATAACCG
1 TACATGCACTATGTGTGCAAATCCAC-GAATTCATCATGAGTTGATGAATAACCG
* *
332069 TACATGCACTATGTATGCAAATCCACAGAATTCATCATGTGTTGATGAATAACCG
1 TACATGCACTATGTGTGCAAATCCAC-GAATTCATCATGAGTTGATGAATAACCG
**
332124 TACATGCACTATGTGTGCAAATCCACGAAATTCATCATGAGTTGATGAATAATTG
1 TACATGCACTATGTGTGCAAATCCACG-AATTCATCATGAGTTGATGAATAACCG
* * * * *
332179 TACAGGAACTATGTATGCAATTCCACAGAATTCATCATGAGTTGATGAATAACCA
1 TACATGCACTATGTGTGCAAATCCAC-GAATTCATCATGAGTTGATGAATAACCG
* * * *
332234 TACAAGCACTATGTGTGCAATTCTACGGAATTCATCATGAGTTGATGAATAACCA
1 TACATGCACTATGTGTGCAAATCCAC-GAATTCATCATGAGTTGATGAATAACCG
* * * * *
332289 TAAAAGCACTATGTGTGC-AACCCACGAAATTCATCATAAATTGATGAAT
1 TACATGCACTATGTGTGCAAATCCACG-AATTCATCATGAGTTGATGAAT
332338 TACATTATAG
Statistics
Matches: 240, Mismatches: 26, Indels: 7
0.88 0.10 0.03
Matches are distributed among these distances:
53 1 0.00
54 25 0.10
55 213 0.89
56 1 0.00
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.28
Consensus pattern (54 bp):
TACATGCACTATGTGTGCAAATCCACGAATTCATCATGAGTTGATGAATAACCG
Found at i:332300 original size:165 final size:164
Alignment explanation
Indices: 332014--332337 Score: 486
Period size: 165 Copynumber: 2.0 Consensus size: 164
332004 CTTAGTGTAC
* * * * *
332014 TACATGAACTATGTGTGCAAATCCACGGAATTCATCATGAGTTGATGAATAACCGTACATGCACT
1 TACAGGAACTATGTATGCAAATCCACAGAATTCATCATGAGTTGATGAATAACCATACAAGCACT
* * * *
332079 ATGTATGCAAATCCACAGAATTCATCATGTGTTGATGAATAACCGTACATGCACTATGTGTGCAA
66 ATGTATGCAAATCCACAGAATTCATCATGAGTTGATGAATAACCATAAAAGCACTATGTGTGC-A
* * *
332144 ATCCACGAAATTCATCATGAGTTGATGAATAATTG
130 ACCCACGAAATTCATCATAAATTGATGAATAATTG
*
332179 TACAGGAACTATGTATGCAATTCCACAGAATTCATCATGAGTTGATGAATAACCATACAAGCACT
1 TACAGGAACTATGTATGCAAATCCACAGAATTCATCATGAGTTGATGAATAACCATACAAGCACT
* * * *
332244 ATGTGTGCAATTCTACGGAATTCATCATGAGTTGATGAATAACCATAAAAGCACTATGTGTGCAA
66 ATGTATGCAAATCCACAGAATTCATCATGAGTTGATGAATAACCATAAAAGCACTATGTGTGCAA
332309 CCCACGAAATTCATCATAAATTGATGAAT
131 CCCACGAAATTCATCATAAATTGATGAAT
332338 TACATTATAG
Statistics
Matches: 142, Mismatches: 17, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
164 28 0.20
165 114 0.80
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.28
Consensus pattern (164 bp):
TACAGGAACTATGTATGCAAATCCACAGAATTCATCATGAGTTGATGAATAACCATACAAGCACT
ATGTATGCAAATCCACAGAATTCATCATGAGTTGATGAATAACCATAAAAGCACTATGTGTGCAA
CCCACGAAATTCATCATAAATTGATGAATAATTG
Found at i:338178 original size:22 final size:22
Alignment explanation
Indices: 338150--338197 Score: 96
Period size: 22 Copynumber: 2.2 Consensus size: 22
338140 GATGTTTACT
338150 GGTAGATTTGACTTGTCAAAGA
1 GGTAGATTTGACTTGTCAAAGA
338172 GGTAGATTTGACTTGTCAAAGA
1 GGTAGATTTGACTTGTCAAAGA
338194 GGTA
1 GGTA
338198 AATGAGAGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.31, C:0.08, G:0.29, T:0.31
Consensus pattern (22 bp):
GGTAGATTTGACTTGTCAAAGA
Found at i:339043 original size:55 final size:55
Alignment explanation
Indices: 338972--339282 Score: 446
Period size: 55 Copynumber: 5.7 Consensus size: 55
338962 AAATTTACGT
* * * * *
338972 AATTCATCATGAGTTGATGAATAACCGTACATGCATTATATGTGCAAATCCACAG
1 AATTCATCATGAGTTGATGAATAACCGTACAGGCACTATGTGTGTAAATCCACGG
* * *
339027 AATTCATCATGAGTTGATGAATAACCATACAGACACTATGTGTGTAAATCCATGG
1 AATTCATCATGAGTTGATGAATAACCGTACAGGCACTATGTGTGTAAATCCACGG
339082 AATTCATCATGAGTTGATGAATAACCGTACAGGCACTATGTGTGTAAATCCACGG
