genome.fa.s9300.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009300.1 Hibiscus syriacus cultivar Beakdansim tig00113021_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  152308

Tables:   1   

This is table  1  of  1  ( 89 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1957--1991	11	3.2	11	91	0	52	54	17	8	20	1.68
6155--6204	24	2.0	25	96	3	93	16	12	12	60	1.60
9485--9647	81	2.0	81	100	0	326	36	19	14	29	1.92
10142--10213	31	2.3	31	97	0	135	40	16	15	27	1.89
10297--10341	2	22.5	2	100	0	90	48	0	0	51	1.00
10433--10483	23	2.2	23	96	0	93	37	13	29	19	1.90
16905--16963	23	2.6	23	83	0	64	38	8	18	33	1.81
16877--17039	87	1.9	87	97	0	308	39	12	15	33	1.84
17056--17760	200	3.5	197	82	8	756	31	14	13	40	1.86
20294--20852	199	2.8	200	88	2	836	30	15	13	39	1.87
20294--20883	200	3.0	197	85	5	792	31	16	14	38	1.88
20796--20905	51	2.1	52	80	9	127	27	18	17	37	1.93
20597--21088	251	2.0	251	84	3	650	31	15	14	38	1.88
22356--22391	18	2.0	18	88	0	54	19	27	8	44	1.79
23195--23916	201	3.6	201	92	1	1189	32	16	13	37	1.88
24179--24227	19	2.6	19	93	0	80	57	6	0	36	1.24
24788--25488	4	178.5	4	95	3	1275	49	25	0	24	1.50
26688--26753	33	2.0	33	90	0	105	25	43	0	30	1.55
26787--26830	21	2.1	21	91	0	70	15	31	11	40	1.83
29050--29518	182	2.6	182	86	3	624	28	16	13	41	1.86
38542--38567	13	2.0	13	100	0	52	30	23	15	30	1.95
43316--43378	21	3.0	20	72	19	58	53	1	1	42	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43323--43359	19	2.1	19	85	10	51	56	0	2	40	1.13
47613--47669	20	2.8	20	89	0	87	22	33	29	14	1.93
48530--48605	3	26.0	3	79	10	86	64	0	1	34	1.02
48532--48589	20	2.9	20	90	10	84	65	0	1	32	1.03
48530--48595	23	2.9	23	90	4	98	63	0	1	34	1.04
48527--48607	23	3.6	23	80	11	87	64	0	1	34	1.02
48834--49143	138	2.2	138	95	0	557	29	16	13	40	1.87
48982--49044	17	3.4	17	68	19	54	17	25	7	49	1.74
49117--49507	123	3.3	121	79	9	469	28	18	15	38	1.91
51022--51082	20	3.0	21	83	11	81	8	13	0	78	0.95
54599--54645	11	4.5	10	85	15	60	72	0	12	14	1.13
54599--54645	21	2.2	21	88	7	69	72	0	12	14	1.13
58435--58466	15	2.1	15	100	0	64	50	6	18	25	1.70
62570--62627	21	2.7	21	75	17	57	51	1	1	44	1.21
62577--62613	19	2.1	19	85	10	51	56	0	2	40	1.13
62797--62837	3	13.7	3	94	0	73	63	0	0	36	0.95
63499--63549	22	2.3	22	93	0	84	15	54	17	11	1.70
64112--64159	17	2.8	17	84	6	62	62	0	2	35	1.07
64114--64141	14	2.0	14	100	0	56	64	0	0	35	0.94
64112--64141	3	10.3	3	92	7	53	63	0	0	36	0.95
64109--64175	17	3.7	18	70	18	57	61	0	1	37	1.05
64109--64177	26	2.9	23	73	12	66	62	0	1	36	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64538--64572	15	2.3	15	90	0	52	37	5	20	37	1.76
69510--69932	55	7.7	55	84	2	433	30	23	17	28	1.97
69943--70018	37	2.1	37	95	5	136	22	21	19	36	1.95
71303--71474	7	24.4	7	69	18	56	9	16	0	72	1.14
71316--71373	13	4.5	13	78	10	66	5	18	0	75	0.98
71338--71370	9	3.8	9	88	4	50	0	21	0	78	0.75
71292--71474	72	2.6	70	74	15	160	9	17	0	72	1.15
71387--71450	13	4.4	14	71	24	53	7	23	0	68	1.15
71387--71469	43	1.9	43	83	9	107	10	19	0	69	1.17
75138--75246	45	2.3	47	80	7	125	40	19	11	29	1.86
92029--92054	8	3.2	8	100	0	52	38	0	11	50	1.39
92965--93028	3	21.0	3	81	9	76	37	0	3	59	1.13
92965--93021	15	3.5	17	86	13	84	38	0	1	59	1.08
94562--94620	2	29.5	2	100	0	118	49	0	0	50	1.00
94763--94805	5	8.2	5	84	5	50	20	4	2	72	1.14
99736--99822	36	2.4	37	84	3	122	34	14	9	41	1.78
99959--100119	65	2.5	66	87	5	231	24	24	13	37	1.91
100118--100588	130	3.6	129	78	8	409	27	30	16	25	1.97
100500--100676	88	2.0	88	85	0	237	28	29	12	28	1.94
103609--103674	27	2.4	27	94	0	114	36	15	19	28	1.92
103726--103785	16	3.8	16	75	4	68	33	20	8	38	1.82
103728--103797	31	2.3	31	92	0	113	32	21	7	38	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103744--103797	15	3.5	15	77	5	63	31	24	7	37	1.83
103997--104053	30	1.9	30	92	0	96	52	1	5	40	1.34
105045--105130	38	2.3	38	83	4	102	45	8	2	44	1.46
105160--105190	9	3.3	9	91	8	53	80	0	0	19	0.71
105160--105190	10	3.2	10	95	4	55	80	0	0	19	0.71
111205--111230	12	2.2	12	100	0	52	15	7	7	69	1.35
112529--112596	2	34.0	2	100	0	136	50	0	0	50	1.00
112652--112975	85	3.8	85	90	0	488	32	17	20	29	1.96
113187--113488	154	1.9	154	79	8	326	46	7	6	39	1.58
113871--113927	26	2.2	26	84	3	71	75	5	3	15	1.12
114682--115701	113	8.7	119	84	9	822	25	19	15	38	1.91
115052--115722	113	5.9	113	95	0	1098	26	20	16	37	1.93
116091--116147	22	2.6	22	91	0	96	38	14	14	33	1.85
116511--116665	54	2.9	54	83	3	161	27	18	14	40	1.89
118314--118450	31	4.2	32	71	14	111	14	27	16	42	1.86
121949--121979	15	2.1	15	93	0	53	45	0	0	54	0.99
127669--127752	43	1.9	44	85	2	116	33	20	11	34	1.89
129018--129053	11	3.2	11	92	4	54	80	2	0	16	0.83
129606--129630	2	12.5	2	100	0	50	52	0	0	48	1.00
129602--129888	156	1.8	158	81	10	365	48	6	6	38	1.57
130005--130053	3	16.3	3	100	0	98	67	0	0	32	0.91
130905--130963	25	2.4	25	86	8	77	74	3	3	18	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
131072--131121	2	25.0	2	91	0	82	46	0	4	50	1.20

Tables:   1

The End!