genome.fa.s9295.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009295.1 Hibiscus syriacus cultivar Beakdansim tig00113004_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  136815

Tables:   1   

This is table  1  of  1  ( 89 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2425--2476	21	2.5	21	81	9	63	42	19	21	17	1.89
2465--2578	20	5.7	20	81	6	122	31	24	18	25	1.97
2425--2557	61	2.2	62	81	6	155	37	21	18	21	1.94
2444--2578	61	2.2	61	84	2	173	34	23	18	23	1.96
3092--3139	19	2.5	20	79	3	62	47	25	16	10	1.78
3135--3318	19	10.1	19	76	13	172	11	22	20	44	1.84
3135--3318	33	5.1	38	82	8	172	11	22	20	44	1.84
5309--5397	42	2.1	42	80	0	106	21	38	16	23	1.93
6777--6812	14	2.6	14	95	0	63	30	0	25	44	1.54
6919--6965	19	2.5	19	92	0	76	46	21	19	12	1.82
6996--7120	19	7.4	19	62	24	73	16	20	18	44	1.87
6994--7120	33	3.9	32	83	8	166	16	21	18	43	1.88
6987--7119	66	2.0	66	92	0	221	18	20	18	42	1.89
9412--9436	12	2.1	12	100	0	50	0	28	0	72	0.86
9611--9664	24	2.2	24	90	0	81	38	20	16	24	1.92
10245--10285	20	2.0	20	100	0	82	34	26	24	14	1.94
10301--10368	19	3.8	19	83	12	92	14	22	16	47	1.82
10363--10400	20	1.9	20	94	0	67	15	21	23	39	1.92
10486--10522	14	2.6	14	86	0	56	48	21	0	29	1.50
12387--12454	20	3.5	19	82	6	82	38	23	23	14	1.92
12443--12498	14	3.7	14	78	17	67	50	25	16	8	1.74
12427--12505	32	2.4	33	93	2	142	46	22	18	11	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12534--12591	14	3.9	14	79	16	71	10	17	24	48	1.78
12517--12607	32	2.8	33	94	3	166	12	18	21	47	1.81
12592--12646	20	2.8	19	83	8	65	16	23	23	36	1.94
13079--13123	18	2.5	18	88	0	72	15	13	44	26	1.83
14439--14497	20	3.0	20	87	0	73	42	22	18	16	1.89
14751--14794	22	2.0	22	90	0	70	20	15	43	20	1.88
14982--15034	20	2.7	20	90	0	79	26	18	26	28	1.98
15002--15079	41	1.9	41	83	0	102	23	15	23	38	1.92
15065--15157	41	2.3	41	94	0	123	18	22	18	40	1.91
15070--15140	21	3.4	21	76	3	90	15	22	18	43	1.87
15084--15157	20	3.7	20	76	3	85	17	21	18	41	1.90
16171--16200	6	5.0	6	100	0	60	33	16	0	50	1.46
19623--19914	108	2.7	108	92	4	466	26	17	26	30	1.97
23090--23166	31	2.5	31	93	0	136	31	15	7	45	1.75
23304--23384	40	2.1	38	84	11	103	49	9	14	25	1.75
29174--29221	23	2.1	23	100	0	96	45	4	8	41	1.53
36962--36996	16	2.3	15	90	5	52	57	0	2	40	1.14
38151--38196	21	2.2	22	84	7	60	15	6	15	63	1.50
38318--38374	29	1.9	30	85	3	80	56	17	15	10	1.67
44965--45001	3	12.3	3	88	0	56	29	0	2	67	1.04
47554--47645	38	2.4	38	85	0	121	27	20	27	25	1.99
48183--48219	17	2.1	18	85	14	51	45	29	0	24	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48646--48708	15	4.2	15	93	0	108	30	33	22	14	1.93
48646--48708	30	2.1	30	100	0	126	30	33	22	14	1.93
48793--48866	29	2.6	29	97	2	141	18	21	16	43	1.88
48882--48917	12	3.0	12	91	0	63	36	25	5	33	1.79
60926--61063	43	3.2	42	80	10	138	26	18	5	49	1.70
60953--61084	43	3.1	43	78	10	119	28	20	3	46	1.68
61737--61875	42	3.4	43	73	12	123	46	0	2	50	1.21
61816--61866	22	2.3	21	80	12	59	52	0	1	45	1.12
61760--61879	39	3.0	39	72	10	100	49	0	2	47	1.20
61927--62013	23	4.0	22	70	21	58	55	1	2	41	1.20
61941--61997	28	2.0	29	86	10	82	54	0	1	43	1.10
61935--61991	30	1.9	30	82	13	73	54	0	1	43	1.10
61947--62017	21	3.4	20	71	21	65	56	1	2	39	1.23
61959--62035	21	3.6	20	69	23	59	53	2	3	40	1.33
66923--66961	21	1.9	19	85	10	51	41	0	5	53	1.23
70305--70341	6	6.0	6	96	3	65	35	0	64	0	0.94
79600--79683	37	2.3	38	85	6	111	33	4	17	44	1.70
81054--81401	119	3.0	118	92	4	595	50	10	5	33	1.60
91491--91655	76	2.2	75	86	3	233	30	2	11	55	1.48
91789--91848	30	2.0	30	93	6	104	33	6	16	43	1.74
91938--92003	21	3.1	21	86	8	89	21	40	25	12	1.88
91938--92003	22	3.0	22	84	10	91	21	40	25	12	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92094--92136	21	2.0	21	95	0	77	23	20	27	27	1.99
92164--92203	20	1.9	22	90	10	66	37	40	10	12	1.77
95092--95151	29	2.0	30	90	6	95	35	8	15	41	1.77
95241--95283	22	1.9	23	85	4	61	20	39	25	13	1.90
95269--95298	15	2.0	15	100	0	60	26	33	26	13	1.93
95391--95433	21	2.0	21	95	0	77	23	20	27	27	1.99
95715--95784	34	2.1	32	86	5	95	31	15	30	22	1.95
96675--96705	9	3.4	9	100	0	62	22	0	0	77	0.77
96666--96718	18	3.1	18	76	15	58	26	0	0	73	0.83
96677--96718	15	2.7	15	85	10	50	23	0	0	76	0.79
96668--96718	24	2.1	25	85	7	70	25	0	0	74	0.82
98309--98342	15	2.3	15	100	0	68	44	23	26	5	1.76
102244--102283	20	2.0	21	95	5	73	10	0	5	85	0.75
104154--104346	65	2.7	70	84	10	200	28	1	10	59	1.41
104239--104374	65	2.1	65	83	4	168	27	0	13	57	1.42
104995--105046	16	3.1	16	81	13	52	26	1	0	71	0.97
110105--110147	18	2.4	19	81	18	56	6	37	2	53	1.41
121628--121681	13	4.3	13	77	17	60	18	5	5	70	1.27
121658--121702	21	2.1	22	91	4	74	20	0	11	68	1.19
128824--128891	3	23.0	3	79	8	68	67	2	0	29	1.05
128824--128893	19	3.5	20	75	9	63	68	2	0	28	1.04
129065--129954	76	11.7	76	96	0	1575	35	21	21	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
133285--133576	81	3.6	81	96	1	523	39	21	11	26	1.88

Tables:   1

The End!