Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009282.1 Hibiscus syriacus cultivar Beakdansim tig00112969_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71792

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3624--3686
18
3.5
17
76
6
54
50
1
1
46
1.20
4235--4276
14
2.9
14
89
3
57
52
9
2
35
1.47
5164--5201
19
2.0
19
100
0
76
10
5
15
68
1.36
9430--9482
21
2.5
21
81
0
70
20
22
20
35
1.96
9491--9604
20
5.7
20
86
0
156
28
24
20
26
1.99
9779--9843
22
3.0
22
97
0
121
27
40
13
18
1.89
10178--10215
19
2.0
20
94
5
69
47
21
21
10
1.80
10423--11024
300
2.0
300
97
0
1125
29
17
20
32
1.96
12301--12350
18
2.8
18
100
0
100
32
20
6
42
1.76
12568--12621
20
2.7
21
85
5
67
20
14
25
38
1.91
13124--13199
21
3.6
22
77
12
63
22
38
15
23
1.93
13124--13220
21
4.7
20
75
8
61
22
36
17
23
1.95
14769--14822
20
2.7
20
80
5
65
44
27
16
11
1.82
14865--14995
20
6.8
20
80
12
150
26
19
20
32
1.97
14816--14995
94
1.9
93
85
3
245
25
20
21
32
1.97
15166--15200
18
1.9
18
94
0
61
17
2
25
54
1.57
17447--17500
24
2.2
24
90
0
81
40
18
18
22
1.91
17463--17514
24
2.2
24
82
0
59
36
21
19
23
1.95
18367--18425
20
3.0
20
87
0
82
32
15
22
30
1.94
18330--18429
40
2.5
40
80
0
110
31
17
23
29
1.96
18445--18490
21
2.2
21
92
0
74
36
19
26
17
1.94
19128--19161
14
2.3
15
90
5
52
61
0
0
38
0.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33322--33367
16
3.1
16
79
17
55
41
0
0
58
0.98
36424--36498
37
2.1
37
94
2
134
41
14
10
33
1.81
40961--40990
15
2.0
15
100
0
60
13
46
26
13
1.80
41413--41487
37
2.1
37
94
2
134
41
14
10
33
1.81
46441--46521
21
3.9
21
76
0
81
35
1
16
46
1.54
60146--60225
38
2.1
38
86
4
108
37
13
17
31
1.89
60236--60309
14
5.3
14
93
0
130
6
12
28
52
1.64
60236--60310
28
2.7
28
100
0
150
6
12
28
53
1.63
61169--61233
23
2.8
23
92
0
103
35
23
18
23
1.96
61457--61495
16
2.4
16
100
0
78
7
12
23
56
1.62
70774--70859
43
2.0
43
93
0
145
48
6
11
32
1.66

Tables:   1

The End!