genome.fa.s9297.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009297.1 Hibiscus syriacus cultivar Beakdansim tig00113008_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  292623

Tables:   1   

This is table  1  of  1  ( 108 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14173--14219	23	2.0	23	87	0	67	25	27	23	23	2.00
14198--14501	149	2.0	149	97	0	572	37	20	15	26	1.92
14979--15019	21	2.0	21	90	0	64	9	36	31	21	1.86
14980--15131	67	2.3	67	95	1	268	15	26	28	29	1.96
24978--25020	21	2.0	21	86	0	59	30	27	25	16	1.97
25000--25151	68	2.3	67	88	1	214	28	28	26	16	1.97
25454--25519	29	2.3	29	91	0	105	37	10	12	39	1.77
25539--25598	30	2.0	31	90	3	95	36	6	23	33	1.81
25818--25884	22	3.0	22	100	0	134	19	26	26	26	1.99
27667--27737	2	35.5	2	92	0	115	45	1	2	50	1.25
30728--30812	29	2.9	30	75	19	99	42	4	14	38	1.66
34504--34543	19	2.1	19	100	0	80	15	22	20	42	1.88
34520--34661	60	2.4	60	84	0	194	23	30	11	33	1.91
39256--39297	21	2.0	21	86	9	59	42	0	0	57	0.99
40911--40980	27	2.7	26	77	4	77	50	2	5	41	1.41
41430--41474	24	1.9	23	82	13	56	51	2	0	46	1.13
45053--45229	88	2.0	88	91	0	282	23	17	23	35	1.95
46498--46542	21	2.1	21	87	0	63	31	28	24	15	1.96
46964--47020	20	2.7	22	78	15	66	43	5	14	36	1.67
47547--47624	31	2.5	31	83	4	86	21	19	23	35	1.96
47597--47696	30	3.3	30	91	2	148	21	22	26	31	1.98
51121--51165	21	2.1	21	87	0	63	31	28	24	15	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51589--51645	20	2.7	22	78	15	66	43	5	14	36	1.67
52224--52323	30	3.3	30	91	2	148	21	22	26	31	1.98
54116--54218	35	2.9	34	89	2	152	38	20	21	19	1.93
62737--62796	3	20.0	3	89	6	95	63	1	0	35	1.05
63140--64461	113	11.7	113	92	1	2147	27	18	15	39	1.90
65179--65493	115	2.7	115	96	1	571	32	21	13	32	1.92
66635--66710	22	3.5	21	85	7	98	0	18	0	81	0.69
66633--66710	30	2.6	30	88	10	106	0	19	0	80	0.71
74040--74071	15	2.1	15	94	0	55	46	9	18	25	1.79
79534--79573	3	13.3	3	94	0	71	65	0	0	35	0.93
81449--81801	170	2.1	168	84	6	457	36	15	12	35	1.85
85848--85894	18	2.8	17	83	6	60	31	6	31	29	1.83
86438--86520	33	2.5	33	88	2	112	42	38	7	12	1.70
86503--86577	31	2.4	31	81	0	87	41	32	5	21	1.75
89012--89056	20	2.2	20	100	0	90	0	24	8	66	1.20
89024--89069	11	4.4	11	72	10	51	0	26	4	69	1.07
95947--96007	2	31.0	2	96	3	115	50	0	0	49	1.00
96418--96456	12	3.2	12	82	10	53	25	0	0	74	0.82
96751--96790	10	4.2	10	84	15	50	70	0	0	30	0.88
97740--97771	2	16.0	2	100	0	64	50	0	0	50	1.00
100069--100403	43	7.8	43	94	1	557	30	25	27	16	1.97
103189--103220	13	2.5	13	94	0	55	21	21	40	15	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103190--103249	31	1.9	31	89	0	93	20	20	41	18	1.90
108118--108195	31	2.5	30	79	8	84	41	1	3	53	1.27
113431--113487	27	2.1	27	100	0	114	26	10	22	40	1.86
114655--114679	3	8.3	3	100	0	50	68	32	0	0	0.90
115160--115207	2	24.0	2	100	0	96	50	0	0	50	1.00
115688--115735	22	2.1	23	81	11	55	50	4	10	35	1.56
116095--116136	22	1.9	22	85	0	57	35	4	7	52	1.50
117406--117467	2	31.5	2	93	3	108	51	0	1	46	1.10