1 AATTCATCATGAGTTGATGAATAACCGTACAGGCACTATGTGTGTAAATCCACGG
* * * *
339137 AATTCATCATGAGTTGATAAATATCCGTACAGGCACTATGTGTGTAATTCTACGG
1 AATTCATCATGAGTTGATGAATAACCGTACAGGCACTATGTGTGTAAATCCACGG
* * * *
339192 AATTCATCATGAGTTGATGAAT-ACTGTACATGCACTATGTGTG-CAACCCACGG
1 AATTCATCATGAGTTGATGAATAACCGTACAGGCACTATGTGTGTAAATCCACGG
* *
339245 AATTCATCATGAGTTGATGAATTACCGTATAGGCACTA
1 AATTCATCATGAGTTGATGAATAACCGTACAGGCACTA
339283 CTTGTGCATT
Statistics
Matches: 229, Mismatches: 26, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
53 28 0.12
54 30 0.13
55 171 0.75
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Consensus pattern (55 bp):
AATTCATCATGAGTTGATGAATAACCGTACAGGCACTATGTGTGTAAATCCACGG
Found at i:342156 original size:2 final size:2
Alignment explanation
Indices: 342149--342259 Score: 222
Period size: 2 Copynumber: 55.5 Consensus size: 2
342139 TTATTTCGAG
342149 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
342191 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
342233 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
342260 TATGGAAATA
Statistics
Matches: 109, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 109 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:343068 original size:21 final size:22
Alignment explanation
Indices: 343042--343083 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
343032 CCTATTTCTT
343042 AAAAAAA-CTCTCAAACCTCCA
1 AAAAAAACCTCTCAAACCTCCA
*
343063 AAAAAAACCTCTCAACCCTCC
1 AAAAAAACCTCTCAAACCTCC
343084 CCATCCGGTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.48, C:0.38, G:0.00, T:0.14
Consensus pattern (22 bp):
AAAAAAACCTCTCAAACCTCCA
Found at i:343804 original size:6 final size:6
Alignment explanation
Indices: 343772--343804 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
343762 AAAAAGAAAT
343772 AAAT-A AAATGA AAATGA AAATGA AAATGA AAAT
1 AAATGA AAATGA AAATGA AAATGA AAATGA AAAT
343805 ATTATATATT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 4 0.15
6 23 0.85
ACGTcount: A:0.70, C:0.00, G:0.12, T:0.18
Consensus pattern (6 bp):
AAATGA
Found at i:343882 original size:37 final size:37
Alignment explanation
Indices: 343840--343938 Score: 100
Period size: 36 Copynumber: 2.8 Consensus size: 37
343830 AAATCATATT
343840 ATATATATATATATATATATTTAAAAAAAATTT-AAA
1 ATATATATATATATATATATTTAAAAAAAATTTCAAA
* * * *
343876 ACTATATAT-TATATGTACT-TTCAAAAACATTTTCAAA
1 A-TATATATATATATATA-TATTTAAAAAAAATTTCAAA
*
343913 AT-TATATAT-TATATATATTTCAAAAA
1 ATATATATATATATATATATTTAAAAAA
343939 TGTTTTCAAA
Statistics
Matches: 50, Mismatches: 8, Indels: 11
0.72 0.12 0.16
Matches are distributed among these distances:
34 1 0.02
35 16 0.32
36 21 0.42
37 12 0.24
ACGTcount: A:0.51, C:0.06, G:0.01, T:0.42
Consensus pattern (37 bp):
ATATATATATATATATATATTTAAAAAAAATTTCAAA
Found at i:343958 original size:37 final size:37
Alignment explanation
Indices: 343842--344139 Score: 170
Period size: 37 Copynumber: 8.0 Consensus size: 37
343832 ATCATATTAT
***
343842 ATATATATATATATATATTT-AAAAAAAATTT--AAAA
1 ATATATAT-TATATATATTTCAAAAATGTTTTCAAAAA
* * **
343877 CTATATATTATATGTACTTTCAAAAACATTTTC-AAAA
1 ATATATATTATATATA-TTTCAAAAATGTTTTCAAAAA
*
343914 TTATATATTATATATATTTCAAAAATGTTTTCAAAAA
1 ATATATATTATATATATTTCAAAAATGTTTTCAAAAA
* * *
343951 ATCTATATATTAAATATATCTTTTC-AAAATGTTTTC-ATAT
1 A--TATATATT--ATATAT-ATTTCAAAAATGTTTTCAAAAA
