genome.fa.s9302.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009302.1 Hibiscus syriacus cultivar Beakdansim tig00113024_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  125207

Tables:   1   

This is table  1  of  1  ( 104 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3118--3143	2	13.0	2	100	0	52	50	0	0	50	1.00
7682--7752	30	2.3	31	90	2	108	40	4	22	32	1.73
7918--7965	20	2.4	20	96	0	87	22	8	18	50	1.74
8010--8087	23	3.3	23	66	16	70	19	24	25	30	1.98
10123--10189	20	3.3	20	97	0	116	23	32	8	34	1.86
10909--10981	29	2.4	29	76	13	69	47	5	15	31	1.67
13549--13601	26	2.0	26	96	0	97	22	9	26	41	1.84
13586--13690	54	1.9	54	94	0	183	24	15	20	40	1.91
14092--14134	15	2.6	17	78	14	54	69	2	9	18	1.26
17400--17592	95	2.0	95	100	0	386	36	12	8	42	1.73
17579--17638	2	30.0	2	100	0	120	50	0	0	50	1.00
21959--22427	239	2.0	232	87	6	685	28	12	18	40	1.87
24644--24676	15	2.1	16	88	5	50	51	15	24	9	1.72
30499--31004	252	2.0	252	87	2	739	40	18	18	22	1.91
32959--32990	14	2.1	16	88	11	50	15	15	18	50	1.79
33254--33348	10	8.5	10	68	21	55	9	10	20	60	1.57
33254--33344	23	3.9	23	81	2	119	9	9	19	60	1.56
33301--33332	14	2.3	14	94	0	55	3	6	25	65	1.31
42001--42055	21	2.6	21	77	8	58	34	21	20	23	1.97
42081--42234	20	7.7	20	89	2	247	31	27	19	20	1.97
42043--42234	60	3.2	60	83	4	253	34	27	18	18	1.95
42615--42685	33	2.2	33	92	0	115	11	22	16	49	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42759--42822	21	3.0	20	79	6	74	48	15	18	17	1.81
42847--42911	21	3.1	21	80	4	87	12	26	13	47	1.78
42846--42909	20	3.2	20	80	4	83	14	25	14	46	1.81
44594--44969	93	4.1	93	98	0	718	22	12	19	46	1.83
45049--45140	19	5.4	17	71	24	70	48	27	16	7	1.72
45017--45140	33	3.7	33	88	3	169	47	26	16	8	1.76
45098--45124	14	1.9	14	100	0	54	48	29	14	7	1.71
45136--45308	19	9.6	19	76	12	159	10	20	23	45	1.81
45158--45214	14	3.7	14	75	20	51	10	22	22	43	1.84
45136--45308	33	4.8	38	80	8	168	10	20	23	45	1.81
47231--47266	14	2.6	14	95	0	63	33	0	22	44	1.53
47373--47470	19	5.4	19	84	13	143	45	17	22	14	1.84
47373--47489	53	2.2	53	98	1	227	44	17	23	13	1.85
47479--47719	19	13.7	19	77	18	254	15	21	17	45	1.85
47479--47719	52	4.6	52	88	4	256	15	21	17	45	1.85
47479--47733	71	3.6	71	84	9	346	14	22	17	45	1.85
47485--47733	33	7.2	33	76	16	245	14	22	17	45	1.84
50943--51151	20	10.4	20	86	2	222	19	17	25	37	1.93
51145--51191	21	2.2	22	81	7	53	27	19	21	31	1.97
55095--55129	2	17.5	2	100	0	70	48	0	0	51	1.00
55917--56024	54	2.0	54	98	0	207	42	21	16	19	1.89
61302--61337	17	2.2	17	90	5	56	36	0	22	41	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66241--66281	2	20.5	2	100	0	82	48	0	0	51	1.00
66705--66808	21	5.0	21	73	15	90	21	20	23	35	1.96
66711--66808	42	2.3	42	92	0	169	21	19	23	35	1.96
66913--66946	12	3.1	11	91	8	52	29	52	17	0	1.45
67428--67473	5	8.8	5	95	4	74	0	19	43	36	1.51
