Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009290.1 Hibiscus syriacus cultivar Beakdansim tig00112989_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 385540
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 2 of 2
Found at i:207303 original size:123 final size:123
Alignment explanation
Indices: 207048--207363 Score: 510
Period size: 123 Copynumber: 2.6 Consensus size: 123
207038 GAATTAAGGC
*
207048 AAGGTTGAACAAATTCTTCTCATTATGAACTTCTTC-TCCTTCTTCAGATGAGTTCTACTCATTA
1 AAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTA
* * *
207112 TGAACATTTCTAGAAATGTTGATGCTGATCTATCTCTTTATGTGATAGAGTCATACAA
66 TGAACTTTTCTAGAAAAGTTGATGCTGATCTATCTCCTTATGTGATAGAGTCATACAA
* * * *
207170 AAGGTTGAACAAGTTCTTCTTATTATGAACTTCTTCTTCCTT-TTCAGATAAGTTCTTCTAATTA
1 AAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTA
* *
207234 TGAACTTTCTCTGGAAAAGTTGATGCTGATCTATCTCCTTATGTGATAGAGTCATGCAA
66 TGAACTTT-TCTAGAAAAGTTGATGCTGATCTATCTCCTTATGTGATAGAGTCATACAA
*
207293 AAGGTTGAACAAATTCTTCTCATTATTAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTA
1 AAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTA
207358 TGAACT
66 TGAACT
207364 CTACCTGGCA
Statistics
Matches: 176, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
122 60 0.34
123 90 0.51
124 26 0.15
ACGTcount: A:0.27, C:0.18, G:0.14, T:0.41
Consensus pattern (123 bp):
AAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTA
TGAACTTTTCTAGAAAAGTTGATGCTGATCTATCTCCTTATGTGATAGAGTCATACAA
Found at i:207417 original size:113 final size:113
Alignment explanation
Indices: 207290--207507 Score: 337
Period size: 113 Copynumber: 1.9 Consensus size: 113
207280 TAGAGTCATG
* **
207290 CAAAAGGTTGAACAAATTCTTCTCATTATTAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
1 CAAAAGGTTAAACAAATTCTTCTCATTAAGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
* *
207355 TTATGAACTCTACCTGGCAATGCTGATACATCGAGTGATGAATTTGAA
66 TTATGAACTCTACCTGGAAATGCTAATACATCGAGTGATGAATTTGAA
* * *
207403 CAAAAGGTTAAACAAGTTCTTCTCATTAAGAAGTTCTTCTTCCTTCTTCAGATGAGTTCTTCTTA
1 CAAAAGGTTAAACAAATTCTTCTCATTAAGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
* * *
207468 TTATGAACTTTACCTGGAAATGTTAATCCATCGAGTGATG
66 TTATGAACTCTACCTGGAAATGCTAATACATCGAGTGATG
207508 GATTCAAATC
Statistics
Matches: 94, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
113 94 1.00
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (113 bp):
CAAAAGGTTAAACAAATTCTTCTCATTAAGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
TTATGAACTCTACCTGGAAATGCTAATACATCGAGTGATGAATTTGAA
Found at i:208160 original size:54 final size:54
Alignment explanation
Indices: 208075--208179 Score: 174
Period size: 54 Copynumber: 1.9 Consensus size: 54
208065 TTACTGGTTT
* *
208075 GTAAAACATTTGACAATACATTCATCATTTCCTGTGATTTCTGCATAGATGTCC
1 GTAAAACATTTGACAACACATTCATCATTTCCTGTGATTTCTGCACAGATGTCC
* *
208129 GTAAAATATTTGACAACACATTCATCCTTTCCTGTGATTTCTGCACAGATG
1 GTAAAACATTTGACAACACATTCATCATTTCCTGTGATTTCTGCACAGATG
208180 CCTCATTAGT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 47 1.00
ACGTcount: A:0.30, C:0.21, G:0.13, T:0.36
Consensus pattern (54 bp):
GTAAAACATTTGACAACACATTCATCATTTCCTGTGATTTCTGCACAGATGTCC
Found at i:208679 original size:20 final size:19
Alignment explanation
Indices: 208636--208683 Score: 55
Period size: 17 Copynumber: 2.5 Consensus size: 19
208626 ATGTTTATAT
208636 AAAATAATAAATTGAATTCG
1 AAAA-AATAAATTGAATTCG
*
208656 --AAAATAAATTGAATTTTG
1 AAAAAATAAATTGAA-TTCG
208674 AAAAAATAAA
1 AAAAAATAAA
208684 CTTGTAATCT
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
17 11 0.46
18 5 0.21
20 8 0.33
ACGTcount: A:0.60, C:0.02, G:0.08, T:0.29
Consensus pattern (19 bp):
AAAAAATAAATTGAATTCG
Found at i:219304 original size:46 final size:46
Alignment explanation
Indices: 219250--219469 Score: 354
Period size: 46 Copynumber: 4.8 Consensus size: 46
219240 AATAAATGCT
219250 TGCGAACTAGATATCATGCGGTTAGGTTTATTTTTTCGAACAAGCA
1 TGCGAACTAGATATCATGCGGTTAGGTTTATTTTTTCGAACAAGCA
219296 TGCGAACTAGATATCATGCGGTTAGGTTTATTTTTTCGAACAAGCA
1 TGCGAACTAGATATCATGCGGTTAGGTTTATTTTTTCGAACAAGCA
*
219342 TGCGAACTATATATCATGCGGTTAGGTTTA-TTTTTCGAACAAGCA
1 TGCGAACTAGATATCATGCGGTTAGGTTTATTTTTTCGAACAAGCA
* * *
219387 TGCGAACTAGATATCATGCGGTTAGGTTTA-TTTTTAGAATAAATGCT
1 TGCGAACTAGATATCATGCGGTTAGGTTTATTTTTTCGAA-CAA-GCA
*
219434 TGCGAACTAGATATCATGCGGTTAGGATTTCTTTTT
1 TGCGAACTAGATATCATGCGGTTAGG-TTTATTTTT
219470 GTGAATAACA
Statistics
Matches: 164, Mismatches: 6, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
45 52 0.32
46 77 0.47
47 28 0.17
48 3 0.02
49 4 0.02
ACGTcount: A:0.28, C:0.14, G:0.21, T:0.37
Consensus pattern (46 bp):
TGCGAACTAGATATCATGCGGTTAGGTTTATTTTTTCGAACAAGCA
Found at i:219438 original size:92 final size:93
Alignment explanation
Indices: 219233--219469 Score: 390
Period size: 92 Copynumber: 2.6 Consensus size: 93
219223 TTTATTTTTG
219233 TTTTTCGAATAAATGCTTGCGAACTAGATATCATGCGGTTAGGTTTATTTTTTCGAACAAGCATG
1 TTTTTCGAATAAATGCTTGCGAACTAGATATCATGCGGTTAGGTTTA-TTTTTCGAACAAGCATG
219298 CGAACTAGATATCATGCGGTTAGGTTTAT
65 CGAACTAGATATCATGCGGTTAGGTTTAT
* * *
219327 TTTTTCGAA-CAA-GCATGCGAACTATATATCATGCGGTTAGGTTTATTTTTCGAACAAGCATGC
1 TTTTTCGAATAAATGCTTGCGAACTAGATATCATGCGGTTAGGTTTATTTTTCGAACAAGCATGC
219390 GAACTAGATATCATGCGGTTAGGTTTA-
66 GAACTAGATATCATGCGGTTAGGTTTAT
* *
219417 TTTTTAGAATAAATGCTTGCGAACTAGATATCATGCGGTTAGGATTTCTTTTT
1 TTTTTCGAATAAATGCTTGCGAACTAGATATCATGCGGTTAGG-TTTATTTTT
219470 GTGAATAACA
Statistics
Matches: 132, Mismatches: 8, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
90 8 0.06
91 47 0.36
92 58 0.44
93 10 0.08
94 9 0.07
ACGTcount: A:0.28, C:0.14, G:0.21, T:0.38
Consensus pattern (93 bp):
TTTTTCGAATAAATGCTTGCGAACTAGATATCATGCGGTTAGGTTTATTTTTCGAACAAGCATGC
GAACTAGATATCATGCGGTTAGGTTTAT
Found at i:221144 original size:25 final size:23
Alignment explanation
Indices: 221113--221159 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
221103 AAGGGATTGG
221113 AGATTGACATTCAAAAGAGTAGAGC
1 AGATTGA-ATTCAAAA-AGTAGAGC
*
221138 AGATTGAATTGAAAAAGTAGAG
1 AGATTGAATTCAAAAAGTAGAG
221160 AAGCAACTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 7 0.33
24 7 0.33
25 7 0.33
ACGTcount: A:0.47, C:0.06, G:0.26, T:0.21
Consensus pattern (23 bp):
AGATTGAATTCAAAAAGTAGAGC
Found at i:229283 original size:20 final size:20
Alignment explanation
Indices: 229232--229284 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
229222 AAATAATAAT
*
229232 AAATAAAAAAAAGAAAGAGAA
1 AAAT-AAAAAAAGAAAAAGAA
*
229253 AAATGAAAAAAGAAAAAG-A
1 AAATAAAAAAAGAAAAAGAA
229272 AAATAAATAAAAG
1 AAATAAA-AAAAG
229285 GGGGGTTCAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 7 0.25
20 17 0.61
21 4 0.14
ACGTcount: A:0.79, C:0.00, G:0.13, T:0.08
Consensus pattern (20 bp):
AAATAAAAAAAGAAAAAGAA
Found at i:230663 original size:55 final size:55
Alignment explanation
Indices: 230604--230718 Score: 160
Period size: 55 Copynumber: 2.1 Consensus size: 55
230594 TTTATGAAGA
* * *
230604 TCGAG-TCTTATAATCTCTTGTAGAATAGGGAGCATACTCGTTTGGTGAAGATTGT
1 TCGAGTTC-TATAATCTCTGGTAGAATAGGGAGCAGACTCGTTTGGTGAAGACTGT
* * *
230659 TCGAGTTCTATACTCTCTGGTAGAATAGGGAGCGGACTCGTTTGTTGAAGACTGT
1 TCGAGTTCTATAATCTCTGGTAGAATAGGGAGCAGACTCGTTTGGTGAAGACTGT
230714 TCGAG
1 TCGAG
230719 ACTGTTCGAG
Statistics
Matches: 53, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
55 51 0.96
56 2 0.04
ACGTcount: A:0.23, C:0.15, G:0.28, T:0.34
Consensus pattern (55 bp):
TCGAGTTCTATAATCTCTGGTAGAATAGGGAGCAGACTCGTTTGGTGAAGACTGT
