genome.fa.s9284.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009284.1 Hibiscus syriacus cultivar Beakdansim tig00112971_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  142908

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2073--2249	59	3.1	58	76	12	170	35	20	2	41	1.67
6275--6386	59	1.9	58	96	1	206	40	10	15	33	1.82
9025--9078	27	2.0	27	88	0	81	20	24	5	50	1.69
13960--14017	29	2.0	30	82	3	73	48	3	12	36	1.57
14593--14738	6	23.5	6	71	17	77	76	2	4	16	1.05
14598--14669	3	25.3	3	74	16	55	76	1	1	20	0.94
14582--14824	100	2.4	98	75	18	227	74	2	6	16	1.16
15831--15859	14	2.1	14	100	0	58	0	6	44	48	1.29
28901--29015	58	2.0	58	92	0	194	30	7	20	40	1.81
29890--30652	248	3.0	248	83	8	955	41	19	12	26	1.86
32161--32207	23	2.0	23	100	0	94	51	14	4	29	1.62
34962--34992	2	15.5	2	100	0	62	51	0	0	48	1.00
35119--35163	20	2.3	20	88	3	65	48	11	4	35	1.59
35122--35161	20	2.0	20	95	0	71	45	12	5	37	1.64
35175--35214	20	2.0	21	90	5	64	45	12	5	37	1.64
35228--35266	20	2.0	20	89	0	60	41	15	5	38	1.69
35120--35267	53	2.8	52	95	3	271	47	12	5	34	1.64
37894--37938	20	2.3	20	88	3	65	48	11	4	35	1.59
37897--37936	20	2.0	20	95	0	71	45	12	5	37	1.64
37950--37989	20	2.0	21	90	5	64	45	15	5	35	1.68
38003--38041	20	2.0	20	94	0	69	41	17	5	35	1.72
37895--38042	53	2.8	52	95	3	271	47	13	5	33	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45508--45576	22	3.0	22	93	4	111	26	0	23	50	1.49
45506--45578	24	3.0	24	95	0	137	26	0	23	50	1.49
45504--45580	26	3.0	26	90	7	131	25	0	23	50	1.49
45481--45518	2	19.0	2	100	0	76	50	0	0	50	1.00
65104--65143	18	2.2	18	86	8	55	20	20	20	40	1.92
65269--65308	18	2.2	18	86	8	55	20	20	20	40	1.92
65102--65415	165	1.9	165	92	1	522	23	21	18	35	1.95
67771--67824	22	2.4	24	73	17	62	59	11	0	29	1.32
67810--67850	14	2.8	15	79	17	50	63	4	0	31	1.15
67813--67850	15	2.6	15	84	16	53	68	2	0	28	1.03
69250--69289	20	2.0	20	90	0	62	40	10	15	35	1.80
71189--71278	47	1.9	47	86	4	128	36	24	14	24	1.93
72179--72210	16	2.0	16	100	0	64	31	18	12	37	1.88
79673--79742	34	2.1	32	86	5	95	22	30	15	31	1.95
80025--80066	21	2.0	21	95	0	75	26	28	21	23	1.99
80219--80309	31	3.0	31	95	3	159	43	16	6	32	1.74
80468--80515	23	2.1	23	96	0	87	33	2	8	56	1.41
82504--82573	34	2.1	32	86	5	95	22	30	15	31	1.95
82850--82891	21	2.0	21	95	0	75	26	28	21	23	1.99
82997--83063	19	3.5	19	91	0	89	35	13	10	40	1.79
83128--83218	31	3.0	31	95	3	159	43	16	6	32	1.74
83793--83836	20	2.1	21	83	4	54	56	4	13	25	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87466--87504	20	1.9	21	89	5	62	20	38	25	15	1.92
94766--94800	2	17.5	2	100	0	70	51	0	0	48	1.00
94816--94881	28	2.4	28	83	16	84	42	4	4	48	1.44
94844--95126	39	7.1	39	82	8	340	42	4	5	48	1.45
94844--95126	78	3.6	78	90	6	412	42	4	5	48	1.45
95713--95767	15	3.4	16	82	7	67	27	32	29	10	1.91
96097--96431	167	2.0	168	98	1	647	48	22	20	8	1.77
97058--97116	22	2.7	22	80	15	68	22	5	1	71	1.15
97146--97188	17	2.4	18	80	7	52	11	9	2	76	1.10
97163--97223	25	2.4	24	67	8	50	14	13	4	67	1.39
97543--97573	13	2.4	13	100	0	62	22	54	16	6	1.64
97834--97955	59	2.1	59	86	6	167	32	9	17	40	1.82
102203--102247	21	2.1	21	100	0	90	37	28	20	13	1.90
102261--102312	18	2.9	18	97	0	95	23	32	26	17	1.96
104221--104294	31	2.4	30	85	12	98	44	1	17	36	1.57
106922--106968	3	16.0	3	95	4	87	34	0	0	65	0.93
110671--110715	23	2.0	23	82	8	56	44	2	6	46	1.42
114856--114917	26	2.4	26	91	0	106	16	14	29	40	1.88
119977--120030	22	2.4	22	76	14	56	9	68	3	18	1.32
139403--139473	2	35.5	2	100	0	142	49	0	0	50	1.00

Tables:   1

The End!