67543--67685	21	6.9	20	74	12	96	30	23	21	24	1.99
67609--67835	83	2.7	82	80	7	219	27	22	21	29	1.99
67701--67839	21	6.7	21	82	8	158	24	20	23	31	1.98
67589--67839	42	6.0	42	71	12	169	27	21	22	28	1.99
67543--67760	104	2.1	104	95	0	391	30	22	21	25	1.98
70126--70159	11	3.1	11	91	8	52	64	0	0	35	0.94
71406--71471	3	21.3	3	76	11	62	65	1	1	31	1.11
71399--71469	13	5.6	13	80	6	83	66	1	2	29	1.15
71399--71471	37	2.0	36	86	5	103	65	1	2	30	1.15
71490--71787	36	8.1	36	75	13	223	43	6	3	46	1.45
71491--71781	75	3.9	74	78	9	265	44	6	3	46	1.45
71622--71646	11	2.3	11	100	0	50	44	8	8	40	1.63
71729--71810	36	2.2	36	80	6	85	45	7	4	42	1.53
72512--73181	84	8.2	81	75	8	581	24	20	24	29	1.99
72512--73181	165	4.1	165	85	5	774	24	20	24	29	1.99
78081--78141	4	15.0	4	77	13	54	70	1	1	26	1.06
78109--78141	11	3.0	11	90	0	57	69	0	0	30	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78107--78150	22	2.0	22	90	0	70	70	0	2	27	0.99
79384--79465	3	26.3	3	78	9	76	63	1	2	32	1.15
79364--79441	22	3.6	22	78	15	74	67	2	2	26	1.16
79384--79454	28	2.7	26	81	10	81	64	1	2	30	1.16
79397--79435	16	2.5	16	87	4	53	66	2	2	28	1.18
79592--79652	11	5.3	11	74	18	52	44	9	4	40	1.59
79592--79652	12	5.2	12	74	16	56	44	9	4	40	1.59
79575--79701	36	3.5	35	81	14	134	44	8	3	42	1.53
79684--79753	2	36.5	2	91	8	119	50	0	0	50	1.00
86381--86473	20	4.6	20	77	4	78	32	23	17	26	1.96
86464--86512	20	2.5	20	93	0	80	44	22	12	20	1.84
86341--86491	81	1.9	81	79	10	175	33	24	15	26	1.95
86660--86717	22	2.6	22	86	0	80	20	43	17	18	1.89
87051--87101	20	2.5	20	93	0	84	52	23	15	7	1.68
88847--88967	63	1.9	63	83	3	154	22	13	33	31	1.92
89092--89210	42	2.8	41	85	7	150	22	34	17	25	1.96
89092--89188	21	4.6	21	84	3	133	23	32	17	25	1.96
89092--89213	63	2.0	62	82	8	149	22	36	17	24	1.95
90570--90608	14	2.6	15	84	8	53	30	0	20	48	1.50
90754--90832	33	2.6	30	90	8	115	32	24	16	26	1.96
93331--93384	24	2.2	24	93	0	90	40	20	18	20	1.91
94127--94164	16	2.5	15	88	12	60	68	0	2	28	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94297--94368	18	3.9	18	80	7	90	38	13	18	29	1.89
94296--94421	20	6.5	20	74	12	102	36	15	20	27	1.93
94296--94381	38	2.3	38	93	0	154	36	13	19	30	1.91
94354--94441	40	2.2	40	83	4	106	37	14	20	27	1.92
95206--95317	37	3.0	37	77	5	118	46	7	5	41	1.54
96719--96848	51	2.5	51	86	2	172	17	30	29	22	1.97
102060--102091	16	1.9	17	93	6	57	31	31	21	15	1.95
104654--104795	73	1.9	73	90	2	223	42	6	6	45	1.55
109808--109843	6	6.0	6	100	0	72	16	16	0	66	1.25
111772--111831	21	2.9	21	75	9	77	45	3	18	33	1.66
112787--113212	216	2.0	215	92	2	705	29	9	13	47	1.75
120542--120574	6	5.5	6	100	0	66	30	15	36	18	1.91
123124--123154	16	1.9	16	93	0	53	19	12	0	67	1.22
124065--124165	45	2.2	45	85	1	139	26	4	11	56	1.55
124387--124481	44	2.2	44	94	0	163	37	20	27	14	1.91
125038--125077	20	2.0	20	85	0	53	22	22	10	45	1.82

Tables:   1

The End!