* * *
343991 CTATATAATATATATTTTTTCAAAAATCG-TTTC-AAAA
1 ATATATATTATATA-TATTTCAAAAAT-GTTTTCAAAAA
* * * *
344028 CTATATAATATATAT-TTTCAAAAATCAATTTTTAAAAA
1 ATATATATTATATATATTTCAAAAAT--GTTTTCAAAAA
* * *
344066 GGTATATATTATATGCT-TTTC-AAAACGTTTTCTAAAAA
1 -ATATATATTATAT-ATATTTCAAAAATGTTTTC-AAAAA
* * *
344104 CTATATATTATAT-TTTTTCAAAAATATTTTCAAAAA
1 ATATATATTATATATATTTCAAAAATGTTTTCAAAAA
344140 CAATACTATA
Statistics
Matches: 215, Mismatches: 28, Indels: 39
0.76 0.10 0.14
Matches are distributed among these distances:
34 7 0.03
35 21 0.10
36 43 0.20
37 76 0.35
38 17 0.08
39 23 0.11
40 7 0.03
41 17 0.08
42 4 0.02
ACGTcount: A:0.45, C:0.08, G:0.03, T:0.44
Consensus pattern (37 bp):
ATATATATTATATATATTTCAAAAATGTTTTCAAAAA
Found at i:344906 original size:200 final size:201
Alignment explanation
Indices: 344662--345416 Score: 914
Period size: 201 Copynumber: 3.8 Consensus size: 201
344652 AAACACAACT
* * * * * * *
344662 AACCCGGGTCTTCTTCTTGAATTAAAGACCTCGGCTTAAACTTCAACCGAAAAGTAGTTCCCCGC
1 AACCCAGGTCTTCTTCTTGACTTAAAGACCTCAGTTTAAAATTCAACCGAAAAGTAGTTCCTCGA
** * * * *
344727 TGCTACAATGTGGTTTATACGCCCTCGAGCTGAAT-GAATTGAACTCGAAAGTCTTCATTGATAA
66 TGCTACAATGCAGTTGATACACCCTCGAGCTGAATGGAATCGAACTCGAAAGTCTTCATTGATAG
* * *
344791 ATAGCCCATCTCGCCTTGAGCTATGCTGTGAATTTGGCTGGGATATAGTTCCTTGTTGCTAAATT
131 ATAGCCCTTCTCGCCTTGAGCTATGCTGTGAATTTGGCTGGGATATAGTTCCTTATTGCTAAATC
344856 GCAGCC
196 GCAGCC
* *
344862 AACCCAGGTCTTTTTCTTGACTTAAAGACCTCAGTTTAAACTTCAACCGAAAAGTAGTTCCTCGA
1 AACCCAGGTCTTCTTCTTGACTTAAAGACCTCAGTTTAAAATTCAACCGAAAAGTAGTTCCTCGA
* * *
344927 TGCTATAATACAGTTGATATACCCTCGAGCTGAATGGAATCGAACTCGAAAGTCTTCATTGATAG
66 TGCTACAATGCAGTTGATACACCCTCGAGCTGAATGGAATCGAACTCGAAAGTCTTCATTGATAG
* * * *
344992 ATAGCCCTTCTCGCCTTGAACTATGCTGTGAATTTGGATGAGATATAGTTCCTTATTACTAAATC
131 ATAGCCCTTCTCGCCTTGAGCTATGCTGTGAATTTGGCTGGGATATAGTTCCTTATTGCTAAATC
345057 GCAGCC
196 GCAGCC
* * * * *
345063 AACCCGGGTCTTATTCTGGACTTAAAGACTTCAGTTTAAAATTCAACC-AGAAAGTAGTTCCTTG
1 AACCCAGGTCTTCTTCTTGACTTAAAGACCTCAGTTTAAAATTCAACCGA-AAAGTAGTTCCTCG
* * * ** *
345127 ATGCTACCATGCAGTTGATACACCCTCGAACTGAATGGAATCGAACTCGAAAGTTTTTGTTGACA
65 ATGCTACAATGCAGTTGATACACCCTCGAGCTGAATGGAATCGAACTCGAAAGTCTTCATTGATA
* * ** ** *
345192 GATAACCCTTCTCGCCTTGAGCTATGCTGTAAATTTTACTGGGATATAACTCGTTATTGCTAAAT
130 GATAGCCCTTCTCGCCTTGAGCTATGCTGTGAATTTGGCTGGGATATAGTTCCTTATTGCTAAAT
345257 CGCAGCC
195 CGCAGCC
* * * *
345264 AACCCATGTCTTCTTCTTGACTTAAAGAACTCGGTTTAAAATTCAACCGGAAAGTAGTTCCTC--
1 AACCCAGGTCTTCTTCTTGACTTAAAGACCTCAGTTTAAAATTCAACCGAAAAGTAGTTCCTCGA
* ** * * ** *
345327 -GC--C-ATGCGGTTGATATGCCCTCAAGCTGAATGGAATCGAACTCGAAAGTTTTTTGTTGACA
66 TGCTACAATGCAGTTGATACACCCTCGAGCTGAATGGAATCGAACTCGAAAG-TCTTCATTGATA
* * *
345388 GTTAGCCTTTCTCGCCTTGAGTTATGCTG
130 GATAGCCCTTCTCGCCTTGAGCTATGCTG
345417 CGAACATTTT
Statistics
Matches: 484, Mismatches: 67, Indels: 12
0.86 0.12 0.02
Matches are distributed among these distances:
195 40 0.08
196 38 0.08
198 2 0.00
200 87 0.18
201 317 0.65
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.31
Consensus pattern (201 bp):
AACCCAGGTCTTCTTCTTGACTTAAAGACCTCAGTTTAAAATTCAACCGAAAAGTAGTTCCTCGA
TGCTACAATGCAGTTGATACACCCTCGAGCTGAATGGAATCGAACTCGAAAGTCTTCATTGATAG
ATAGCCCTTCTCGCCTTGAGCTATGCTGTGAATTTGGCTGGGATATAGTTCCTTATTGCTAAATC
GCAGCC
Found at i:346330 original size:21 final size:21
Alignment explanation