117640--117770	60	2.2	60	81	8	151	32	20	3	42	1.70
117670--117800	60	2.2	60	81	2	147	31	24	3	40	1.73
117922--118114	60	3.2	59	78	7	183	39	4	22	33	1.73
120275--120306	2	16.5	2	93	6	57	46	0	0	53	1.00
120275--120311	15	2.5	15	91	4	58	43	0	0	56	0.99
121459--121496	2	19.0	2	100	0	76	50	0	0	50	1.00
124773--124858	3	28.7	3	86	0	118	68	29	0	2	1.02
127933--128066	45	3.0	45	80	10	150	25	24	19	30	1.98
142120--142167	23	2.1	23	100	0	96	22	25	22	29	1.99
156901--156942	15	2.6	16	82	17	52	61	0	4	33	1.17
159518--159564	18	2.6	18	93	0	76	36	19	21	23	1.95
160624--160683	26	2.3	26	94	0	102	8	6	33	51	1.58
160725--160879	72	2.2	73	94	3	287	45	14	0	40	1.45
161083--161110	13	2.2	13	100	0	56	32	14	14	39	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
164032--164062	2	15.5	2	100	0	62	48	0	0	51	1.00
175159--175284	59	2.1	60	80	10	134	34	19	6	38	1.78
180473--180501	14	2.0	15	93	6	51	41	10	0	48	1.37
181920--181960	21	2.0	22	85	9	59	29	14	34	21	1.93
189664--190018	177	2.0	177	99	0	701	24	22	19	34	1.96
195066--195125	5	11.8	5	77	10	59	6	20	51	21	1.70
195059--195126	22	3.2	22	81	10	88	10	20	48	20	1.78
202417--202449	17	1.9	17	100	0	66	12	24	42	21	1.86
205471--205513	17	2.5	17	84	3	50	11	23	2	62	1.40
209392--209457	20	3.3	20	84	0	87	16	19	33	30	1.94
210223--210248	2	13.0	2	100	0	52	50	0	0	50	1.00
210635--210710	21	3.6	21	92	0	134	32	13	25	28	1.93
212621--212657	18	2.1	17	90	5	56	8	2	18	70	1.25
220677--220837	85	1.9	86	84	6	220	29	16	17	36	1.92
220816--220858	22	2.0	21	86	4	59	37	16	11	34	1.85
221324--221407	36	2.5	33	78	7	80	35	19	16	28	1.93
224068--226667	631	4.1	632	86	3	3498	35	14	12	37	1.84
229935--230055	59	2.1	59	87	6	174	35	17	17	29	1.93
229943--230069	59	2.2	59	82	5	159	37	18	14	29	1.91
238916--238986	33	2.2	32	80	5	79	9	14	0	76	1.03
238958--238994	19	1.9	19	88	0	56	16	2	0	81	0.81
239336--239421	44	2.0	44	88	0	127	34	18	18	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
239342--239463	44	2.8	44	77	5	120	33	19	18	27	1.96
241853--241914	24	2.6	23	80	12	63	4	17	0	77	0.94
241883--242010	7	18.4	7	72	20	58	6	17	0	76	0.98
241918--242010	7	13.6	7	77	13	63	6	17	0	76	0.99
241895--242010	14	7.6	14	76	18	99	6	17	0	76	0.97
241959--242032	14	5.4	14	87	3	53	4	16	0	79	0.87
244023--244062	16	2.5	17	76	15	50	62	2	17	17	1.44
248107--248174	34	2.0	34	100	0	136	26	2	14	55	1.53
253207--253265	24	2.4	25	86	8	77	32	6	5	55	1.48
255106--255148	15	2.9	15	80	10	52	30	2	2	65	1.18
256433--256457	11	2.3	11	100	0	50	32	0	8	60	1.26
265911--265958	25	2.0	24	87	4	69	25	4	16	54	1.60
277303--277354	27	2.0	26	88	7	79	71	0	13	15	1.15
277317--277356	19	2.0	20	95	4	73	72	0	12	15	1.12
278357--279046	108	6.3	107	92	3	1078	28	15	28	28	1.96
278357--279046	55	12.7	55	91	4	1060	28	15	28	28	1.96
286204--286240	19	1.9	19	94	0	65	35	2	2	59	1.26
287106--287166	28	2.1	30	84	6	81	40	11	4	42	1.62
287110--287175	28	2.4	28	79	5	71	43	12	6	37	1.67
291760--291800	22	2.0	22	85	9	59	53	9	19	17	1.70

Tables:   1

The End!