Found at i:230760 original size:65 final size:64
Alignment explanation
Indices: 230656--230782 Score: 202
Period size: 65 Copynumber: 2.0 Consensus size: 64
230646 TGGTGAAGAT
* *
230656 TGTTCGAGTTCTATACTCTCTGGTAGAATAGGGAGCGGACTCGTTTGT-TGAAGACTGTTCGAGA
1 TGTTCGAGTTCTATACTCTCTGGTAGAATAGAGAGCGGAC-CCTTT-TATGAAGACTGTTCGAGA
230720 C
64 C
*
230721 TGTTCGAGTTCTATACTCTCTGGTAGAATAGAGAGCGGACCCTTTTATGAAGATTGTTCGAG
1 TGTTCGAGTTCTATACTCTCTGGTAGAATAGAGAGCGGACCCTTTTATGAAGACTGTTCGAG
230783 TTCTATACTC
Statistics
Matches: 58, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
63 1 0.02
64 18 0.31
65 39 0.67
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.33
Consensus pattern (64 bp):
TGTTCGAGTTCTATACTCTCTGGTAGAATAGAGAGCGGACCCTTTTATGAAGACTGTTCGAGAC
Found at i:230804 original size:54 final size:54
Alignment explanation
Indices: 230721--230981 Score: 217
Period size: 55 Copynumber: 4.8 Consensus size: 54
230711 TGTTCGAGAC
* * * *
230721 TGTTCGAGT-TCTATACTCTCTG-GTAGAATAGAGAGCGGACCCTTTTATGAAGAT
1 TGTTCGAGTCT-TATACTCCCTGAAT-GAATAGGGAGCAGACCCTTTTATGAAGAT
* * * *
230775 TGTTCGAGT-TCTATACTCCCTGAACGAATAGGGAGTAGACCCGTTTATTGACGAT
1 TGTTCGAGTCT-TATACTCCCTGAATGAATAGGGAGCAGACCCTTTTA-TGAAGAT
* * *
230830 TGATT-GAGTCTTATACTCCCTAAATGAATAGGGAGTAGACACGCTTGT-TGAAGAT
1 TG-TTCGAGTCTTATACTCCCTGAATGAATAGGGAGCAGAC-C-CTTTTATGAAGAT
* * * **
230885 TGATCGAGTCTTATACTCTCTGAATGAATAGGGAGCAGACACATTTGCTGAAGAT
1 TGTTCGAGTCTTATACTCCCTGAATGAATAGGGAGCAGAC-CCTTTTATGAAGAT
* * * * * *
230940 TGGTCAAGCCTTATACTCCCTAAAGGGATAGGGAGCAGACCC
1 TGTTCGAGTCTTATACTCCCTGAATGAATAGGGAGCAGACCC
230982 GTCATTCGAA
Statistics
Matches: 171, Mismatches: 28, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
54 43 0.25
55 121 0.71
56 4 0.02
57 3 0.02
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.29
Consensus pattern (54 bp):
TGTTCGAGTCTTATACTCCCTGAATGAATAGGGAGCAGACCCTTTTATGAAGAT
Found at i:230859 original size:55 final size:55
Alignment explanation
Indices: 230768--230979 Score: 237
Period size: 55 Copynumber: 3.9 Consensus size: 55
230758 GACCCTTTTA
* * * * * *
230768 TGAAGATTGTTCGAGT-TCTATACTCCCTGAACGAATAGGGAGTAGACCCGTTTAT
1 TGAAGATTGATCGAGTCT-TATACTCCCTAAATGAATAGGGAGCAGACACGTTTGT
* * * *
230823 TGACGATTGATTGAGTCTTATACTCCCTAAATGAATAGGGAGTAGACACGCTTGT
1 TGAAGATTGATCGAGTCTTATACTCCCTAAATGAATAGGGAGCAGACACGTTTGT
* * * *
230878 TGAAGATTGATCGAGTCTTATACTCTCTGAATGAATAGGGAGCAGACACATTTGC
1 TGAAGATTGATCGAGTCTTATACTCCCTAAATGAATAGGGAGCAGACACGTTTGT
* * * * *
230933 TGAAGATTGGTCAAGCCTTATACTCCCTAAAGGGATAGGGAGCAGAC
1 TGAAGATTGATCGAGTCTTATACTCCCTAAATGAATAGGGAGCAGAC
230980 CCGTCATTCG
Statistics
Matches: 133, Mismatches: 23, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
55 132 0.99
56 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (55 bp):
TGAAGATTGATCGAGTCTTATACTCCCTAAATGAATAGGGAGCAGACACGTTTGT
Found at i:230961 original size:110 final size:110
Alignment explanation
Indices: 230768--230979 Score: 264
Period size: 110 Copynumber: 1.9 Consensus size: 110
230758 GACCCTTTTA
* * * * * *
230768 TGAAGATTGTTCGAGTTCTATACTCCCTGAACGAATAGGGAGTAGACCCGTTTATTGACGATTGA
1 TGAAGATTGATCGAGTTCTATACTCCCTGAACGAATAGGGAGCAGACACATTTACTGAAGATTGA
** * * *
230833 TTGAGTCTTATACTCCCTAAATGAATAGGGAGTAGACACGCTTGT
66 TCAAGCCTTATACTCCCTAAAGGAATAGGGAGCAGACACGCTTGT
* * *
230878 TGAAGATTGATCGAG-TCTTATACTCTCTGAATGAATAGGGAGCAGACACATTTGCTGAAGATTG
1 TGAAGATTGATCGAGTTC-TATACTCCCTGAACGAATAGGGAGCAGACACATTTACTGAAGATTG
* *
230942 GTCAAGCCTTATACTCCCTAAAGGGATAGGGAGCAGAC
65 ATCAAGCCTTATACTCCCTAAAGGAATAGGGAGCAGAC
230980 CCGTCATTCG
Statistics
Matches: 85, Mismatches: 16, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
109 2 0.02
110 83 0.98
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (110 bp):
TGAAGATTGATCGAGTTCTATACTCCCTGAACGAATAGGGAGCAGACACATTTACTGAAGATTGA
TCAAGCCTTATACTCCCTAAAGGAATAGGGAGCAGACACGCTTGT
Found at i:235333 original size:19 final size:20
Alignment explanation
Indices: 235286--235346 Score: 61
Period size: 19 Copynumber: 2.9 Consensus size: 20
235276 ATTCCCCTGT
235286 GGGGGAAATCGGTTCCCCTTCAAA
1 GGGGG-AATCGGTT-CCC-TC-AA
235310 GGGGGAATCGGTTCCCTC-A
1 GGGGGAATCGGTTCCCTCAA
* *
235329 GGGGGGATCGATTCCCTC
1 GGGGGAATCGGTTCCCTC
235347 TGCACCAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
19 17 0.49
21 2 0.06
22 3 0.09
23 8 0.23
24 5 0.14
ACGTcount: A:0.18, C:0.26, G:0.34, T:0.21
Consensus pattern (20 bp):
GGGGGAATCGGTTCCCTCAA
Found at i:241152 original size:22 final size:21
Alignment explanation
Indices: 241107--241166 Score: 93
Period size: 21 Copynumber: 2.8 Consensus size: 21
241097 CCGTTGAACA
*
241107 GGGGGGAATCGGTACCCCCTT
1 GGGGGGAATCGGTTCCCCCTT
*
241128 GGGGGGAATCGGTTCCTCCTAT
1 GGGGGGAATCGGTTCCCCCT-T
241150 GGGGGGAATCGGTTCCC
1 GGGGGGAATCGGTTCCC
241167 TCTGAGCAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
21 18 0.51
22 17 0.49
ACGTcount: A:0.13, C:0.25, G:0.40, T:0.22
Consensus pattern (21 bp):
GGGGGGAATCGGTTCCCCCTT
Found at i:247044 original size:8 final size:8
Alignment explanation
Indices: 247031--247058 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
247021 CTATTATTGG
247031 AAATTTAA
1 AAATTTAA
247039 AAATTTAA
1 AAATTTAA
247047 AAATTTAA
1 AAATTTAA
247055 AAAT
1 AAAT
247059 ATATTTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (8 bp):
AAATTTAA
Found at i:249251 original size:3 final size:3
Alignment explanation
Indices: 249245--249321 Score: 81
Period size: 3 Copynumber: 26.0 Consensus size: 3
249235 TTTTTATTAT
249245 TAA TAA TAA TAA -ATA TAA TAA TAA TAA -AA GT-A TAAA TAA T-A TAA
1 TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA -TAA T-AA TAA TAA TAA
**
249289 TAA TAA TAA TTT TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
249322 CAAATGGATA
Statistics
Matches: 63, Mismatches: 4, Indels: 14
0.78 0.05 0.17
Matches are distributed among these distances:
2 6 0.10
3 54 0.86
4 3 0.05
ACGTcount: A:0.64, C:0.00, G:0.01, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:250287 original size:17 final size:17
Alignment explanation
Indices: 250265--250308 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 17
250255 ACTTAGGCAT
250265 CAAGTTCACACTTGAGC
1 CAAGTTCACACTTGAGC
*
250282 CAAGTTCAGACTTGAGC
1 CAAGTTCACACTTGAGC
*
250299 CAAGGTCACA
1 CAAGTTCACA
250309 TAGTGCCTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.32, C:0.27, G:0.20, T:0.20
Consensus pattern (17 bp):
CAAGTTCACACTTGAGC
Found at i:254092 original size:20 final size:20
Alignment explanation
Indices: 254063--254101 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
254053 ATTTCACCAC
*
254063 ATGCAACTATATGCTCCTAA
1 ATGCAACTATATGATCCTAA
*
254083 ATGCATCTATATGATCCTA
1 ATGCAACTATATGATCCTA
254102 TATGAGCTCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.23, G:0.10, T:0.33
Consensus pattern (20 bp):
ATGCAACTATATGATCCTAA
Found at i:255238 original size:44 final size:45
Alignment explanation
Indices: 255157--255292 Score: 229
Period size: 45 Copynumber: 3.0 Consensus size: 45
255147 ATAAAATTCC
* *
255157 TTACCAATATATTTACCATTTATTCCATAAGCTCGTAAGTTTATT
1 TTACCAATATACTTACCATTTATTCCATAAGCTCGTAAGCTTATT
*
255202 TTACCAATATACTTACCA-TTATTCCATAAGCTCGTAAGCCTATT
1 TTACCAATATACTTACCATTTATTCCATAAGCTCGTAAGCTTATT
*
255246 TTACCAATATACTTACCATTTATCCCATAAGCTCGTAAGCTTATT
1 TTACCAATATACTTACCATTTATTCCATAAGCTCGTAAGCTTATT
255291 TT
1 TT
255293 CCATTACTCC
Statistics
Matches: 85, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
