genome.fa.s9294.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009294.1 Hibiscus syriacus cultivar Beakdansim tig00113003_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46348

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4--176	20	8.6	20	89	4	215	30	26	19	24	1.98
23--176	81	1.9	81	87	0	227	30	25	19	24	1.98
2548--2580	17	1.9	17	88	11	50	24	18	12	45	1.83
2889--3039	21	7.2	21	62	10	58	22	37	19	21	1.95
2837--3039	42	4.8	42	80	2	203	22	36	18	22	1.95
2834--3009	84	2.1	84	100	0	352	21	38	17	23	1.93
2834--3039	84	2.5	84	92	1	297	21	36	18	22	1.95
4396--4431	14	2.6	14	95	0	63	30	0	25	44	1.54
4538--4584	19	2.5	19	96	0	85	44	21	21	12	1.85
4609--4759	19	8.7	19	61	21	62	15	21	21	41	1.89
4613--4739	33	3.9	32	84	8	175	14	22	20	42	1.88
4606--4730	66	1.9	66	96	0	232	16	22	20	41	1.90
7030--7054	12	2.1	12	100	0	50	0	28	0	72	0.86
8070--8118	21	2.4	21	86	3	64	40	16	22	20	1.91
8145--8194	20	2.5	20	80	0	73	38	22	18	22	1.94
8408--8494	20	4.4	20	77	2	95	41	24	18	16	1.90
8540--8607	19	3.6	19	100	0	136	14	20	16	48	1.81
8521--8617	38	2.8	33	82	14	131	13	22	18	45	1.84
8744--8780	14	2.6	14	86	0	56	48	21	0	29	1.50
10647--10700	20	2.7	20	91	0	90	38	22	22	16	1.93
10687--10765	32	2.4	33	87	2	115	48	18	18	13	1.81
10772--10834	18	3.7	18	76	20	80	14	20	20	44	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10819--10873	20	2.8	19	83	8	65	16	23	23	36	1.94
11356--11400	18	2.5	18	85	0	63	15	15	42	26	1.87
12722--12820	20	4.9	20	92	0	117	40	22	18	19	1.91
13083--13126	22	2.0	22	90	0	70	20	15	43	20	1.88
13294--13388	41	2.3	41	87	0	145	24	16	22	36	1.94
13294--13408	20	5.7	19	77	9	104	24	16	22	36	1.94
13294--13411	61	1.9	62	86	8	170	23	16	22	38	1.93
13294--13429	61	2.2	61	82	8	152	22	18	22	36	1.95
30864--30942	30	2.6	31	84	6	108	39	13	7	39	1.74
42952--43267	161	2.0	157	93	3	544	33	12	13	40	1.82
43656--43703	18	2.8	17	80	3	51	31	27	6	35	1.82

Tables:   1

The End!