Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009293.1 Hibiscus syriacus cultivar Beakdansim tig00113002_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65227

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51--185
12
11.2
12
72
17
93
54
4
2
38
1.33
71--169
2
52.0
2
70
23
63
52
5
2
40
1.35
47--185
7
19.7
7
72
17
101
55
4
2
38
1.32
48--185
9
14.8
9
69
21
72
55
4
2
38
1.32
1198--1275
32
2.4
32
100
0
156
38
2
10
48
1.51
1220--1273
18
3.2
18
65
20
53
38
3
9
48
1.53
5010--5035
12
2.2
12
100
0
52
50
7
15
26
1.71
10989--11031
19
2.3
18
80
4
50
16
6
4
72
1.24
14685--14725
17
2.3
18
87
4
57
65
7
7
19
1.41
15351--15390
21
2.0
21
95
5
73
20
15
15
50
1.79
18948--19426
237
2.0
237
85
0
636
39
16
24
19
1.92
20644--20696
21
2.5
21
96
0
97
15
24
24
35
1.94
20792--20847
15
3.6
15
79
9
67
42
12
12
32
1.80
20795--20845
17
3.1
17
77
11
61
43
11
9
35
1.75
21222--21276
13
4.2
13
75
13
58
49
12
3
34
1.59
21262--21360
33
3.0
33
91
1
155
45
14
8
32
1.74
21355--21394
21
1.9
21
94
0
71
47
7
15
30
1.72
23687--23726
12
3.1
12
80
19
53
20
17
15
47
1.83
23686--23725
15
2.9
14
85
14
57
20
17
15
47
1.83
24946--25031
32
2.7
33
91
5
133
54
11
15
18
1.70
27712--27805
45
2.1
45
100
0
188
29
18
20
31
1.96
31504--31573
37
1.9
36
88
2
104
47
4
0
48
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35959--36004
18
2.6
18
92
0
74
47
10
17
23
1.79
36094--36131
16
2.4
16
100
0
76
13
21
7
57
1.60
39517--39572
20
2.8
19
86
5
67
23
28
14
33
1.94
48794--48971
90
2.0
90
93
0
302
44
7
11
36
1.69
49435--49505
2
35.5
2
94
0
124
46
0
2
50
1.16
49560--49626
25
2.6
26
90
4
109
44
8
20
25
1.80
50276--50334
29
2.0
29
100
0
118
49
13
13
23
1.78
54954--55012
29
2.0
29
100
0
118
49
13
13
23
1.78
58771--58804
7
5.1
7
92
7
54
14
0
0
85
0.60
58772--58801
6
4.8
6
95
4
51
13
0
0
86
0.57
59159--59189
16
1.9
16
100
0
62
12
25
3
58
1.50
59990--60075
24
3.6
24
79
14
106
25
11
11
51
1.72
62642--62693
20
2.6
20
84
6
61
28
23
19
28
1.98
62875--62903
7
4.1
7
100
0
58
27
0
0
72
0.85

Tables:   1

The End!