44 42 0.49
45 43 0.51
ACGTcount: A:0.31, C:0.22, G:0.07, T:0.40
Consensus pattern (45 bp):
TTACCAATATACTTACCATTTATTCCATAAGCTCGTAAGCTTATT
Found at i:255305 original size:31 final size:32
Alignment explanation
Indices: 255270--255402 Score: 133
Period size: 31 Copynumber: 3.8 Consensus size: 32
255260 ACCATTTATC
255270 CCATAAGCTCGTAAGCTTATTTT-CCATTACT
1 CCATAAGCTCGTAAGCTTATTTTACCATTACT
255301 CCATAAGCTCGTAAGCTTATTTTACCAATATACTT
1 CCATAAGCTCGTAAGCTTATTTTACC-AT-TAC-T
** *
255336 ACCATTTATCCCATAAGCGTAAGGTTATTTTACCATTACT
1 -CCA--TA-AGC-T---CGTAAGCTTATTTTACCATTACT
255376 CCATAAGCTCGTAAGCTTATTTTACCA
1 CCATAAGCTCGTAAGCTTATTTTACCA
255403 ATATACTTGT
Statistics
Matches: 84, Mismatches: 6, Indels: 23
0.74 0.05 0.20
Matches are distributed among these distances:
31 23 0.27
32 19 0.23
33 2 0.02
34 3 0.04
35 2 0.02
36 4 0.05
37 2 0.02
38 2 0.02
39 4 0.05
40 2 0.02
41 3 0.04
42 2 0.02
43 16 0.19
ACGTcount: A:0.29, C:0.24, G:0.10, T:0.37
Consensus pattern (32 bp):
CCATAAGCTCGTAAGCTTATTTTACCATTACT
Found at i:255308 original size:76 final size:77
Alignment explanation
Indices: 255214--255442 Score: 383
Period size: 76 Copynumber: 3.0 Consensus size: 77
255204 ACCAATATAC
* *
255214 TTACCATTATTCCATAAGCTCGTAAGCCTATTTTACCAATATACTTACCATTTATCCCATAAGCT
1 TTACCATTACTCCATAAGCTCGTAAGCTTATTTTACCAATATACTTACCATTTATCCCATAAGCT
255279 CGTAAGCTTATT
66 CGTAAGCTTATT
255291 TT-CCATTACTCCATAAGCTCGTAAGCTTATTTTACCAATATACTTACCATTTATCCCATAAG--
1 TTACCATTACTCCATAAGCTCGTAAGCTTATTTTACCAATATACTTACCATTTATCCCATAAGCT
*
255353 CGTAAGGTTATT
66 CGTAAGCTTATT
** *
255365 TTACCATTACTCCATAAGCTCGTAAGCTTATTTTACCAATATACTTGTCATTTATCCCATAAACT
1 TTACCATTACTCCATAAGCTCGTAAGCTTATTTTACCAATATACTTACCATTTATCCCATAAGCT
255430 CGTAAGCTTATT
66 CGTAAGCTTATT
255442 T
1 T
255443 GCATGCTTAC
Statistics
Matches: 142, Mismatches: 7, Indels: 6
0.92 0.05 0.04
Matches are distributed among these distances:
74 13 0.09
75 57 0.40
76 58 0.41
77 14 0.10
ACGTcount: A:0.30, C:0.24, G:0.08, T:0.38
Consensus pattern (77 bp):
TTACCATTACTCCATAAGCTCGTAAGCTTATTTTACCAATATACTTACCATTTATCCCATAAGCT
CGTAAGCTTATT
Found at i:261884 original size:89 final size:90
Alignment explanation
Indices: 261766--261945 Score: 290
Period size: 89 Copynumber: 2.0 Consensus size: 90
261756 ATAAAATTCC
* **
261766 TTACCAATATACTTACCGTTTATTTCATAAGCTCGTAAGCTTATTTTACCAATATACTTACCA-T
1 TTACCAATATACTTACCATTTATCCCATAAGCTCGTAAGCTTATTTTACCAATATACTTACCATT
*
261830 TATTCCATAAGCTCGTAAGCTTATT
66 TATCCCATAAGCTCGTAAGCTTATT
* **
261855 TTACCAATATACTTATCATTTATCCCATAAGCTCGTAAGCTTATTTTACCAATATACTTGTCATT
1 TTACCAATATACTTACCATTTATCCCATAAGCTCGTAAGCTTATTTTACCAATATACTTACCATT
261920 TATCCCATAAGCTCGTAAGCTTATT
66 TATCCCATAAGCTCGTAAGCTTATT
261945 T
1 T
261946 GCATGCTTAC
Statistics
Matches: 83, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
89 57 0.69
90 26 0.31
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.41
Consensus pattern (90 bp):
TTACCAATATACTTACCATTTATCCCATAAGCTCGTAAGCTTATTTTACCAATATACTTACCATT
TATCCCATAAGCTCGTAAGCTTATT
Found at i:261898 original size:45 final size:45
Alignment explanation
Indices: 261766--261945 Score: 290
Period size: 45 Copynumber: 4.0 Consensus size: 45
261756 ATAAAATTCC
* **
261766 TTACCAATATACTTACCGTTTATTTCATAAGCTCGTAAGCTTATT
1 TTACCAATATACTTACCATTTATCCCATAAGCTCGTAAGCTTATT
*
261811 TTACCAATATACTTACCA-TTATTCCATAAGCTCGTAAGCTTATT
1 TTACCAATATACTTACCATTTATCCCATAAGCTCGTAAGCTTATT
*
261855 TTACCAATATACTTATCATTTATCCCATAAGCTCGTAAGCTTATT
1 TTACCAATATACTTACCATTTATCCCATAAGCTCGTAAGCTTATT
**
261900 TTACCAATATACTTGTCATTTATCCCATAAGCTCGTAAGCTTATT
1 TTACCAATATACTTACCATTTATCCCATAAGCTCGTAAGCTTATT
261945 T
1 T
261946 GCATGCTTAC
Statistics
Matches: 129, Mismatches: 5, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
44 42 0.33
45 87 0.67
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.41
Consensus pattern (45 bp):
TTACCAATATACTTACCATTTATCCCATAAGCTCGTAAGCTTATT
Found at i:261945 original size:25 final size:25
Alignment explanation
Indices: 261872--261945 Score: 63
Period size: 25 Copynumber: 3.2 Consensus size: 25
261862 TATACTTATC
261872 ATTTATCCCATAAGCTCGTAAGCTT
1 ATTTATCCCATAAGCTCGTAAGCTT
* *
261897 ATTT-TACCAATATA-CT--T--G-TC
1 ATTTAT-CCCATA-AGCTCGTAAGCTT
261917 ATTTATCCCATAAGCTCGTAAGCTT
1 ATTTATCCCATAAGCTCGTAAGCTT
261942 ATTT
1 ATTT
261946 GCATGCTTAC
Statistics
Matches: 36, Mismatches: 4, Indels: 18
0.62 0.07 0.31
Matches are distributed among these distances:
19 1 0.03
20 12 0.33
21 2 0.06
22 1 0.03
23 1 0.03
24 2 0.06
25 16 0.44
26 1 0.03
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (25 bp):
ATTTATCCCATAAGCTCGTAAGCTT
Found at i:265224 original size:15 final size:15
Alignment explanation
Indices: 265198--265230 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
265188 ACACACCTTA
265198 AAATTATTATTTTTAT
1 AAATTATTATTTTT-T
265214 AAATT-TTATTTTTT
1 AAATTATTATTTTTT
265228 AAA
1 AAA
265231 ATAATATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 4 0.24
15 8 0.47
16 5 0.29
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (15 bp):
AAATTATTATTTTTT
Found at i:265232 original size:15 final size:15
Alignment explanation
Indices: 265195--265232 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
265185 TTCACACACC
265195 TTAAAATTATTATTT
1 TTAAAATTATTATTT
265210 TTATAAATT-TTATTTT
1 TTA-AAATTATTA-TTT
265226 TTAAAAT
1 TTAAAAT
265233 AATATAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
15 10 0.48
16 11 0.52
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (15 bp):
TTAAAATTATTATTT
Found at i:267867 original size:19 final size:19
Alignment explanation
Indices: 267845--267884 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
267835 AGACGATAGG
267845 TGATATTTATGATACCTTC
1 TGATATTTATGATACCTTC
*
267864 TGATATTTATGATATCTTC
1 TGATATTTATGATACCTTC
267883 TG
1 TG
267885 TCATATCACA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.25, C:0.12, G:0.12, T:0.50
Consensus pattern (19 bp):
TGATATTTATGATACCTTC
Found at i:271204 original size:47 final size:50
Alignment explanation
Indices: 271148--271244 Score: 164
Period size: 47 Copynumber: 2.0 Consensus size: 50
271138 TTTCAAGAAC
*
271148 AGATATTCAATACAAAGTTTTGGATC-AGAA-AGAGA-TTTCCTACATTT
1 AGATATTCAATACAAAGTTTTGGATCAAAAAGAGAGATTTTCCTACATTT
271195 AGATATTCAATACAAAGTTTTGGATCAAAAAGAGAGATTTTCCTACATTT
1 AGATATTCAATACAAAGTTTTGGATCAAAAAGAGAGATTTTCCTACATTT
271245 TTGCCGTGCG
Statistics
Matches: 46, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
47 26 0.57
48 3 0.07
49 5 0.11
50 12 0.26
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.34
Consensus pattern (50 bp):
AGATATTCAATACAAAGTTTTGGATCAAAAAGAGAGATTTTCCTACATTT
Found at i:275726 original size:85 final size:85
Alignment explanation
Indices: 275578--275750 Score: 319
Period size: 85 Copynumber: 2.0 Consensus size: 85
275568 AATTCAATTT
* *
275578 AGGTGGTAATATTCCATTTCAGTTAGAAAATACAGTCAAATGTTTGGGGTAGTATAAGTGATCAA
1 AGGTAGTAATATTCCATTTCAATTAGAAAATACAGTCAAATGTTTGGGGTAGTATAAGTGATCAA
275643 GGGGTGGTAACTCATATCAC
66 GGGGTGGTAACTCATATCAC
*
275663 AGGTAGTAATATTCCATTTCAATTAGAAAATACAGTCAGATGTTTGGGGTAGTATAAGTGATCAA
1 AGGTAGTAATATTCCATTTCAATTAGAAAATACAGTCAAATGTTTGGGGTAGTATAAGTGATCAA
275728 GGGGTGGTAACTCATATCAC
66 GGGGTGGTAACTCATATCAC
275748 AGG
1 AGG
275751 AGGAAATTTT
Statistics
Matches: 85, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
85 85 1.00
ACGTcount: A:0.34, C:0.12, G:0.25, T:0.30
Consensus pattern (85 bp):