Indices: 346306--346362 Score: 87
Period size: 21 Copynumber: 2.7 Consensus size: 21
346296 GGCTTGATAG
346306 TATCGATACTACTGTTCACGA
1 TATCGATACTACTGTTCACGA
* * *
346327 TATCGATATTACTGTTCATGG
1 TATCGATACTACTGTTCACGA
346348 TATCGATACTACTGT
1 TATCGATACTACTGT
346363 AGCAGTATCA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (21 bp):
TATCGATACTACTGTTCACGA
Found at i:346457 original size:20 final size:21
Alignment explanation
Indices: 346409--346458 Score: 84
Period size: 21 Copynumber: 2.4 Consensus size: 21
346399 TTAGCATCGG
*
346409 TACTGTTCATGGTATTGATAC
1 TACTGTTCATGGTATCGATAC
346430 TACTGTTCATGGTATCGATAC
1 TACTGTTCATGGTATCGATAC
346451 T-CTGTTCA
1 TACTGTTCA
346459 CACAGTATCG
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
20 7 0.25
21 21 0.75
ACGTcount: A:0.22, C:0.18, G:0.18, T:0.42
Consensus pattern (21 bp):
TACTGTTCATGGTATCGATAC
Found at i:346487 original size:20 final size:20
Alignment explanation
Indices: 346475--346522 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
346465 ATCGGTATTT
346475 TTCATACAATATCGATACTA
1 TTCATACAATATCGATACTA
*
346495 TTCATACAATATCTATACTA
1 TTCATACAATATCGATACTA
346515 TTCATACA
1 TTCATACA
346523 GTAAAGTACT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.40, C:0.21, G:0.02, T:0.38
Consensus pattern (20 bp):
TTCATACAATATCGATACTA
Found at i:349262 original size:20 final size:20
Alignment explanation
Indices: 349237--349289 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
349227 TCGATACTAC
*
349237 TATTCACACAGTATC-GATAG
1 TATTCATACAGTATCAG-TAG
* *
349257 TATTCATACAATATCAGTAT
1 TATTCATACAGTATCAGTAG
349277 TATTCATACAGTA
1 TATTCATACAGTA
349290 CAATACTATT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 27 0.96
21 1 0.04
ACGTcount: A:0.38, C:0.17, G:0.09, T:0.36
Consensus pattern (20 bp):
TATTCATACAGTATCAGTAG
Found at i:354180 original size:17 final size:17
Alignment explanation
Indices: 354149--354187 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
354139 AATTTACAAT
354149 TAATT-TAAATAATATC
1 TAATTATAAATAATATC
*
354165 TAATTATAAATTATATC
1 TAATTATAAATAATATC
354182 TAATTA
1 TAATTA
354188 ATTTGATTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 5 0.24
17 16 0.76
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (17 bp):
TAATTATAAATAATATC
Found at i:354316 original size:9 final size:9
Alignment explanation
Indices: 354302--354327 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
354292 TATATTTAAA
354302 GGTTAATTC
1 GGTTAATTC
354311 GGTTAATTC
1 GGTTAATTC
354320 GGTTAATT
1 GGTTAATT
354328 AACCGATTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.23, C:0.08, G:0.23, T:0.46
Consensus pattern (9 bp):
GGTTAATTC
Found at i:356459 original size:6 final size:6
Alignment explanation
Indices: 356438--356505 Score: 77
Period size: 6 Copynumber: 11.7 Consensus size: 6
356428 AAATTAATAT
* *
356438 ATTAT- ATTAT- ATTATA ATTATA ATTATA ATTATA ATAATA ATAATA
1 ATTATA ATTATA ATTATA ATTATA ATTATA ATTATA ATTATA ATTATA
* * *
356484 ATAATA ATTATT ATTATT ATTA
1 ATTATA ATTATA ATTATA ATTA
356506 AGTGTGTTTA
Statistics
Matches: 59, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
5 10 0.17
6 49 0.83
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (6 bp):
ATTATA
Found at i:356477 original size:3 final size:3
Alignment explanation
Indices: 356451--356491 Score: 55
