genome.fa.s9301.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009301.1 Hibiscus syriacus cultivar Beakdansim tig00113023_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91293

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
421--471	19	2.8	18	75	16	50	72	0	1	25	0.95
1136--1210	28	2.6	28	89	2	114	14	12	46	26	1.79
1754--1939	95	2.0	94	93	3	320	28	20	23	27	1.99
1754--1939	47	3.9	47	94	2	320	28	20	23	27	1.99
2072--2938	246	3.5	246	92	2	1411	35	17	16	30	1.92
2771--2852	42	2.0	42	92	0	137	36	21	19	21	1.95
4941--4982	2	21.5	2	95	4	77	50	0	0	50	1.00
7133--7170	18	2.1	18	90	0	58	2	26	28	42	1.69
8761--8822	23	2.7	23	92	2	99	19	27	32	20	1.97
12625--12664	21	1.9	21	85	10	55	35	10	0	55	1.34
14957--15038	23	3.6	23	89	0	119	18	26	25	29	1.98
16791--17870	541	2.0	541	97	0	2052	41	5	23	29	1.76
18956--19004	21	2.3	21	100	0	98	28	24	20	26	1.99
19824--19882	23	2.6	23	83	0	73	20	25	23	30	1.98
21314--21627	159	2.0	159	94	1	549	28	18	13	39	1.89
23138--23981	450	1.9	450	93	0	1472	25	26	22	25	2.00
25855--25921	30	2.2	31	81	2	73	32	26	20	19	1.97
25880--26099	31	7.0	31	75	11	189	32	20	18	28	1.96
25881--26102	63	3.5	62	84	4	275	31	20	18	29	1.96
25881--26099	94	2.3	94	77	9	216	32	20	18	28	1.96
30698--30738	4	10.5	4	80	15	50	75	0	0	24	0.80
31879--31921	20	2.2	19	87	8	59	11	25	4	58	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34430--34464	14	2.5	14	95	0	61	22	14	14	48	1.79
38290--38351	3	20.7	3	100	0	124	66	0	0	33	0.92
38350--38473	63	2.0	64	88	1	187	45	13	8	32	1.73
48169--48220	21	2.5	21	87	0	68	25	26	23	25	2.00
48242--48274	6	5.5	6	100	0	66	33	51	15	0	1.43
48774--48798	6	4.2	6	100	0	50	0	16	48	36	1.46
48888--49031	21	6.9	21	77	10	127	31	22	22	23	1.99
49062--49147	41	2.1	41	89	4	129	25	22	18	33	1.96
49073--49215	62	2.3	62	96	0	259	25	21	20	32	1.98
49073--49229	21	7.6	21	74	18	132	24	21	22	31	1.98
49453--49491	19	2.0	20	85	5	53	48	0	10	41	1.37
51751--51812	18	3.2	20	78	19	62	61	0	1	37	1.06
51807--51961	63	2.5	63	88	9	230	56	1	0	41	1.12
51828--51910	40	2.2	36	85	12	105	55	0	0	44	0.99
51861--51942	24	3.2	26	80	13	91	56	0	1	42	1.07
52369--52426	24	2.4	24	100	0	116	36	13	17	32	1.89
53755--53804	19	2.6	19	93	0	82	56	18	12	14	1.68
56435--56462	10	2.8	10	100	0	56	75	0	10	14	1.06
57630--57667	14	2.7	15	92	8	62	63	7	7	21	1.47
63826--64082	126	2.0	125	91	2	417	34	21	11	33	1.89
66673--66700	2	14.0	2	100	0	56	50	0	0	50	1.00
71287--71357	30	2.3	31	90	2	108	40	4	22	32	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71524--71571	20	2.4	20	96	0	87	22	8	18	50	1.74
71618--71695	23	3.3	23	66	16	70	19	24	25	30	1.98
73757--73823	20	3.3	20	97	0	116	23	32	8	34	1.86
74545--74617	29	2.4	29	76	13	69	47	5	15	31	1.67
77199--77251	26	2.0	26	96	0	97	22	9	26	41	1.84
77236--77340	54	1.9	54	94	0	183	24	15	20	40	1.91
77743--77787	17	2.6	17	85	0	63	68	2	11	17	1.29
81070--81266	97	2.0	97	100	0	394	37	12	8	42	1.72
81251--81306	2	28.0	2	100	0	112	50	0	0	50	1.00
82520--82656	64	2.2	63	80	6	143	26	24	16	32	1.96
85619--86074	234	2.0	224	88	7	668	28	12	17	40	1.87
87478--87507	15	2.0	15	100	0	60	33	6	26	33	1.83

Tables:   1

The End!