AGGTAGTAATATTCCATTTCAATTAGAAAATACAGTCAAATGTTTGGGGTAGTATAAGTGATCAA
GGGGTGGTAACTCATATCAC
Found at i:286643 original size:22 final size:21
Alignment explanation
Indices: 286594--286652 Score: 79
Period size: 18 Copynumber: 2.9 Consensus size: 21
286584 GGGGCACTGA
*
286594 ATATTTGTCCCGAATGACCAC
1 ATATATGTCCCGAATGACCAC
286615 ---TATGTCCCGAATGACCAC
1 ATATATGTCCCGAATGACCAC
286633 TATATATGTCCCGAATGACC
1 -ATATATGTCCCGAATGACC
286653 GCTCCTTAAG
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
18 17 0.52
22 16 0.48
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (21 bp):
ATATATGTCCCGAATGACCAC
Found at i:287233 original size:23 final size:23
Alignment explanation
Indices: 287203--287248 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
287193 TTACTTGTCA
287203 CTTATTCTGGAACTCGTTTAGGC
1 CTTATTCTGGAACTCGTTTAGGC
287226 CTTATTCTGGAACTCGTTTAGGC
1 CTTATTCTGGAACTCGTTTAGGC
287249 TTGATATCTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.17, C:0.22, G:0.22, T:0.39
Consensus pattern (23 bp):
CTTATTCTGGAACTCGTTTAGGC
Found at i:292085 original size:183 final size:187
Alignment explanation
Indices: 291772--292150 Score: 703
Period size: 183 Copynumber: 2.0 Consensus size: 187
291762 TGACATTTGT
291772 TCACCATATTCTATCTTATTCACGTAATAACAAAACTTCTCTATATCACTTTTCCGATTCAACAC
1 TCACCATATTCTATCTTATTCACGTAATAACAAAACTTCTCTATATCACTTTTCCGATTCAACAC
*
291837 TATGAACATTTAGTATCACTATTCTAATATGATTTCAACTTTCTGAAATCAATATTTGATCTTAC
66 TATGAACATTTAGTATCACTA-T-TAATATGATTTCAACTTTCTGAAATCAACATTTGATCTTAC
291902 GAGGCATTTCCTGAGATGTCTGTCCCTCATCCTGCCTGGCCA-GGCAAGTGAGTTGCTA
129 GAGGCATTTCCTGAGATGTCTGTCCCTCATCCTGCCTGGCCAGGGCAAGTGAGTTGCTA
291960 TCACCATATTCTATCTTATTCACGTAATAAC-AAACTTCTCTATATCACTTTT-CGATTCAACAC
1 TCACCATATTCTATCTTATTCACGTAATAACAAAACTTCTCTATATCACTTTTCCGATTCAACAC
292023 TATGAACATTTAGTATCACTA-TAATATGATTTCAACTTTCTGAAATCAACATTTGATCTTACGA
66 TATGAACATTTAGTATCACTATTAATATGATTTCAACTTTCTGAAATCAACATTTGATCTTACGA
292087 GGCATTTCCTGAGATGTCTGTCCCTCATCCTGCCTGGCCAGGGCAAGTGAGTTGCTA
131 GGCATTTCCTGAGATGTCTGTCCCTCATCCTGCCTGGCCAGGGCAAGTGAGTTGCTA
292144 TCACCAT
1 TCACCAT
292151 CAGGTTTATC
Statistics
Matches: 189, Mismatches: 1, Indels: 6
0.96 0.01 0.03
Matches are distributed among these distances:
183 82 0.43
184 23 0.12
186 32 0.17
187 21 0.11
188 31 0.16
ACGTcount: A:0.28, C:0.24, G:0.12, T:0.36
Consensus pattern (187 bp):
TCACCATATTCTATCTTATTCACGTAATAACAAAACTTCTCTATATCACTTTTCCGATTCAACAC
TATGAACATTTAGTATCACTATTAATATGATTTCAACTTTCTGAAATCAACATTTGATCTTACGA
GGCATTTCCTGAGATGTCTGTCCCTCATCCTGCCTGGCCAGGGCAAGTGAGTTGCTA
Found at i:292640 original size:22 final size:22
Alignment explanation
Indices: 292615--292656 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
292605 GATTGTTAAT
*
292615 AGGGAACTGATTCCCCTGCTAC
1 AGGGAACCGATTCCCCTGCTAC
292637 AGGGAACCGATTCCCCTGCT
1 AGGGAACCGATTCCCCTGCT
292657 TCAGTACTGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.21, C:0.33, G:0.24, T:0.21
Consensus pattern (22 bp):
AGGGAACCGATTCCCCTGCTAC
Found at i:293265 original size:18 final size:18
Alignment explanation
Indices: 293242--293315 Score: 87
Period size: 18 Copynumber: 3.9 Consensus size: 18
293232 ACTGAATATT
293242 TGTCCCGAATGACCACTA
1 TGTCCCGAATGACCACTA
*
293260 TGTCCCGAAAGACCACTGTATA
1 TGTCCCGAATGACCAC----TA
293282 TGTCCCGAATGACCACTA
1 TGTCCCGAATGACCACTA
*
293300 TGT-CCGAAGGACCACT
1 TGTCCCGAATGACCACT
293316 GTATATGTCC
Statistics
Matches: 49, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
17 12 0.24
18 20 0.41
22 17 0.35
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.22
Consensus pattern (18 bp):
TGTCCCGAATGACCACTA
Found at i:293286 original size:22 final size:22
Alignment explanation
Indices: 293258--293337 Score: 91
Period size: 22 Copynumber: 3.9 Consensus size: 22
293248 GAATGACCAC
293258 TATGTCCCGAAAGACCACTGTA
1 TATGTCCCGAAAGACCACTGTA
*
293280 TATGTCCCGAATGACCAC----
1 TATGTCCCGAAAGACCACTGTA
*
293298 TATGT-CCGAAGGACCACTGTA
1 TATGTCCCGAAAGACCACTGTA
293319 TATGTCCC-AAAGGACCACT
1 TATGTCCCGAAA-GACCACT
293338 TTTTAAGAAC
Statistics
Matches: 49, Mismatches: 3, Indels: 12
0.77 0.05 0.19
Matches are distributed among these distances:
17 11 0.22
18 5 0.10
21 7 0.14
22 26 0.53
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.23
Consensus pattern (22 bp):
TATGTCCCGAAAGACCACTGTA
Found at i:293318 original size:39 final size:40
Alignment explanation
Indices: 293242--293337 Score: 158
Period size: 39 Copynumber: 2.4 Consensus size: 40
293232 ACTGAATATT
293242 TGTCCCGAATGACCACTATGTCCCGAAAGACCACTGTATA
1 TGTCCCGAATGACCACTATGTCCCGAAAGACCACTGTATA
*
293282 TGTCCCGAATGACCACTATGT-CCGAAGGACCACTGTATA
1 TGTCCCGAATGACCACTATGTCCCGAAAGACCACTGTATA
* *
293321 TGTCCCAAAGGACCACT
1 TGTCCCGAATGACCACT
293338 TTTTAAGAAC
Statistics
Matches: 53, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
39 32 0.60
40 21 0.40
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.22
Consensus pattern (40 bp):
TGTCCCGAATGACCACTATGTCCCGAAAGACCACTGTATA
Found at i:294333 original size:21 final size:22
Alignment explanation
Indices: 294307--294350 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
294297 CAGATTACAA
294307 ATAGGGTACCGA-TACCCTGCT
1 ATAGGGTACCGATTACCCTGCT
* *
294328 ATAGGGTATCGATTCCCCTGCT
1 ATAGGGTACCGATTACCCTGCT
294350 A
1 A
294351 CAGTACTTAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (22 bp):
ATAGGGTACCGATTACCCTGCT
Found at i:294891 original size:21 final size:21
Alignment explanation
Indices: 294866--294906 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
294856 CATATGAAAT
*
294866 TTGTCCCGAATGACCTATGAG
1 TTGTCCCGAAGGACCTATGAG
*
294887 TTGTCCCGGAGGACCTATGA
1 TTGTCCCGAAGGACCTATGA
294907 AACCCTCGAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.22, C:0.24, G:0.27, T:0.27
Consensus pattern (21 bp):
TTGTCCCGAAGGACCTATGAG
Found at i:297717 original size:30 final size:30
Alignment explanation
Indices: 297683--297739 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
297673 GATGTTTTTT
* *
297683 AGTATCGGTATTGTTCATTACTGTTCACAC
1 AGTATCGGTACTGTTCATTAATGTTCACAC
297713 AGTATCGGTACTGTTCATTAATGTTCA
1 AGTATCGGTACTGTTCATTAATGTTCA
297740 TCAAAATATT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.25, C:0.18, G:0.18, T:0.40
Consensus pattern (30 bp):
AGTATCGGTACTGTTCATTAATGTTCACAC
Found at i:304889 original size:24 final size:21
Alignment explanation
Indices: 304804--304883 Score: 133
Period size: 21 Copynumber: 3.8 Consensus size: 21
304794 GTTTCCATAC
*
304804 AATCCACCGCCATATGAACCT
1 AATCCACCACCATATGAACCT
* *
304825 AAACCACCTCCATATGAACCT
1 AATCCACCACCATATGAACCT
304846 AATCCACCACCATATGAACCT
1 AATCCACCACCATATGAACCT
304867 AATCCACCACCATATGA
1 AATCCACCACCATATGA
304884 TGAACCAAAC
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 55 1.00
ACGTcount: A:0.38, C:0.38, G:0.06, T:0.19
Consensus pattern (21 bp):
AATCCACCACCATATGAACCT
Found at i:307533 original size:38 final size:39
Alignment explanation
Indices: 307491--307565 Score: 134
Period size: 38 Copynumber: 1.9 Consensus size: 39
307481 TAAAGAGATG
307491 ATTTTTTAGCATTACATTC-TTTTTTATTGAATTTTAAT
1 ATTTTTTAGCATTACATTCTTTTTTTATTGAATTTTAAT
*
307529 ATTTTTTAGCTTTACATTCTTTTTTTATTGAATTTTA
1 ATTTTTTAGCATTACATTCTTTTTTTATTGAATTTTA
307566 TTCACTTTCA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
38 18 0.51
39 17 0.49
ACGTcount: A:0.24, C:0.08, G:0.05, T:0.63
Consensus pattern (39 bp):
ATTTTTTAGCATTACATTCTTTTTTTATTGAATTTTAAT
Found at i:314721 original size:32 final size:31
