genome.fa.s9292.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009292.1 Hibiscus syriacus cultivar Beakdansim tig00113000_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  249638

Tables:   1   

This is table  1  of  1  ( 113 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74--100	12	2.2	12	100	0	54	0	18	14	66	1.25
5584--5630	14	3.4	14	77	11	60	57	0	6	36	1.24
6523--6563	15	2.7	15	88	7	57	0	21	2	75	0.92
7032--7108	3	25.3	3	89	2	82	57	0	0	42	0.99
7338--8006	113	6.0	113	91	1	983	30	18	14	36	1.91
8726--9695	92	10.5	92	97	0	1798	36	22	14	26	1.93
10845--10919	1	75.0	1	75	0	69	0	12	0	88	0.53
10851--10918	9	7.7	9	87	9	79	0	11	0	88	0.52
10845--10916	30	2.4	30	90	0	108	0	12	0	87	0.54
22260--22306	14	3.4	14	77	11	60	57	0	6	36	1.24
23202--23242	15	2.7	15	88	7	57	0	21	2	75	0.92
23711--23787	3	25.3	3	86	2	91	58	0	0	41	0.98
25124--25149	6	4.3	6	100	0	52	65	0	0	34	0.93
25394--25420	2	13.5	2	100	0	54	51	0	0	48	1.00
32139--32257	23	5.2	23	81	4	150	27	20	24	27	1.99
32132--32257	46	2.8	46	84	6	175	29	20	23	26	1.99
35727--35767	21	2.0	21	95	0	73	26	0	31	41	1.56
38536--38587	21	2.6	21	90	6	81	34	13	5	46	1.67
39248--39272	11	2.3	11	100	0	50	76	8	16	0	1.02
39324--39348	8	3.1	8	100	0	50	76	0	24	0	0.80
39304--39362	13	4.6	12	77	12	55	74	1	23	0	0.91
42770--42821	21	2.6	21	90	6	81	34	13	5	46	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43482--43506	11	2.3	11	100	0	50	76	8	16	0	1.02
43533--43596	17	3.7	18	80	15	57	75	1	23	0	0.90
43533--43589	26	2.1	27	81	15	66	75	1	22	0	0.90
43533--43595	21	3.0	21	75	15	58	74	1	23	0	0.90
46993--47044	21	2.6	21	90	6	81	34	13	5	46	1.67
51218--51274	28	2.0	28	89	0	87	26	19	10	43	1.83
54233--54280	25	1.9	25	87	8	71	29	2	18	50	1.59
55339--55434	31	3.1	31	90	3	158	40	13	16	29	1.87
64454--64517	29	2.2	29	94	0	119	21	21	10	45	1.83
72147--72268	14	9.5	13	67	20	53	70	3	4	22	1.19
72398--72458	2	30.5	2	100	0	122	50	0	0	49	1.00
85669--85734	16	4.1	16	70	25	59	65	1	1	31	1.11
85835--85873	2	19.5	2	100	0	78	51	0	0	48	1.00
89804--90875	82	13.1	82	82	5	1125	27	16	21	34	1.95
89633--90875	164	7.6	163	82	3	1286	27	16	21	34	1.95
90611--91107	82	6.1	81	77	8	206	24	17	20	36	1.94
89870--91058	328	3.6	323	81	6	1200	25	16	21	35	1.95
90921--91115	82	2.4	82	81	5	225	23	21	18	36	1.95
91795--91909	51	2.3	51	86	3	160	40	13	20	25	1.89
91947--92165	92	2.4	90	78	5	219	41	21	15	22	1.89
94666--94868	99	2.0	100	87	2	293	34	17	11	35	1.86
98833--98954	24	5.3	24	59	15	60	30	23	4	40	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98804--99016	45	4.8	45	88	4	288	30	22	7	40	1.80
101116--101159	18	2.5	17	92	7	79	18	31	0	50	1.47
102173--102207	2	18.0	2	94	5	63	51	0	0	48	1.00
102195--102268	37	2.1	37	82	10	91	54	9	4	32	1.52
102396--102455	24	2.5	24	77	17	63	70	0	3	26	1.03
102393--102488	21	4.6	21	70	16	58	65	1	4	29	1.18
102418--102534	55	2.2	54	80	11	125	62	1	5	30	1.27
102625--102688	11	5.8	11	77	15	62	62	1	1	34	1.14
102628--102691	8	8.5	8	72	27	52	62	1	1	34	1.14
103047--103148	37	2.8	37	86	0	105	28	14	14	42	1.85
103689--104319	105	6.0	105	90	3	898	21	17	26	34	1.95
104517--104587	36	2.0	36	94	0	124	36	16	22	23	1.94
