genome.fa.s9286.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009286.1 Hibiscus syriacus cultivar Beakdansim tig00112977_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116065

Tables:   1   

This is table  1  of  1  ( 85 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4247--4305	31	1.9	31	96	0	109	42	6	8	42	1.61
8598--8632	17	2.0	18	94	5	63	20	17	22	40	1.92
11365--11432	29	2.3	30	89	2	102	50	35	5	8	1.58
19110--19191	36	2.3	36	97	0	155	35	28	14	21	1.93
20966--21015	13	3.8	13	87	12	68	36	0	0	64	0.94
20964--21019	3	18.3	3	76	23	55	37	0	0	62	0.95
21639--21687	24	2.0	24	100	0	98	16	10	28	44	1.80
22380--22412	4	8.2	4	100	0	66	24	0	0	75	0.80
22537--22627	22	4.3	23	78	13	81	40	2	0	57	1.11
22546--22627	40	2.0	41	97	2	157	41	2	0	56	1.13
22537--22630	40	2.2	42	90	9	156	41	2	0	56	1.11
22597--22658	29	2.1	28	80	13	72	30	3	1	64	1.19
25269--25310	7	6.0	7	86	8	59	14	16	11	57	1.66
25269--25310	15	3.0	14	86	10	59	14	16	11	57	1.66
25388--25426	20	2.0	20	84	0	51	17	10	7	64	1.48
26411--26594	91	2.0	91	92	0	305	47	9	22	21	1.79
28234--28291	7	7.7	7	76	19	55	84	0	15	0	0.62
28233--28285	8	6.6	8	85	8	72	84	0	15	0	0.61
28231--28291	23	2.7	22	85	7	86	85	0	14	0	0.60
32414--32516	54	1.9	54	89	0	161	35	12	23	28	1.91
33281--33962	113	5.9	113	83	4	787	37	14	19	28	1.91
33295--34053	226	3.3	233	84	5	914	38	14	19	27	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34289--34343	3	18.3	3	82	14	69	34	0	1	63	1.05
35822--35909	22	4.2	21	76	14	83	40	2	0	56	1.11
35828--35908	40	2.0	40	100	0	162	41	2	0	55	1.13
35878--35940	30	2.1	29	82	11	74	28	3	1	66	1.16
38147--38173	3	9.0	3	100	0	54	66	0	0	33	0.92
43472--43575	3	34.3	3	90	1	163	35	2	0	61	1.11
44120--44155	16	2.3	15	90	4	54	69	2	27	0	1.02
44972--45013	19	2.2	20	86	4	59	38	2	2	57	1.25
46309--46346	17	2.3	17	86	4	51	31	7	2	57	1.41
56660--56704	16	2.8	16	83	10	56	28	8	6	55	1.56
57449--58090	84	7.7	84	95	2	1150	27	14	22	35	1.93
58742--59384	114	5.6	113	86	6	850	37	12	20	29	1.90
58742--59384	230	2.8	230	92	2	1032	37	12	20	29	1.90
59521--59614	3	31.3	3	93	0	161	34	3	0	62	1.11
59610--59641	11	2.8	11	95	4	55	56	0	0	43	0.99
60173--60208	16	2.3	15	90	4	54	69	2	27	0	1.02
61028--61068	20	2.0	21	85	4	57	36	2	2	58	1.24
64299--64331	17	2.0	17	94	5	59	3	12	24	60	1.46
64468--64560	46	2.0	46	100	0	186	31	25	2	40	1.68
69922--70018	37	2.6	37	86	0	140	42	13	12	31	1.81
70573--70673	24	4.3	24	70	17	86	27	5	0	65	1.22
70634--70681	24	1.9	26	91	8	82	29	0	2	68	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70696--70735	11	3.5	11	86	6	53	25	5	5	65	1.34
71122--71146	2	12.5	2	100	0	50	48	0	0	52	1.00
71294--71361	14	4.7	15	71	18	56	19	4	0	76	0.95
71230--71381	81	1.9	80	82	7	195	19	5	3	71	1.19
71313--71407	27	3.3	30	77	15	76	18	7	2	71	1.19
72106--72171	20	3.3	20	97	0	123	27	33	39	0	1.57
75616--75680	20	3.3	19	78	20	62	81	4	12	1	0.91
75606--75680	24	3.0	23	80	9	69	80	5	13	1	0.95
75618--75666	11	4.5	11	78	17	50	81	4	14	0	0.83
75615--75680	13	5.2	12	74	13	53	81	4	12	1	0.90
76282--76337	22	2.5	22	91	0	94	33	23	12	30	1.92
77147--77673	106	5.0	105	84	4	604	34	24	17	23	1.96
77147--77667	206	2.5	208	83	5	617	34	23	17	23	1.96
78402--78506	37	2.8	37	82	5	140	41	12	12	33	1.80
78948--78979	2	16.0	2	100	0	64	50	0	0	50	1.00
79048--79101	2	27.0	2	100	0	108	50	0	0	50	1.00
79171--79216	5	9.4	5	79	11	51	30	0	2	67	1.03
79174--79211	20	1.9	19	89	5	58	28	0	2	68	1.03
79172--79225	25	2.2	24	87	12	76	27	0	1	70	0.98
79172--79222	24	2.0	26	92	7	88	29	0	1	68	1.00
79049--79216	6	32.2	5	76	16	57	32	4	1	61	1.25
79514--79544	2	15.5	2	100	0	62	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79846--79914	14	5.1	13	70	16	50	17	4	1	76	1.02
83010--83077	3	22.0	3	85	5	91	36	0	1	61	1.05
84446--84480	17	1.9	17	88	11	52	37	2	0	60	1.12
95677--95742	1	66.0	1	90	0	105	95	0	4	0	0.27
95678--95742	30	2.2	29	97	2	121	95	0	4	0	0.27
96066--96110	18	2.6	17	89	6	65	31	6	8	53	1.58
96670--97117	50	8.8	51	94	3	773	24	13	23	38	1.91
96669--97114	153	2.9	151	93	2	763	25	13	23	37	1.92
97156--97296	50	2.8	50	100	0	282	24	14	21	39	1.91
96975--97302	182	1.8	182	96	1	613	25	14	22	38	1.91
97939--98573	112	5.6	116	89	6	919	37	15	20	26	1.92
97939--98573	225	2.8	228	89	6	982	37	15	20	26	1.92
98713--98792	3	26.0	3	87	5	115	36	0	1	62	1.03
102276--102314	21	1.9	20	89	5	60	17	25	17	38	1.92
102276--102321	21	2.2	21	84	3	58	21	23	17	36	1.94
102448--102508	20	3.0	20	85	9	79	50	0	4	44	1.23
102971--103010	20	2.0	20	95	0	71	35	7	22	35	1.82
109006--109056	19	2.7	19	82	8	61	37	0	1	60	1.08
111319--111375	29	2.0	29	89	6	89	29	14	17	38	1.89

Tables:   1

The End!