Period size: 3 Copynumber: 13.7 Consensus size: 3
356441 ATATTATATT
* * *
356451 ATA ATT ATA ATT ATA ATT ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
356492 TATTATTATT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (3 bp):
ATA
Found at i:358861 original size:38 final size:38
Alignment explanation
Indices: 358810--359105 Score: 263
Period size: 38 Copynumber: 7.7 Consensus size: 38
358800 ATGAAAATAT
*
358810 TATATATA-TTTAAAAAATGTTTTCAAAATCATATATTA
1 TATATATATTTTCAAAAATGTTTTCAAAA-CATATATTA
* * *
358848 TATATAT-TTTTAAAAAAAATATTTTTAAAAC-TATA-TA
1 TATATATATTTT--CAAAAATGTTTTCAAAACATATATTA
* ** *
358885 TTATATATACTTTCAAAAACATTTTAAAAAC-TATA-TA
1 -TATATATATTTTCAAAAATGTTTTCAAAACATATATTA
*
358922 T-TATATATATTTCAAAAATATTTTCAAAAAAAACTATATATTA
1 TATATATAT-TTTCAAAAATGTTTTC----AAAAC-ATATATTA
* *
358965 TATATATGTTTTC-AAAATGTTTTCAAAAC-TATATAA
1 TATATATATTTTCAAAAATGTTTTCAAAACATATATTA
*
359001 TATATATATTTTCAAAAATCGTTTTCAAAAC-TATATAA
1 TATATATATTTTCAAAAAT-GTTTTCAAAACATATATTA
* *
359039 TATATTTATTTTCAAAAATCGTTTTCAAAAC-TATATAA
1 TATATATATTTTCAAAAAT-GTTTTCAAAACATATATTA
*
359077 TATATTTATTTTCAAAAATCGTTTTCAAA
1 TATATATATTTTCAAAAAT-GTTTTCAAA
359106 TTTTCAAAAA
Statistics
Matches: 228, Mismatches: 14, Indels: 32
0.83 0.05 0.12
Matches are distributed among these distances:
35 6 0.03
36 33 0.14
37 28 0.12
38 110 0.48
39 4 0.02
40 20 0.09
42 14 0.06
43 7 0.03
44 6 0.03
ACGTcount: A:0.46, C:0.08, G:0.02, T:0.44
Consensus pattern (38 bp):
TATATATATTTTCAAAAATGTTTTCAAAACATATATTA
Found at i:358887 original size:76 final size:75
Alignment explanation
Indices: 358806--359094 Score: 293
Period size: 77 Copynumber: 3.8 Consensus size: 75
358796 GTAAATGAAA
*
358806 ATATTATATATA-TTTAAAAAATGTTTTCAAAA-TCATATATTATATATATTTTTAAAAAAAATA
1 ATATTATATATATTTTCAAAAATGTTTTCAAAACT-ATATATTATATATATTTTT--AAAAAATA
*
358869 TTTTTAAAACTAT
63 TTTTAAAAACTAT
* ** * *
358882 ATATTATATATACTTTCAAAAACATTTTAAAAACTATATATTATATATA--TTTCAAAAATATTT
1 ATATTATATATATTTTCAAAAATGTTTTCAAAACTATATATTATATATATTTTTAAAAAATATTT
358945 TCAAAAAAAACTAT
66 T----AAAAACTAT
* * *
358959 ATATTATATATATGTTTTC-AAAATGTTTTCAAAACTATATAATATATATA-TTTTCAAAAATCG
1 ATATTATATATA--TTTTCAAAAATGTTTTCAAAACTATATATTATATATATTTTTAAAAAAT-A
*
359022 TTTTCAAAACTAT
63 TTTTAAAAACTAT
* * * * *
359035 ATAATATATTTATTTTCAAAAATCGTTTTCAAAACTATATAATATATTTATTTTCAAAAA
1 ATATTATATATATTTTCAAAAAT-GTTTTCAAAACTATATATTATATATATTTTTAAAAA
359095 TCGTTTTCAA
Statistics
Matches: 182, Mismatches: 18, Indels: 25
0.81 0.08 0.11
Matches are distributed among these distances:
73 11 0.06
74 5 0.03
75 8 0.04
76 55 0.30
77 57 0.31
78 28 0.15
79 14 0.08
80 4 0.02
ACGTcount: A:0.47, C:0.08, G:0.02, T:0.44
Consensus pattern (75 bp):
ATATTATATATATTTTCAAAAATGTTTTCAAAACTATATATTATATATATTTTTAAAAAATATTT
TAAAAACTAT
Found at i:359095 original size:76 final size:74
Alignment explanation
Indices: 358810--359105 Score: 312
Period size: 76 Copynumber: 3.9 Consensus size: 74
358800 ATGAAAATAT
* * *
358810 TATATATA-TTTAAAAAATGTTTTCAAAA-TCATATATTATATATATTTTTAAAAAAAATATTTT
1 TATATATATTTTCAAAAATGTTTTCAAAACT-ATATAATATATATA-TTTT--CAAAAATATTTT
* *
358873 TAAAACTATATAT
62 CAAAACTATATAA
* ** * *
358886 TATATATACTTTCAAAAACATTTTAAAAACTATATATTATATATA-TTTCAAAAATATTTTCAAA
1 TATATATATTTTCAAAAATGTTTTCAAAACTATATAATATATATATTTTCAAAAATATTTTC---
358950 AAAAACTATATATTA