Alignment explanation
Indices: 314685--314865 Score: 226
Period size: 32 Copynumber: 5.7 Consensus size: 31
314675 GTTCTAAGGA
314685 ACATATGGACAGAATTACCTATGTCTTTCGAG
1 ACATATGGACAGAA-TACCTATGTCTTTCGAG
* *
314717 ACATATGGACAGTATACCTATGT-TCTACG-G
1 ACATATGGACAGAATACCTATGTCT-TTCGAG
314747 AACATATGGACAGAATTACCTATGTCTTTCGAG
1 -ACATATGGACAGAA-TACCTATGTCTTTCGAG
* *
314780 ACATATGGACAGTATACCTATGT-TCTACG-G
1 ACATATGGACAGAATACCTATGTCT-TTCGAG
314810 AACATATGGACAGAATTACCTATGTCTTTCGAG
1 -ACATATGGACAGAA-TACCTATGTCTTTCGAG
*
314843 ACATATGGACAGTATACCTATGT
1 ACATATGGACAGAATACCTATGT
314866 TCTAAGGAAC
Statistics
Matches: 130, Mismatches: 9, Indels: 21
0.81 0.06 0.13
Matches are distributed among these distances:
30 4 0.03
31 59 0.45
32 63 0.48
33 4 0.03
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (31 bp):
ACATATGGACAGAATACCTATGTCTTTCGAG
Found at i:314764 original size:63 final size:63
Alignment explanation
Indices: 314665--314893 Score: 424
Period size: 63 Copynumber: 3.7 Consensus size: 63
314655 AGAGTTGAGG
314665 GTATACCTATGTTCTAAGGAACATATGGACAGAATTACCTATGTCTTTCGAGACATATGGACA
1 GTATACCTATGTTCTAAGGAACATATGGACAGAATTACCTATGTCTTTCGAGACATATGGACA
*
314728 GTATACCTATGTTCTACGGAACATATGGACAGAATTACCTATGTCTTTCGAGACATATGGACA
1 GTATACCTATGTTCTAAGGAACATATGGACAGAATTACCTATGTCTTTCGAGACATATGGACA
*
314791 GTATACCTATGTTCTACGGAACATATGGACAGAATTACCTATGTCTTTCGAGACATATGGACA
1 GTATACCTATGTTCTAAGGAACATATGGACAGAATTACCTATGTCTTTCGAGACATATGGACA
*
314854 GTATACCTATGTTCTAAGGAACATATGGACAG-TTTACCTA
1 GTATACCTATGTTCTAAGGAACATATGGACAGAATTACCTA
314894 GGTTCTTCGG
Statistics
Matches: 163, Mismatches: 3, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
62 7 0.04
63 156 0.96
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31
Consensus pattern (63 bp):
GTATACCTATGTTCTAAGGAACATATGGACAGAATTACCTATGTCTTTCGAGACATATGGACA
Found at i:314899 original size:31 final size:31
Alignment explanation
Indices: 314668--314918 Score: 253
Period size: 31 Copynumber: 8.0 Consensus size: 31
314658 GTTGAGGGTA
* *
314668 TACCTATGTTCTAAGGAACATATGGACAGAAT
1 TACCTATGTTCTACGGAACATATGGACAG-TT
* *
314700 TACCTATG-TCTTTC-GAGACATATGGACAGTA
1 TACCTATGTTC-TACGGA-ACATATGGACAGTT
*
314731 TACCTATGTTCTACGGAACATATGGACAGAAT
1 TACCTATGTTCTACGGAACATATGGACAG-TT
* *
314763 TACCTATG-TCTTTC-GAGACATATGGACAGTA
1 TACCTATGTTC-TACGGA-ACATATGGACAGTT
*
314794 TACCTATGTTCTACGGAACATATGGACAGAAT
1 TACCTATGTTCTACGGAACATATGGACAG-TT
* *
314826 TACCTATG-TCTTTC-GAGACATATGGACAGTA
1 TACCTATGTTC-TACGGA-ACATATGGACAGTT
*
314857 TACCTATGTTCTAAGGAACATATGGACAGTT
1 TACCTATGTTCTACGGAACATATGGACAGTT
* * *
314888 TACCTAGGTTCTTCGGAACCTATGGACAGTT
1 TACCTATGTTCTACGGAACATATGGACAGTT
314919 GCCGAGGATC
Statistics
Matches: 182, Mismatches: 23, Indels: 29
0.78 0.10 0.12
Matches are distributed among these distances:
31 105 0.58
32 77 0.42
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.31
Consensus pattern (31 bp):
TACCTATGTTCTACGGAACATATGGACAGTT
Found at i:314967 original size:30 final size:30
Alignment explanation
Indices: 314905--314975 Score: 88
Period size: 30 Copynumber: 2.4 Consensus size: 30
314895 GTTCTTCGGA
* * * *
314905 ACCTATGGACAGTTGCCGAGGATCTTTATG
1 ACCTCTGGATAGTTACCGAGGATCCTTATG
* *
314935 ACCTCTGGATAGTTACCGAGGTTCCTTGTG
1 ACCTCTGGATAGTTACCGAGGATCCTTATG
314965 ACCTCTGGATA
1 ACCTCTGGATA
314976 AGTCCTTCGG
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.21, C:0.23, G:0.25, T:0.31
Consensus pattern (30 bp):
ACCTCTGGATAGTTACCGAGGATCCTTATG
Found at i:317607 original size:24 final size:25
Alignment explanation
Indices: 317571--317618 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 25
317561 GATGAATGTA
317571 TAAACGAAAAAGATAGTTGGAAAAC
1 TAAACGAAAAAGATAGTTGGAAAAC
*
317596 TAAA-GAATAAGATAGTTGGAAAA
1 TAAACGAAAAAGATAGTTGGAAAA
317619 GTAAGTTTCT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 18 0.82
25 4 0.18
ACGTcount: A:0.56, C:0.04, G:0.21, T:0.19
Consensus pattern (25 bp):
TAAACGAAAAAGATAGTTGGAAAAC
Found at i:319428 original size:23 final size:23
Alignment explanation
Indices: 319388--319432 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
319378 GAGGACAGAG
*
319388 CATAAATTATATGATATGAGATT
1 CATAAATTACATGATATGAGATT
319411 CATAAA-TACATGATTATGAGAT
1 CATAAATTACATGA-TATGAGAT
319433 ATATGTTTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.44, C:0.07, G:0.13, T:0.36
Consensus pattern (23 bp):
CATAAATTACATGATATGAGATT
Found at i:319704 original size:32 final size:32
Alignment explanation
Indices: 319668--319848 Score: 214
Period size: 32 Copynumber: 5.8 Consensus size: 32
319658 GTTCTAAGGA
*
319668 ACATATGGACAGAATTACATATGTCTTTCGAG
1 ACATATGGACAGAATTACCTATGTCTTTCGAG
* *
319700 ACATATGGACAGTA-TACCTATGT-TCTACG-G
1 ACATATGGACAGAATTACCTATGTCT-TTCGAG
*
319730 AACATATGGACAGAATTACCTATGTCTTTCGAT
1 -ACATATGGACAGAATTACCTATGTCTTTCGAG
* *
319763 ACATATGGACAGTA-TACCTATGT-TCTACG-G
1 ACATATGGACAGAATTACCTATGTCT-TTCGAG
319793 AACATATGGACAGAATTACCTATGTCTTTCGAG
1 -ACATATGGACAGAATTACCTATGTCTTTCGAG
*
319826 ACATATGGACAGTA-TACCTATGT
1 ACATATGGACAGAATTACCTATGT
319849 TCTAAGGAAC
Statistics
Matches: 127, Mismatches: 12, Indels: 21
0.79 0.08 0.13
Matches are distributed among these distances:
30 3 0.02
31 58 0.46
32 63 0.50
33 3 0.02
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (32 bp):
ACATATGGACAGAATTACCTATGTCTTTCGAG
Found at i:319735 original size:31 final size:31
Alignment explanation
Indices: 319648--319900 Score: 266
Period size: 31 Copynumber: 8.1 Consensus size: 31
319638 AGAGTTGAGG
*
319648 GTATACCTATGTTCTAAGGAACATATGGACA
1 GTATACCTATGTTCTACGGAACATATGGACA
* * *
319679 GAATTACATATG-TCTTTC-GAGACATATGGACA
1 GTA-TACCTATGTTC-TACGGA-ACATATGGACA
319711 GTATACCTATGTTCTACGGAACATATGGACA
1 GTATACCTATGTTCTACGGAACATATGGACA
* *
319742 GAATTACCTATG-TCTTTC-GATACATATGGACA
1 GTA-TACCTATGTTC-TACGGA-ACATATGGACA
319774 GTATACCTATGTTCTACGGAACATATGGACA
1 GTATACCTATGTTCTACGGAACATATGGACA
* *
319805 GAATTACCTATG-TCTTTC-GAGACATATGGACA
1 GTA-TACCTATGTTC-TACGGA-ACATATGGACA
*
319837 GTATACCTATGTTCTAAGGAACATATGGACA
1 GTATACCTATGTTCTACGGAACATATGGACA
* * * *
319868 GTTTACCTAGGTTCTTCGGAACCTATGGACA
1 GTATACCTATGTTCTACGGAACATATGGACA
319899 GT
1 GT
319901 TGCCGAGGAT
Statistics
Matches: 186, Mismatches: 21, Indels: 30
0.78 0.09 0.13
Matches are distributed among these distances:
31 107 0.58
32 79 0.42
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31
Consensus pattern (31 bp):
GTATACCTATGTTCTACGGAACATATGGACA
Found at i:319747 original size:63 final size:63
Alignment explanation
Indices: 319648--319876 Score: 406
Period size: 63 Copynumber: 3.7 Consensus size: 63
319638 AGAGTTGAGG
*
319648 GTATACCTATGTTCTAAGGAACATATGGACAGAATTACATATGTCTTTCGAGACATATGGACA
1 GTATACCTATGTTCTAAGGAACATATGGACAGAATTACCTATGTCTTTCGAGACATATGGACA
* *
319711 GTATACCTATGTTCTACGGAACATATGGACAGAATTACCTATGTCTTTCGATACATATGGACA
1 GTATACCTATGTTCTAAGGAACATATGGACAGAATTACCTATGTCTTTCGAGACATATGGACA
*
319774 GTATACCTATGTTCTACGGAACATATGGACAGAATTACCTATGTCTTTCGAGACATATGGACA
1 GTATACCTATGTTCTAAGGAACATATGGACAGAATTACCTATGTCTTTCGAGACATATGGACA
*
319837 GTATACCTATGTTCTAAGGAACATATGGACAG-TTTACCTA
1 GTATACCTATGTTCTAAGGAACATATGGACAGAATTACCTA
319877 GGTTCTTCGG
Statistics
Matches: 160, Mismatches: 6, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
62 7 0.04
63 153 0.96
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (63 bp):
GTATACCTATGTTCTAAGGAACATATGGACAGAATTACCTATGTCTTTCGAGACATATGGACA
