genome.fa.s9299.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009299.1 Hibiscus syriacus cultivar Beakdansim tig00113019_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  148829

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9392--9432	2	20.5	2	100	0	82	0	48	0	51	1.00
18342--18440	29	3.4	29	80	5	110	23	0	30	46	1.52
18343--18470	14	9.0	13	73	18	78	25	0	28	45	1.54
19655--19681	2	13.5	2	100	0	54	48	0	0	51	1.00
25817--25902	39	2.2	39	91	0	136	25	19	32	22	1.97
32821--32849	2	14.5	2	100	0	58	48	0	0	51	1.00
44092--44182	6	14.5	6	71	21	62	1	16	1	81	0.81
44074--44150	14	5.4	14	80	13	77	0	16	2	80	0.82
44072--44147	20	3.8	20	81	6	84	0	17	2	80	0.83
44092--44158	20	3.2	20	87	6	89	0	14	1	83	0.72
44072--44177	18	5.7	18	75	16	92	0	17	1	80	0.81
44095--44182	34	2.5	34	81	7	97	1	17	1	80	0.83
46803--46870	22	3.0	22	97	2	127	26	27	26	19	1.99
47084--47142	30	2.0	30	93	0	100	33	23	3	38	1.72
47526--47662	67	2.1	67	88	1	204	17	27	26	28	1.98
53729--53796	22	3.0	22	97	2	127	26	27	26	19	1.99
54010--54068	30	2.0	30	93	0	100	33	23	3	38	1.72
54434--54584	66	2.3	67	87	4	216	17	25	28	28	1.97
56112--56206	45	2.1	45	92	0	154	54	13	4	27	1.57
57308--57356	9	5.3	9	81	13	64	81	0	18	0	0.69
57312--57401	21	4.3	20	77	18	94	81	0	17	1	0.76
57315--57386	9	8.3	9	80	14	57	80	0	18	1	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59238--59356	62	1.9	62	89	3	186	28	20	15	36	1.93
79840--79876	14	2.6	14	95	0	65	56	10	16	16	1.66
81833--81955	57	2.2	57	100	0	246	31	22	16	29	1.96
89211--89289	17	4.6	17	82	6	88	6	43	24	26	1.78
89203--89289	34	2.6	34	81	3	113	6	42	25	25	1.79
92268--92321	26	2.1	26	100	0	108	40	27	7	24	1.81
102368--102402	18	2.0	18	88	5	54	60	0	8	31	1.27
102822--102866	15	3.2	15	69	18	51	46	11	20	22	1.81
104758--104871	57	2.0	57	92	0	192	27	25	19	28	1.99
107752--107825	39	1.9	37	84	10	96	45	6	6	40	1.57
108630--108689	11	5.6	11	71	15	54	56	0	1	41	1.09
108816--108906	14	6.6	14	80	2	94	42	31	2	23	1.66
108871--108914	13	3.3	13	81	6	52	38	34	4	22	1.75
108816--108906	7	13.1	7	78	2	76	42	31	2	23	1.66
108977--109020	14	3.1	14	78	12	54	47	34	0	18	1.49
112361--112424	20	3.0	21	81	11	67	26	20	20	32	1.97
112412--112572	64	2.5	64	78	11	154	24	24	18	32	1.97
113522--113565	22	2.0	22	100	0	88	31	22	36	9	1.86
116719--116770	26	1.9	27	81	14	63	30	21	1	46	1.62
117449--117506	20	2.7	20	81	10	62	29	22	17	31	1.96
120434--120822	20	19.5	20	85	5	473	34	25	19	20	1.96
121504--121550	24	2.0	24	87	8	69	25	14	21	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
121725--121749	12	2.1	12	100	0	50	72	0	28	0	0.86
124031--124304	19	15.4	19	81	15	345	46	18	20	14	1.83
124059--124304	71	3.4	74	84	11	293	46	17	21	14	1.83
124059--124326	109	2.5	104	89	6	437	46	17	21	14	1.84
124031--124341	161	2.0	157	91	5	500	45	18	20	15	1.85
124059--124326	52	5.0	52	90	4	428	46	17	21	14	1.84
124333--124434	19	5.6	19	85	12	151	14	23	17	44	1.86
124541--124577	14	2.6	14	91	0	65	45	21	0	32	1.52
126532--126588	14	3.7	14	77	20	60	45	22	21	10	1.82
126513--126604	33	2.8	33	93	1	159	46	21	20	10	1.81
126476--126609	19	7.6	19	75	18	119	45	23	19	11	1.82
126605--126733	19	7.3	19	75	17	125	8	17	28	45	1.77
126605--126696	33	2.8	33	93	3	150	7	18	28	45	1.76
126777--127246	93	5.1	93	97	2	894	46	18	12	22	1.83
126777--127246	184	2.6	184	99	0	922	46	18	12	22	1.83
128941--129054	33	3.5	33	92	2	203	44	21	24	9	1.82
128948--129059	14	6.8	18	73	22	95	42	22	25	9	1.84
129071--129125	14	3.6	14	73	21	56	9	25	23	41	1.83
129055--129125	33	2.2	33	94	0	124	8	22	25	43	1.81
129066--129147	33	2.5	33	89	2	119	9	25	21	42	1.84
129078--129166	20	4.8	20	72	19	75	12	24	19	43	1.85
129246--129316	33	2.2	33	92	0	115	47	18	22	11	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
129498--129552	22	2.5	22	81	0	74	20	16	40	23	1.91
129698--129871	20	8.6	20	83	5	217	19	19	26	34	1.96
129697--129890	20	9.6	20	81	2	66	19	19	25	35	1.95
129698--129871	60	2.9	60	85	0	249	19	19	26	34	1.96
129946--129993	20	2.4	20	100	0	96	22	10	25	41	1.85
133873--133905	9	3.8	9	96	4	59	21	0	9	69	1.15
139579--139619	20	2.0	20	100	0	82	29	9	9	51	1.67
139585--139628	20	2.2	20	91	0	70	34	9	13	43	1.76
147822--147860	17	2.4	17	91	4	62	48	5	2	43	1.38

Tables:   1

The End!