63 -AAAACTATATA--A
* *
358965 TATATATGTTTTC-AAAATGTTTTCAAAACTATATAATATATATATTTTCAAAAATCGTTTTCAA
1 TATATATATTTTCAAAAATGTTTTCAAAACTATATAATATATATATTTTCAAAAAT-ATTTTCAA
359029 AACTATATAA
65 AACTATATAA
* * *
359039 TATATTTATTTTCAAAAATCGTTTTCAAAACTATATAATATATTTATTTTCAAAAATCGTTTTCA
1 TATATATATTTTCAAAAAT-GTTTTCAAAACTATATAATATATATATTTTCAAAAAT-ATTTTCA
359104 AA
64 AA
359106 TTTTCAAAAA
Statistics
Matches: 191, Mismatches: 17, Indels: 24
0.82 0.07 0.10
Matches are distributed among these distances:
73 11 0.06
74 12 0.06
75 8 0.04
76 65 0.34
77 41 0.21
78 28 0.15
79 21 0.11
80 5 0.03
ACGTcount: A:0.46, C:0.08, G:0.02, T:0.44
Consensus pattern (74 bp):
TATATATATTTTCAAAAATGTTTTCAAAACTATATAATATATATATTTTCAAAAATATTTTCAAA
ACTATATAA
Found at i:359150 original size:2 final size:2
Alignment explanation
Indices: 359131--359178 Score: 75
Period size: 2 Copynumber: 25.5 Consensus size: 2
359121 TTTTTAAAAC
359131 TA TA -A TA T- TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
359170 TA TA TA TA T
1 TA TA TA TA T
359179 TTAAAAATCA
Statistics
Matches: 43, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
1 3 0.07
2 40 0.93
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:359203 original size:37 final size:37
Alignment explanation
Indices: 359162--359319 Score: 139
Period size: 37 Copynumber: 4.2 Consensus size: 37
359152 TATATATATA
359162 TATATATATATATATATTT-AAAAATCATTTTC-AAAAC
1 TATATATATATATAT-TTTCAAAAAT-ATTTTCAAAAAC
** *
359199 TATATA-ATATATATTTTCAAAAATCGATTTTTTTAAAAG
1 TATATATATATATATTTTCAAAAAT--A-TTTTCAAAAAC
* * *
359238 TATATAT-TATATGCTTTTC-AAACTGTTTTCTAAAAAC
1 TATATATATATAT-ATTTTCAAAAATATTTTC-AAAAAC
*
359275 TATATAT-TATATTTTTTCAAAAATATTTTCAAAAAC
1 TATATATATATATATTTTCAAAAATATTTTCAAAAAC
359311 TATACTATA
1 TATA-TATA
359320 CTAAATAAGC
Statistics
Matches: 99, Mismatches: 12, Indels: 19
0.76 0.09 0.15
Matches are distributed among these distances:
35 3 0.03
36 33 0.33
37 35 0.35
38 4 0.04
39 19 0.19
40 5 0.05
ACGTcount: A:0.43, C:0.09, G:0.03, T:0.46
Consensus pattern (37 bp):
TATATATATATATATTTTCAAAAATATTTTCAAAAAC
Found at i:359221 original size:36 final size:36
Alignment explanation
Indices: 359162--359314 Score: 132
Period size: 36 Copynumber: 4.1 Consensus size: 36
359152 TATATATATA
359162 TATATATATATATATATTT-AAAAATCATTTTC-AAAAC
1 TATATA-ATATATAT-TTTCAAAAAT-ATTTTCAAAAAC
** *
359199 TATATAATATATATTTTCAAAAATCGATTTTTTTAAAAG
1 TATATAATATATATTTTCAAAAAT--A-TTTTCAAAAAC
* * * *
359238 TATATATTATATGCTTTTC-AAACTGTTTTCTAAAAAC
1 TATATAATATAT-ATTTTCAAAAATATTTTC-AAAAAC
* *
359275 TATATATTATATTTTTTCAAAAATATTTTCAAAAAC
1 TATATAATATATATTTTCAAAAATATTTTCAAAAAC
359311 TATA
1 TATA
359315 CTATACTAAA
Statistics
Matches: 96, Mismatches: 13, Indels: 15
0.77 0.10 0.12
Matches are distributed among these distances:
35 3 0.03
36 33 0.34
37 32 0.33
38 4 0.04
39 19 0.20
40 5 0.05
ACGTcount: A:0.43, C:0.08, G:0.03, T:0.46
Consensus pattern (36 bp):
TATATAATATATATTTTCAAAAATATTTTCAAAAAC
Found at i:363299 original size:40 final size:40
Alignment explanation
Indices: 363254--363333 Score: 108
Period size: 40 Copynumber: 2.0 Consensus size: 40
363244 AAACACTTTA
*
363254 TTTTTTAT-TAAAATAATATAAATTTGATTGGAAGAGAATTG
1 TTTTTAATGTAAAATAA-AT-AATTTGATTGGAAGAGAATTG
* *
363295 TTTTTAATGTAATATAAATAATTTGATTGGATGAGAATT
1 TTTTTAATGTAAAATAAATAATTTGATTGGAAGAGAATT