104510--104805	104	2.9	104	90	1	454	37	12	20	29	1.90
104922--105032	36	3.1	36	72	2	107	43	13	17	26	1.86
104854--105050	72	2.7	74	81	10	210	41	13	17	27	1.87
106191--106727	183	2.9	183	96	0	986	30	21	20	27	1.98
112124--112163	2	20.0	2	100	0	80	50	0	0	50	1.00
112638--112686	18	2.7	18	84	9	73	65	2	4	28	1.22
113027--113128	37	2.8	37	84	0	123	30	13	13	42	1.83
150676--150742	33	2.0	33	97	0	125	28	16	23	31	1.96
150802--150840	20	2.0	20	84	0	51	20	7	20	51	1.72
150842--150946	45	2.3	45	85	6	133	40	6	23	29	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
165377--165431	25	2.2	26	80	9	60	36	7	5	50	1.53
172338--172555	54	4.0	54	93	0	364	34	18	17	29	1.94
173515--173558	20	2.1	21	83	4	54	45	29	2	22	1.65
177319--177366	23	2.0	24	96	4	89	47	4	16	31	1.65
181945--181982	20	1.9	20	94	0	67	26	31	26	15	1.96
181988--182027	21	1.9	21	89	0	62	25	40	25	10	1.86
184950--184974	13	1.9	13	100	0	50	72	4	0	24	1.02
184950--184981	17	1.9	16	93	6	55	75	6	0	18	1.01
185605--185637	13	2.5	13	95	0	57	75	0	15	9	1.03
193573--193878	38	8.2	37	77	14	208	45	3	8	42	1.50
193581--193766	36	5.3	32	77	16	133	44	3	9	43	1.54
193729--193880	38	3.9	38	88	5	216	48	2	5	43	1.41
195294--195350	26	2.2	26	87	0	78	22	14	1	61	1.42
195353--195391	16	2.4	17	86	4	53	25	10	0	64	1.25
201083--201122	21	1.9	22	90	10	66	12	10	40	37	1.77
204520--205179	81	8.2	81	84	4	708	35	10	22	31	1.88
204520--205179	242	2.7	242	84	4	825	35	10	22	31	1.88
205505--205561	26	2.3	24	80	14	62	40	0	12	47	1.41
208017--208096	38	2.2	35	88	6	115	43	2	8	45	1.48
208155--208374	42	5.7	39	82	11	242	45	2	6	45	1.42
208258--208340	33	2.4	33	88	9	114	45	1	6	46	1.35
209210--209261	24	2.2	24	82	0	59	25	13	1	59	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
209219--209266	24	2.0	24	92	4	80	20	14	0	64	1.28
210771--210805	17	2.1	17	100	0	70	28	17	5	48	1.69
219880--219921	18	2.4	18	84	7	52	54	0	0	45	0.99
220223--220255	14	2.3	15	89	5	50	48	0	0	51	1.00
220237--220283	22	2.1	23	84	4	60	48	2	4	44	1.34
220535--220559	12	2.1	12	100	0	50	40	0	8	52	1.31
226728--226761	16	2.1	16	88	0	50	20	17	11	50	1.77
229517--229659	74	1.9	74	88	0	214	21	18	27	32	1.97
229955--230016	26	2.4	26	94	0	106	45	4	8	41	1.55
229955--230016	12	4.7	14	80	15	78	45	4	8	41	1.55
231762--231806	13	3.5	13	81	6	56	46	8	8	35	1.66
232245--232367	21	5.7	21	82	10	133	34	15	27	22	1.94
232245--232346	23	4.6	22	84	8	136	33	15	28	22	1.95
232245--232346	44	2.3	44	100	0	204	33	15	28	22	1.95
239364--239403	20	1.9	22	85	10	57	40	12	30	17	1.86
240451--240503	24	2.2	24	90	6	81	30	24	20	24	1.99
240636--240664	15	2.0	15	93	6	51	75	3	20	0	0.94
243398--243437	20	1.9	22	85	10	57	37	12	32	17	1.87
244983--245020	20	1.9	20	94	0	67	31	7	36	23	1.84
244983--245032	20	2.5	20	87	6	66	34	8	34	24	1.84
246231--246327	28	3.3	28	63	10	68	27	12	21	38	1.89
246196--246489	59	5.0	59	90	2	448	32	12	20	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
246196--246485	119	2.5	117	90	2	438	32	12	20	34	1.90
248117--248158	22	1.9	22	100	0	84	33	11	9	45	1.73
248734--248763	15	2.0	15	100	0	60	20	6	13	60	1.55

Tables:   1

The End!