Found at i:319950 original size:30 final size:30
Alignment explanation
Indices: 319888--319959 Score: 90
Period size: 30 Copynumber: 2.4 Consensus size: 30
319878 GTTCTTCGGA
* * * *
319888 ACCTATGGACAGTTGCCGAGGATCTTTATG
1 ACCTCTGGATAGTTACCGAGGATCCTTATG
* *
319918 ACCTCTGGATAGTTACCGAGGTTCCTTGTG
1 ACCTCTGGATAGTTACCGAGGATCCTTATG
319948 ACCTCTGGATAG
1 ACCTCTGGATAG
319960 GTCCTTCGGG
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.21, C:0.22, G:0.26, T:0.31
Consensus pattern (30 bp):
ACCTCTGGATAGTTACCGAGGATCCTTATG
Found at i:329937 original size:16 final size:18
Alignment explanation
Indices: 329918--329950 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
329908 AAATTTTATA
329918 CATATAA-A-ATAATTTT
1 CATATAATATATAATTTT
329934 CATATAATATATAATTT
1 CATATAATATATAATTT
329951 ATTGTTTAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 1 0.07
18 7 0.47
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.45
Consensus pattern (18 bp):
CATATAATATATAATTTT
Found at i:330376 original size:36 final size:37
Alignment explanation
Indices: 330336--330411 Score: 102
Period size: 37 Copynumber: 2.1 Consensus size: 37
330326 CCTCTGACTA
* * *
330336 TTAAAAG-TATTAAATTGTCA-CTAGACTATTTATATG
1 TTAAAAGTTATAAAATAGTCATC-AGACTATTCATATG
330372 TTAAAAGTTATAAAATAGTCATCAGACTATTCATATG
1 TTAAAAGTTATAAAATAGTCATCAGACTATTCATATG
330409 TTA
1 TTA
330412 CAAACTCGTC
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
36 7 0.20
37 27 0.77
38 1 0.03
ACGTcount: A:0.41, C:0.09, G:0.11, T:0.39
Consensus pattern (37 bp):
TTAAAAGTTATAAAATAGTCATCAGACTATTCATATG
Found at i:347956 original size:20 final size:21
Alignment explanation
Indices: 347931--348023 Score: 100
Period size: 21 Copynumber: 4.5 Consensus size: 21
347921 TTTTCCCAAT
*
347931 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* **
347951 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATTAAGAAAA
*
347972 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* **
347992 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATTAAGAAAA
348013 TCGCAATGCGA
1 TCGCAATGCGA
348024 TACTTGCTAT
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
20 27 0.47
21 31 0.53
ACGTcount: A:0.40, C:0.18, G:0.25, T:0.17
Consensus pattern (21 bp):
TCGCAATGCGAATTAAGAAAA
Found at i:347976 original size:41 final size:41
Alignment explanation
Indices: 347931--348023 Score: 186
Period size: 41 Copynumber: 2.3 Consensus size: 41
347921 TTTTCCCAAT
347931 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
347972 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
348013 TCGCAATGCGA
1 TCGCAATGCGA
348024 TACTTGCTAT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.40, C:0.18, G:0.25, T:0.17
Consensus pattern (41 bp):
TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
Found at i:348036 original size:41 final size:40
Alignment explanation
Indices: 347950--348084 Score: 128
Period size: 41 Copynumber: 3.3 Consensus size: 40
347940 GAATAAGTAA
** **
347950 ATCGCAACGCGAATTGGGAAAATCGCAATGCGAATAAGTAA
1 ATCGCAACGCGAATTGGGAAAATCGCAATGCG-ATACTTCT
347991 ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTTGCT
1 ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTT-CT
* * ** * *
348032 ATCGCAATGCGATAAT-ACAAAATCGCAACGAGATACTTACT
1 ATCGCAACGCGA-ATTGGGAAAATCGCAATGCGATACTT-CT
*
348073 TTCGCAACGCGA
1 ATCGCAACGCGA
348085 TACTGACTTT
Statistics
Matches: 79, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
40 4 0.05
41 73 0.92
42 2 0.03
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.20
Consensus pattern (40 bp):
ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTTCT
Found at i:348102 original size:20 final size:20
Alignment explanation
Indices: 348054--348105 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
348044 TAATACAAAA
* *
348054 TCGCAACGAGATACTTACTT
1 TCGCAACGCGATACTGACTT
348074 TCGCAACGCGATACTGACTT
1 TCGCAACGCGATACTGACTT
348094 TCGCAACGCGAT
1 TCGCAACGCGAT
348106 TTACATAGCG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (20 bp):
TCGCAACGCGATACTGACTT
Found at i:348417 original size:13 final size:13
Alignment explanation
Indices: 348399--348423 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
348389 AGGGTTAGTT
348399 TTTTTTATTTTTA
1 TTTTTTATTTTTA
348412 TTTTTTATTTTT
1 TTTTTTATTTTT
348424 GCATTATTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTTTATTTTTA
Found at i:348704 original size:20 final size:19
Alignment explanation
Indices: 348664--348709 Score: 65
Period size: 20 Copynumber: 2.4 Consensus size: 19
348654 GCAACGAGAT
*
348664 AATCGCAACGCGAAATAAA
1 AATCGCAACGCGAAACAAA
*
348683 AATTCGCAACGCGAAACCAA
1 AA-TCGCAACGCGAAACAAA
348703 AATCGCA
1 AATCGCA
348710 TTGCGATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 7 0.29
20 17 0.71
ACGTcount: A:0.48, C:0.26, G:0.15, T:0.11
Consensus pattern (19 bp):
AATCGCAACGCGAAACAAA
Found at i:348756 original size:33 final size:33
Alignment explanation
Indices: 348719--348806 Score: 140
Period size: 33 Copynumber: 2.6 Consensus size: 33
348709 ATTGCGATTT
* *
348719 TCATTTCGCGTTGCGATTGTCTGGTCGCGATAG
1 TCATTTCGCGTTGCGATTCTCTCGTCGCGATAG
*
348752 TCATTTCGCGTTGCGATTCTCTCGTTGCGATAG
1 TCATTTCGCGTTGCGATTCTCTCGTCGCGATAG
348785 TCATTTCCGCGTTGCGATTCTC
1 TCATTT-CGCGTTGCGATTCTC
348807 ATTATCTCGT
Statistics
Matches: 51, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
33 36 0.71
34 15 0.29
ACGTcount: A:0.11, C:0.25, G:0.25, T:0.39
Consensus pattern (33 bp):
TCATTTCGCGTTGCGATTCTCTCGTCGCGATAG
Found at i:348808 original size:20 final size:20
Alignment explanation
Indices: 348774--348831 Score: 64
Period size: 20 Copynumber: 2.9 Consensus size: 20
348764 GCGATTCTCT
**
348774 CGTTGCGATAGTCATTTCCG
1 CGTTGCGATTCTCATTTCCG
*
348794 CGTTGCGATTCTCATTAT-CT
1 CGTTGCGATTCTCATT-TCCG
*
348814 CGTTGCGATTTTCATTTC
1 CGTTGCGATTCTCATTTC
348832 AACCAAAAGA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
19 1 0.03
20 30 0.94
21 1 0.03
ACGTcount: A:0.14, C:0.24, G:0.19, T:0.43
Consensus pattern (20 bp):
CGTTGCGATTCTCATTTCCG
Found at i:350892 original size:42 final size:42
Alignment explanation
Indices: 350832--350954 Score: 122
Period size: 42 Copynumber: 2.9 Consensus size: 42
350822 GCCCGACTCG
* * *
350832 CCTATCATCCCTCAAGAGTCCACTCCTATCGTTGAAGAGGCC
1 CCTATCATCCCTCAAGAGTCCACTCCCACCGTTCAAGAGGCC
* * *
350874 CCTATCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCC
1 CCTATCATCCCTCAAGAGTCCACTCCCACCGTTCAAGAGGCC
* * ** * *
350916 ACTGTCATCGTTGAAGAGGTCC-CTCCCACCATTCAAGAG
1 CCTATCATCCCTCAAGA-GTCCACTCCCACCGTTCAAGAG
350955 CCCGATTCAC
Statistics
Matches: 66, Mismatches: 14, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
42 62 0.94
43 4 0.06
ACGTcount: A:0.23, C:0.37, G:0.18, T:0.23
Consensus pattern (42 bp):
CCTATCATCCCTCAAGAGTCCACTCCCACCGTTCAAGAGGCC
Found at i:350912 original size:21 final size:21
Alignment explanation
Indices: 350888--350954 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
350878 TCATTCCTCG
350888 AGAGTCCCCTCCCACCGTTCA
1 AGAGTCCCCTCCCACCGTTCA
* * ** * *
350909 AGAGGCCACTGTCATCGTTGA
1 AGAGTCCCCTCCCACCGTTCA
*
350930 AGAGGT-CCCTCCCACCATTCA
1 AGA-GTCCCCTCCCACCGTTCA
350951 AGAG
1 AGAG
350955 CCCGATTCAC
Statistics
Matches: 32, Mismatches: 13, Indels: 3
0.67 0.27 0.06
Matches are distributed among these distances:
20 1 0.03
21 30 0.94
22 1 0.03
ACGTcount: A:0.24, C:0.36, G:0.21, T:0.19
Consensus pattern (21 bp):
AGAGTCCCCTCCCACCGTTCA
Found at i:352332 original size:14 final size:14
