genome.fa.s9285.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009285.1 Hibiscus syriacus cultivar Beakdansim tig00112973_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80278

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4090--4151	18	3.5	19	73	20	62	54	1	0	43	1.09
6546--6580	16	2.2	16	90	10	54	48	0	8	42	1.33
14064--14312	124	2.0	124	100	0	498	30	11	19	38	1.87
18493--18525	17	1.9	17	88	11	50	66	6	0	27	1.15
20713--20762	21	2.3	21	87	12	75	20	0	36	44	1.52
22501--22563	6	10.5	6	79	6	56	12	20	6	60	1.54
22501--22563	24	2.6	24	82	0	72	12	20	6	60	1.54
23788--24314	90	5.9	90	89	1	770	27	25	18	28	1.98
36065--36106	15	2.8	15	100	0	84	30	7	0	61	1.22
36203--36272	31	2.3	31	84	0	95	27	30	14	28	1.95
40955--41343	133	2.9	130	83	7	428	20	17	24	36	1.94
42330--42401	9	7.2	10	74	10	51	4	29	0	66	1.10
42367--42401	3	12.3	3	93	6	56	0	31	0	68	0.90
43549--43591	15	2.9	15	100	0	86	41	4	0	53	1.21
51093--51130	16	2.4	16	95	0	67	21	28	21	28	1.98
52357--52397	18	2.3	18	84	12	50	36	0	4	58	1.20
52473--52538	21	3.2	20	78	4	78	37	16	27	18	1.92
52524--52601	41	1.9	41	83	0	102	39	20	16	23	1.92
52569--52621	20	2.7	20	93	0	88	28	28	18	24	1.98
52809--52852	22	2.0	22	95	0	79	20	45	15	18	1.85
53116--53153	20	1.9	20	88	0	58	13	15	21	50	1.78
54472--54516	18	2.5	18	85	0	63	26	42	15	15	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54983--55048	20	3.4	19	77	6	69	40	24	19	15	1.90
55038--55101	14	4.4	14	80	16	76	50	25	15	9	1.74
55022--55112	32	2.8	33	91	3	148	49	23	16	10	1.77
55033--55112	14	4.8	18	66	27	61	51	22	16	10	1.74
55129--55186	14	3.9	14	77	16	62	10	17	24	48	1.78
55124--55202	32	2.4	33	93	2	133	10	18	22	48	1.78
55187--55241	20	2.8	19	89	5	83	14	25	23	36	1.93
57251--57327	14	4.7	15	74	22	59	45	19	22	12	1.84
57261--57327	18	3.8	19	81	18	92	46	17	22	13	1.83
57353--57403	20	2.5	20	93	0	84	19	23	23	33	1.97
58460--58518	24	2.5	24	82	0	73	28	16	18	35	1.93
58693--58717	12	2.1	12	100	0	50	72	0	28	0	0.86
61017--61111	19	5.5	19	68	23	84	44	18	25	11	1.84
61017--61107	33	2.8	33	98	0	173	43	18	25	12	1.84
61107--61149	20	2.2	20	87	4	61	16	18	23	41	1.89
61135--61168	14	2.4	14	85	0	50	8	23	20	47	1.78
61290--61326	14	2.6	14	91	0	65	45	24	0	29	1.53
62685--62751	21	3.2	21	68	4	55	19	20	35	23	1.95
62685--62807	42	2.9	41	80	9	106	21	17	37	22	1.94
64817--64871	20	2.7	20	80	8	67	41	21	21	14	1.89
64837--64931	33	2.8	33	88	1	136	38	27	22	11	1.88
64903--64950	20	2.5	20	89	3	71	45	22	16	14	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64956--65000	19	2.4	19	92	0	72	8	15	26	48	1.74
65553--65646	20	4.7	20	77	2	80	23	17	24	35	1.95
65635--65710	21	3.7	20	77	5	80	17	22	18	42	1.89
65635--65730	41	2.3	41	92	3	122	19	21	16	41	1.90
65654--65720	20	3.3	20	75	4	80	17	20	17	43	1.88
66667--66693	2	13.5	2	100	0	54	0	0	48	51	1.00
72953--73049	48	2.0	48	93	0	167	24	11	18	45	1.82
75025--75072	25	1.9	24	83	8	60	52	6	4	37	1.46
77412--77474	26	2.4	26	94	5	110	55	3	11	30	1.50
78219--78251	2	16.5	2	100	0	66	51	0	0	48	1.00

Tables:   1

The End!