Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009296.1 Hibiscus syriacus cultivar Beakdansim tig00113005_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71993

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9253--9287
12
2.9
12
100
0
70
25
34
31
8
1.86
9466--9507
22
1.9
22
85
0
57
59
14
7
19
1.57
10094--10133
11
3.6
11
87
12
55
30
27
12
30
1.93
10119--10170
22
2.3
23
90
9
90
28
19
19
32
1.96
11392--11473
7
11.7
7
80
0
74
21
1
32
43
1.61
11389--11470
21
3.9
20
76
13
85
23
1
30
45
1.61
18889--18942
21
2.5
22
74
14
58
35
12
16
35
1.87
21432--21470
18
2.2
18
90
0
60
33
15
17
33
1.92
24657--24731
37
2.0
37
85
10
100
45
0
4
50
1.20
28189--28213
5
5.0
5
100
0
50
40
0
0
60
0.97
28626--28652
14
1.9
14
100
0
54
14
22
0
62
1.31
29323--29362
22
1.9
21
85
10
55
52
5
0
42
1.23
30971--31020
19
2.6
19
93
0
82
26
14
22
38
1.91
31029--31061
17
1.9
17
100
0
66
24
18
18
39
1.92
32145--32235
29
3.1
29
91
0
155
49
16
19
14
1.79
33282--33328
21
2.2
21
85
7
60
48
29
0
21
1.50
42689--42727
16
2.5
16
87
4
53
35
5
23
35
1.77
44280--44337
9
5.8
10
84
15
68
37
0
0
62
0.96
44280--44325
3
15.7
3
82
13
60
34
0
0
65
0.93
44454--44552
25
4.0
25
94
3
166
36
20
15
28
1.92
47847--47890
17
2.6
17
96
0
79
36
4
22
36
1.75
57849--57901
6
8.2
6
76
15
52
79
0
18
1
0.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57850--57905
26
2.1
27
83
9
71
78
0
19
1
0.84
57849--57906
20
2.8
20
77
12
57
79
0
18
1
0.82
57849--57901
13
4.1
12
77
15
52
79
0
18
1
0.83
59343--59383
3
13.0
3
90
10
64
34
0
0
65
0.93
59343--59383
13
3.2
12
90
10
64
34
0
0
65
0.93
59512--59604
25
3.7
25
94
2
152
36
18
15
30
1.91
61916--61953
15
2.4
16
91
8
60
31
5
2
60
1.33
66805--66851
20
2.3
20
96
0
85
25
21
4
48
1.68
66814--66858
20
2.2
20
88
0
63
26
24
4
44
1.72

Tables:   1

The End!