Alignment explanation
Indices: 352313--352348 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
352303 ATTGTTTAAT
352313 TGATTTGTAAAAGG
1 TGATTTGTAAAAGG
*
352327 TGATTTGTAAAAGT
1 TGATTTGTAAAAGG
352341 TGATTTGT
1 TGATTTGT
352349 TTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.31, C:0.00, G:0.25, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGG
Found at i:352550 original size:19 final size:19
Alignment explanation
Indices: 352528--352678 Score: 80
Period size: 19 Copynumber: 8.7 Consensus size: 19
352518 CGAAATTAAA
352528 TTCGCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
*
352547 TTCGCATTGCGA--TTC--
1 TTCGCGTTGCGATTTTCAT
* *
352562 -CCTCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
* *
352580 TTCGCATTGCGA-----AA
1 TTCGCGTTGCGATTTTCAT
*
352594 TTAGCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
*
352613 TTCGCATTGCGA--TTC--
1 TTCGCGTTGCGATTTTCAT
*
352628 -TCTCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
* ** *
352646 TTCGCATTGCGATAGTAAT
1 TTCGCGTTGCGATTTTCAT
352665 TTCCGCGTTGCGAT
1 TT-CGCGTTGCGAT
352679 GAACATTAAG
Statistics
Matches: 95, Mismatches: 21, Indels: 31
0.65 0.14 0.21
Matches are distributed among these distances:
14 28 0.29
16 6 0.06
17 6 0.06
19 45 0.47
20 10 0.11
ACGTcount: A:0.15, C:0.23, G:0.21, T:0.42
Consensus pattern (19 bp):
TTCGCGTTGCGATTTTCAT
Found at i:352574 original size:33 final size:32
Alignment explanation
Indices: 352532--352658 Score: 193
Period size: 33 Copynumber: 3.9 Consensus size: 32
352522 ATTAAATTCG
352532 CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
1 CGTTGCGATTTTCATTTCGCATTGCGATT-CCT
**
352565 CGTTGCGATTTTCATTTCGCATTGCGAAATT-AG
1 CGTTGCGATTTTCATTTCGCATTGCG--ATTCCT
352598 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTC-CT
352631 CGTTGCGATTTTCATTTCGCATTGCGAT
1 CGTTGCGATTTTCATTTCGCATTGCGAT
352659 AGTAATTTCC
Statistics
Matches: 86, Mismatches: 4, Indels: 8
0.88 0.04 0.08
Matches are distributed among these distances:
31 3 0.03
33 80 0.93
35 3 0.03
ACGTcount: A:0.15, C:0.23, G:0.20, T:0.43
Consensus pattern (32 bp):
CGTTGCGATTTTCATTTCGCATTGCGATTCCT
Found at i:352621 original size:66 final size:66
Alignment explanation
Indices: 352525--352657 Score: 248
Period size: 66 Copynumber: 2.0 Consensus size: 66
352515 ACGCGAAATT
*
352525 AAATTCGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCATTTCGCATTGC
1 AAATTAGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCATTTCGCATTGC
352590 G
66 G
*
352591 AAATTAGCGTTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGC
1 AAATTAGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCATTTCGCATTGC
352656 G
66 G
352657 A
1 A
352658 TAGTAATTTC
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 65 1.00
ACGTcount: A:0.17, C:0.23, G:0.20, T:0.41
Consensus pattern (66 bp):
AAATTAGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCATTTCGCATTGC
G
Found at i:355181 original size:24 final size:24
Alignment explanation
Indices: 355147--355200 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
355137 CTGAAACATC
* *
355147 ATCAAAATCCGTGTATTGACCAAT
1 ATCAAAATCCGGGTATTGACCAAG
*
355171 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGGGTATTGACCAAG
355195 ATCAAA
1 ATCAAA
355201 TTTCGAATAC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.39, C:0.20, G:0.17, T:0.24
Consensus pattern (24 bp):
ATCAAAATCCGGGTATTGACCAAG
Found at i:356260 original size:20 final size:20
Alignment explanation
Indices: 356235--356292 Score: 98
Period size: 20 Copynumber: 2.9 Consensus size: 20
356225 ATTCATTTGA
356235 CTATCGCAACGCGAAAATGG
1 CTATCGCAACGCGAAAATGG
356255 CTATCGCAACGCGAAAATGG
1 CTATCGCAACGCGAAAATGG
* *
356275 TTATCGCAACGAGAAAAT
1 CTATCGCAACGCGAAAAT
356293 CGCAATGCGA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.17
Consensus pattern (20 bp):
CTATCGCAACGCGAAAATGG
Found at i:356352 original size:19 final size:19
Alignment explanation
Indices: 356311--356426 Score: 144
Period size: 19 Copynumber: 6.6 Consensus size: 19
356301 GAAATGAAAA
356311 TCGCATTGCGATTTTC---
1 TCGCATTGCGATTTTCATT
356327 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
356344 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
356363 TCGCATTGCGATTTTC---
1 TCGCATTGCGATTTTCATT
356379 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
*
356396 TCGCATTGCGATTTCCATT
1 TCGCATTGCGATTTTCATT
*
356415 TCGCGTTGCGAT
1 TCGCATTGCGAT
356427 AGTCTGTTTT
Statistics
Matches: 88, Mismatches: 2, Indels: 17
0.82 0.02 0.16
Matches are distributed among these distances:
14 22 0.25
16 6 0.07
17 6 0.07
19 54 0.61
ACGTcount: A:0.13, C:0.22, G:0.19, T:0.46
Consensus pattern (19 bp):
TCGCATTGCGATTTTCATT
Found at i:356367 original size:52 final size:52
Alignment explanation
Indices: 356311--356426 Score: 214
Period size: 52 Copynumber: 2.2 Consensus size: 52
356301 GAAATGAAAA
*
356311 TCGCATTGCGATTTTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCTCGTTGCGATTTTCATTTCGCATTGCGATTTCCATT
356363 TCGCATTGCGATTTTCTCGTTGCGATTTTCATTTCGCATTGCGATTTCCATT
1 TCGCATTGCGATTTTCTCGTTGCGATTTTCATTTCGCATTGCGATTTCCATT
*
356415 TCGCGTTGCGAT
1 TCGCATTGCGAT
356427 AGTCTGTTTT
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 62 1.00
ACGTcount: A:0.13, C:0.22, G:0.19, T:0.46
Consensus pattern (52 bp):
TCGCATTGCGATTTTCTCGTTGCGATTTTCATTTCGCATTGCGATTTCCATT
Found at i:358452 original size:20 final size:19
Alignment explanation
Indices: 358398--358483 Score: 82
Period size: 20 Copynumber: 4.4 Consensus size: 19
358388 TAGTTTACTT
* * *
358398 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAA-TGAATA
*
358418 TCGCAACGCGAAATGACTA
1 TCGCAACGCGAAATGAATA
**
358437 TCGCAACGCGGAAATGGTTA
1 TCGCAACGC-GAAATGAATA
* *
358457 TCGCAATGCGAAATGAAAA
1 TCGCAACGCGAAATGAATA
358476 TCGCAACG
1 TCGCAACG
358484 ACAAAATCGC
Statistics
Matches: 54, Mismatches: 11, Indels: 3
0.79 0.16 0.04
Matches are distributed among these distances:
19 26 0.48
20 28 0.52
ACGTcount: A:0.40, C:0.23, G:0.21, T:0.16
Consensus pattern (19 bp):
TCGCAACGCGAAATGAATA
Found at i:358517 original size:19 final size:19
Alignment explanation
Indices: 358490--358622 Score: 74
Period size: 19 Copynumber: 7.6 Consensus size: 19
358480 AACGACAAAA
*
358490 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
*
358509 TCGCGTTGCGA-TTT--TG
1 TCGCGTTGCGATTTTCATT
358525 T--CGTTGCGA-TTTCATT
1 TCGCGTTGCGATTTTCATT
* *
358541 TCACGTTGCGA--TT--TG
1 TCGCGTTGCGATTTTCATT
358556 T--CGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
* ***
358573 TCGCATTGCGATAGCCATT
1 TCGCGTTGCGATTTTCATT
**
358592 TCCGCGTTGCGATAGTCATT
1 T-CGCGTTGCGATTTTCATT
*
358612 TCGTGTTGCGA
1 TCGCGTTGCGA
358623 AAGTAAACTA
Statistics
Matches: 91, Mismatches: 12, Indels: 22
0.73 0.10 0.18
Matches are distributed among these distances:
13 8 0.09
14 11 0.12
15 4 0.04
16 4 0.04
17 4 0.04
18 11 0.12
19 32 0.35
20 17 0.19
ACGTcount: A:0.14, C:0.21, G:0.23, T:0.42
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:358542 original size:32 final size:33
Alignment explanation
Indices: 358495--358584 Score: 148
Period size: 32 Copynumber: 2.8 Consensus size: 33
358485 CAAAATCGCA
358495 TTGCGATTTTCATTTCGCGTTGCGATTTTGTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTTTGTCG
*
358528 TTGCGA-TTTCATTTCACGTTGCGA-TTTGTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTTTGTCG
*
358559 TTGCGATTTTCATTTCGCATTGCGAT
1 TTGCGATTTTCATTTCGCGTTGCGAT
358585 AGCCATTTCC
Statistics