363334 ATTATTTGAT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
40 19 0.54
41 9 0.26
42 7 0.20
ACGTcount: A:0.40, C:0.00, G:0.15, T:0.45
Consensus pattern (40 bp):
TTTTTAATGTAAAATAAATAATTTGATTGGAAGAGAATTG
Found at i:365091 original size:5 final size:5
Alignment explanation
Indices: 365081--365106 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
365071 AGAGAGATAG
365081 TTTTA TTTTA TTTTA TTTTA TTTTA T
1 TTTTA TTTTA TTTTA TTTTA TTTTA T
365107 ATAGTAGGAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:367962 original size:16 final size:16
Alignment explanation
Indices: 367937--367969 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
367927 TAATAAATAA
*
367937 ACGAATATAAACGAAC
1 ACGAACATAAACGAAC
367953 ACGAACATAAACGAAC
1 ACGAACATAAACGAAC
367969 A
1 A
367970 ATTTTTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.58, C:0.21, G:0.12, T:0.09
Consensus pattern (16 bp):
ACGAACATAAACGAAC
Found at i:368049 original size:10 final size:10
Alignment explanation
Indices: 368034--368076 Score: 58
Period size: 10 Copynumber: 4.7 Consensus size: 10
368024 CATTTAATAA
368034 ATAAACGAAC
1 ATAAACGAAC
368044 ATAAACGAAC
1 ATAAACGAAC
368054 ----ACGAAC
1 ATAAACGAAC
368060 ATAAACGAAC
1 ATAAACGAAC
368070 ATAAACG
1 ATAAACG
368077 TTGGAGACCC
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
6 6 0.21
10 23 0.79
ACGTcount: A:0.58, C:0.21, G:0.12, T:0.09
Consensus pattern (10 bp):
ATAAACGAAC
Found at i:368059 original size:16 final size:16
Alignment explanation
Indices: 368038--368070 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
368028 TAATAAATAA
368038 ACGAACATAAACGAAC
1 ACGAACATAAACGAAC
368054 ACGAACATAAACGAAC
1 ACGAACATAAACGAAC
368070 A
1 A
368071 TAAACGTTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.58, C:0.24, G:0.12, T:0.06
Consensus pattern (16 bp):
ACGAACATAAACGAAC
Found at i:369187 original size:14 final size:14
Alignment explanation
Indices: 369170--369225 Score: 66
Period size: 14 Copynumber: 4.3 Consensus size: 14
369160 AATGAACATA
369170 AACGAACATAACCG
1 AACGAACATAACCG
369184 AACGAACATAA-C-
1 AACGAACATAACCG
369196 --CGAACATAACCG
1 AACGAACATAACCG
* *
369208 AACAAATATAACCG
1 AACGAACATAACCG
369222 AACG
1 AACG
369226 TTCACGAACG
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
10 9 0.26
11 1 0.03
13 1 0.03
14 24 0.69
ACGTcount: A:0.52, C:0.27, G:0.12, T:0.09
Consensus pattern (14 bp):
AACGAACATAACCG
Found at i:369190 original size:24 final size:24
Alignment explanation
Indices: 369163--369224 Score: 97
Period size: 24 Copynumber: 2.6 Consensus size: 24
369153 ATAAATGAAT
*
369163 GAACATAAACGAACATAACCGAAC
1 GAACATAACCGAACATAACCGAAC
369187 GAACATAACCGAACATAACCGAAC
1 GAACATAACCGAACATAACCGAAC
* *
369211 AAATATAACCGAAC
1 GAACATAACCGAAC
369225 GTTCACGAAC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.53, C:0.26, G:0.11, T:0.10
Consensus pattern (24 bp):
GAACATAACCGAACATAACCGAAC
Found at i:372096 original size:13 final size:13
Alignment explanation
Indices: 372078--372103 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
372068 AATTTATTAC
372078 TTTTAATAATTTA
1 TTTTAATAATTTA
372091 TTTTAATAATTTA
1 TTTTAATAATTTA
372104 AAAATAAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
TTTTAATAATTTA
Found at i:372213 original size:26 final size:25
Alignment explanation
Indices: 372183--372274 Score: 62