Matches: 52, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
31 13 0.25
32 33 0.63
33 6 0.12
ACGTcount: A:0.12, C:0.19, G:0.22, T:0.47
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTTTGTCG
Found at i:358603 original size:20 final size:19
Alignment explanation
Indices: 358569--358622 Score: 72
Period size: 20 Copynumber: 2.8 Consensus size: 19
358559 TTGCGATTTT
*
358569 CATTTCGCATTGCGATAGC
1 CATTTCGCGTTGCGATAGC
*
358588 CATTTCCGCGTTGCGATAGT
1 CATTT-CGCGTTGCGATAGC
*
358608 CATTTCGTGTTGCGA
1 CATTTCGCGTTGCGA
358623 AAGTAAACTA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
19 14 0.45
20 17 0.55
ACGTcount: A:0.17, C:0.24, G:0.24, T:0.35
Consensus pattern (19 bp):
CATTTCGCGTTGCGATAGC
Found at i:359114 original size:18 final size:18
Alignment explanation
Indices: 359088--359132 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
359078 GTCGATCAGA
* *
359088 TGATGGCTCTGGGTGGGG
1 TGATGGCTCTGGGCGAGG
*
359106 TGATAGCTCTGGGCGAGG
1 TGATGGCTCTGGGCGAGG
359124 TGATGGCTC
1 TGATGGCTC
359133 CCGAAGTGGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.11, C:0.16, G:0.47, T:0.27
Consensus pattern (18 bp):
TGATGGCTCTGGGCGAGG
Found at i:360694 original size:22 final size:22
Alignment explanation
Indices: 360669--360712 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
360659 GATTTAGATA
360669 GACGGATTTCGCCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
*
360691 GACGGATTTCGTCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
360713 TGAGAGAGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.18, C:0.16, G:0.45, T:0.20
Consensus pattern (22 bp):
GACGGATTTCGCCGGAGATGGG
Found at i:360924 original size:20 final size:20
Alignment explanation
Indices: 360901--360952 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
360891 GATTATGTAA
*
360901 ATCGCGTTGCGAAAGTCAGT
1 ATCGCGTTGCGAAAGTAAGT
360921 ATCGCGTTGCGAAAGTAAGT
1 ATCGCGTTGCGAAAGTAAGT
*
360941 ATCTCGTTGCGA
1 ATCGCGTTGCGA
360953 TTTTGTATTA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (20 bp):
ATCGCGTTGCGAAAGTAAGT
Found at i:360986 original size:20 final size:20
Alignment explanation
Indices: 360881--360994 Score: 81
Period size: 20 Copynumber: 5.7 Consensus size: 20
360871 CGCTTTGAAA
360881 ATCGCATTGCGATTATGTAA--
1 ATCGCATTGCGA-TA-GTAAGT
* * *
360901 ATCGCGTTGCGAAAGTCAGT
1 ATCGCATTGCGATAGTAAGT
* *
360921 ATCGCGTTGCGAAAGTAAGT
1 ATCGCATTGCGATAGTAAGT
* * * *
360941 ATCTCGTTGCGATTTTGT-ATT
1 ATCGCATTGCGA--TAGTAAGT
360962 ATCGCATTGCGATAGTAAGT
1 ATCGCATTGCGATAGTAAGT
*
360982 ATCGCATTACGAT
1 ATCGCATTGCGAT
360995 TTTCCCAATT
Statistics
Matches: 76, Mismatches: 13, Indels: 10
0.77 0.13 0.10
Matches are distributed among these distances:
18 3 0.04
19 4 0.05
20 55 0.72
21 12 0.16
22 2 0.03
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (20 bp):
ATCGCATTGCGATAGTAAGT
Found at i:360995 original size:41 final size:41
Alignment explanation
Indices: 360920--360997 Score: 111
Period size: 41 Copynumber: 1.9 Consensus size: 41
360910 CGAAAGTCAG
* * * *
360920 TATCGCGTTGCGAAAGTAAGTATCTCGTTGCGATTTTGTAT
1 TATCGCATTGCGAAAGTAAGTATCGCATTACGATTTTGTAT
*
360961 TATCGCATTGCGATAGTAAGTATCGCATTACGATTTT
1 TATCGCATTGCGAAAGTAAGTATCGCATTACGATTTT
360998 CCCAATTCGC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 32 1.00
ACGTcount: A:0.24, C:0.15, G:0.22, T:0.38
Consensus pattern (41 bp):
TATCGCATTGCGAAAGTAAGTATCGCATTACGATTTTGTAT
Found at i:361013 original size:41 final size:41
Alignment explanation
Indices: 360920--361015 Score: 104
Period size: 41 Copynumber: 2.3 Consensus size: 41
360910 CGAAAGTCAG
* * * * ** *
360920 TATCGCGTTGCGAAAGTAAGTATCTCGTTGCGATTTTGTAT
1 TATCGCGTTGCGATAGTAAGTATCGCATTACGATTTTCCAA
*
360961 TATCGCATTGCGATAGTAAGTATCGCATTACGATTTTCCCAA
1 TATCGCGTTGCGATAGTAAGTATCGCATTACGATTTT-CCAA
361003 T-TCGCGTTGCGAT
1 TATCGCGTTGCGAT
361016 TTACTTATTC
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
41 43 0.96
42 2 0.04
ACGTcount: A:0.23, C:0.19, G:0.22, T:0.36
Consensus pattern (41 bp):
TATCGCGTTGCGATAGTAAGTATCGCATTACGATTTTCCAA
Found at i:372029 original size:6 final size:6
Alignment explanation
Indices: 372018--372044 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
372008 CTATCAAATC
372018 AATTAA AATTAA AATTAA AATTAA AAT
1 AATTAA AATTAA AATTAA AATTAA AAT
372045 AATTATTTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (6 bp):
AATTAA
Found at i:372898 original size:21 final size:21
Alignment explanation
Indices: 372869--372925 Score: 78
Period size: 21 Copynumber: 2.7 Consensus size: 21
372859 AATGAGTTCT
372869 AAACTCTAAATCATAAACAATA
1 AAAC-CTAAATCATAAACAATA
**
372891 AAACCTAAATCATAAATTATA
1 AAACCTAAATCATAAACAATA
*
372912 AACCCTAAATCATA
1 AAACCTAAATCATA
372926 CTTACCTCAT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
21 28 0.88
22 4 0.12
ACGTcount: A:0.56, C:0.19, G:0.00, T:0.25
Consensus pattern (21 bp):
AAACCTAAATCATAAACAATA
Found at i:372990 original size:7 final size:7
Alignment explanation
Indices: 372966--373018 Score: 54
Period size: 7 Copynumber: 7.6 Consensus size: 7
372956 AATTAATATC
*
372966 TAAACCT
1 TAAACCA
372973 TAAACTC-
1 TAAAC-CA
*
372980 TAAATCA
1 TAAACCA
*
372987 TAAACCT
1 TAAACCA
372994 TAAACCA
1 TAAACCA
373001 TAAACCA
1 TAAACCA
*
373008 TAAACCC
1 TAAACCA
373015 TAAA
1 TAAA
373019 TCCGATTATA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
6 1 0.03
7 37 0.95
8 1 0.03
ACGTcount: A:0.51, C:0.26, G:0.00, T:0.23
Consensus pattern (7 bp):
TAAACCA
Found at i:372992 original size:21 final size:21
Alignment explanation
Indices: 372966--373018 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 21
372956 AATTAATATC
*
372966 TAAACCTTAAACTC-TAAATCA
1 TAAACCTTAAAC-CATAAACCA
372987 TAAACCTTAAACCATAAACCA
1 TAAACCTTAAACCATAAACCA
*
373008 TAAACCCTAAA
1 TAAACCTTAAA
373019 TCCGATTATA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 1 0.03
21 28 0.97
ACGTcount: A:0.51, C:0.26, G:0.00, T:0.23
Consensus pattern (21 bp):
TAAACCTTAAACCATAAACCA
Found at i:373309 original size:14 final size:14
Alignment explanation
Indices: 373290--373317 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
373280 ATAAGAAACA
373290 CATGTATACTTCTT
1 CATGTATACTTCTT
373304 CATGTATACTTCTT
1 CATGTATACTTCTT
373318 AGTTCAGAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.21, G:0.07, T:0.50
Consensus pattern (14 bp):
CATGTATACTTCTT
Found at i:375884 original size:32 final size:33
Alignment explanation
Indices: 375843--375905 Score: 119
Period size: 33 Copynumber: 1.9 Consensus size: 33
375833 ACATTTTCGG
375843 AAATGTT-AAAAGATTAACATTTTAGGTTGTTA
1 AAATGTTAAAAAGATTAACATTTTAGGTTGTTA
375875 AAATGTTAAAAAGATTAACATTTTAGGTTGT
1 AAATGTTAAAAAGATTAACATTTTAGGTTGT
375906 GCTCAACGAG
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 7 0.23
33 23 0.77
ACGTcount: A:0.41, C:0.03, G:0.16, T:0.40
Consensus pattern (33 bp):
AAATGTTAAAAAGATTAACATTTTAGGTTGTTA
Found at i:377304 original size:32 final size:33
Alignment explanation
Indices: 377238--377312 Score: 89
Period size: 32 Copynumber: 2.3 Consensus size: 33
377228 ATATTTTAAG
* **
377238 TATAAAATTGAAAATTATTTTTGTTTAATAATT
1 TATAAAATTGAAAATTATTTCTGTCCAATAATT
* *
377271 TATAAAATT-AAAATTATTTCTGTCCCATCATT
1 TATAAAATTGAAAATTATTTCTGTCCAATAATT
377303 TATATAAATT
1 TATA-AAATT
377313 CTAATACTCA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
32 22 0.61
33 14 0.39
ACGTcount: A:0.41, C:0.07, G:0.04, T:0.48
Consensus pattern (33 bp):
TATAAAATTGAAAATTATTTCTGTCCAATAATT
Done.