Period size: 26 Copynumber: 3.5 Consensus size: 25
372173 TTTATATTTT
372183 TTATAGTTTAAATTGATATAATTCA
1 TTATAGTTTAAATTGATATAATTCA
* * * *
372208 TGTATAATAATAATATT--TTTGAATTTA
1 T-TATAGT-TTAA-ATTGATAT-AATTCA
*
372235 TTATAGTTTAAATTGATATGATTCA
1 TTATAGTTTAAATTGATATAATTCA
*
372260 TATATAAGTGTAAAT
1 T-TAT-AGTTTAAAT
372275 ATAATCTAAA
Statistics
Matches: 49, Mismatches: 10, Indels: 14
0.67 0.14 0.19
Matches are distributed among these distances:
24 3 0.06
25 9 0.18
26 17 0.35
27 17 0.35
28 3 0.06
ACGTcount: A:0.40, C:0.02, G:0.10, T:0.48
Consensus pattern (25 bp):
TTATAGTTTAAATTGATATAATTCA
Found at i:373574 original size:25 final size:25
Alignment explanation
Indices: 373526--373574 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
373516 AAGTTAATCA
* *
373526 AATAAAACAATAGAAAATAGAAAAT
1 AATAAAAAAATAGAAAATAAAAAAT
* *
373551 AATAAAAAAATATAATATAAAAAA
1 AATAAAAAAATAGAAAATAAAAAA
373575 ACACAAGTCC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.76, C:0.02, G:0.04, T:0.18
Consensus pattern (25 bp):
AATAAAAAAATAGAAAATAAAAAAT
Found at i:376364 original size:2 final size:2
Alignment explanation
Indices: 376357--376406 Score: 100
Period size: 2 Copynumber: 25.0 Consensus size: 2
376347 AGGATTCAAA
376357 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
376399 AT AT AT AT
1 AT AT AT AT
376407 TAAATTGACA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:378224 original size:146 final size:145
Alignment explanation
Indices: 377732--378266 Score: 472
Period size: 145 Copynumber: 3.7 Consensus size: 145
377722 TCTCGTCGTT
* * * * * *
377732 GATCAGAATCTCCGATCACCATTCCGAACGGTCAAAAGTTGCGC-AAGACCATCACGAACAACAT
1 GATCGGAATCTCCGATCAACATTCCGAACAGTCAAAAGTTGCGCGATG-TCAACACGAACAACAT
* * * *
377796 ACTGAAAATTCAGGACGATCAAACGGTGGACGGCGGTGGATCGGAGAAAATAAGCC-GAACGGTT
65 ACTGAAAATTCAGGACGATCAGACGGTGGACGGCGGTGAATCGGAGAAAAAAATCCAG-ACGGTT
* * *
377860 TTTGGTCTCTTGCCTGC
129 TTTGGCCTCTCGCCGGC
* * * * * *
377877 GATCGGAATCTCCAATTAACATTCCGAACGGTCAAAAGTTGCGCGA-GACTATCGCGAACAACAT
1 GATCGGAATCTCCGATCAACATTCCGAACAGTCAAAAGTTGCGCGATGTC-AACACGAACAACAT
* * * * * *
377941 ACTGAAAATTCAGGACGATCAGACGGTGGATGACGG-CAGATCGGAGAAAATAAGTCGA-ATGGT
65 ACTGAAAATTCAGGACGATCAGACGGTGGACGGCGGTGA-ATCGGAGAAAA-AAATCCAGACGGT
* * **
378004 TTTTAGCCTTTTTCCGGC
128 TTTTGGCCTCTCGCCGGC
* * * * * ** * *
378022 GATCGGGATCTCCGATCAATACTT-CAAACAGTGAAAAGTTGTGTAATGTAAACACGAACAGCAT
1 GATCGGAATCTCCGATCAACA-TTCCGAACAGTCAAAAGTTGCGCGATGTCAACACGAACAACAT
* * * * *
378086 ACTGAAATTTCATGACGAT-AGGACGGTAGACGGTGGTGAATCGGAGAAAACAAATCCAGACGAT
65 ACTGAAAATTCAGGACGATCA-GACGGTGGACGGCGGTGAATCGGAGAAAA-AAATCCAGACGGT
* *
378150 ATTTGGCCTCTCGCCGGT
128 TTTTGGCCTCTCGCCGGC
* * *
378168 GATCGGAACCTCCGATCAATATTCCGAACAGTCAAAAGTTGCGCGATGTCAACACGAACAGCATA
1 GATCGGAATCTCCGATCAACATTCCGAACAGTCAAAAGTTGCGCGATGTCAACACGAACAACATA
* * * *
378233 CTGAAATTTTAGGACAATCGGACGGTGGCACGGC
66 CTGAAAATTCAGGACGATCAGACGGTGG-ACGGC
378267 AGCGCAGTAA
Statistics
Matches: 309, Mismatches: 68, Indels: 24
0.77 0.17 0.06
Matches are distributed among these distances:
144 2 0.01
145 205 0.66
146 98 0.32
147 4 0.01
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.21
Consensus pattern (145 bp):
GATCGGAATCTCCGATCAACATTCCGAACAGTCAAAAGTTGCGCGATGTCAACACGAACAACATA
CTGAAAATTCAGGACGATCAGACGGTGGACGGCGGTGAATCGGAGAAAAAAATCCAGACGGTTTT
TGGCCTCTCGCCGGC
Done.